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(-) Description

Title :  CRYSTAL STRUCTURE OF CARBAMOYLPHOSPHATE SYNTHASE LARGE SUBUNIT (SPLIT GENE IN MJ) (ZP_00538348.1) FROM EXIGUOBACTERIUM SP. 255-15 AT 2.00 A RESOLUTION
 
Authors :  Joint Center For Structural Genomics (Jcsg)
Date :  23 Apr 07  (Deposition) - 08 May 07  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (2x)
Keywords :  Zp_00538348. 1, Atp-Grasp Domain, Carbamoylphosphate Synthase Large Subunit (Split Gene In Mj), Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi-2, Ligase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of Carbamoylphosphate Synthase Large Subunit (Split Gene In Mj) (Zp_00538348. 1) From Exiguobacterium Sp. 255-15 At 2. 00 A Resolution
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - CARBAMOYLPHOSPHATE SYNTHASE LARGE SUBUNIT
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: SPEEDET
    Expression System Strain: HK100
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: ATP-GRASP DOMAIN
    Gene: ZP_00538348.1, EXIGDRAFT_2250
    Organism Scientific: EXIGUOBACTERIUM SIBIRICUM
    Organism Taxid: 262543
    Strain: 255-15
    Synonym: SPLIT GENE IN MJ

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (2x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 8)

Asymmetric Unit (2, 8)
No.NameCountTypeFull Name
1GOL1Ligand/IonGLYCEROL
2MSE7Mod. Amino AcidSELENOMETHIONINE
Biological Unit 1 (2, 16)
No.NameCountTypeFull Name
1GOL2Ligand/IonGLYCEROL
2MSE14Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLU A:222 , ASP A:252 , ASN A:268 , ARG A:270 , GLY A:273 , GLY A:274 , HOH A:461BINDING SITE FOR RESIDUE GOL A 331

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2PN1)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2PN1)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2PN1)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2PN1)

(-) Exons   (0, 0)

(no "Exon" information available for 2PN1)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:PROTEIN  Length:308
 aligned with B1YM69_EXIS2 | B1YM69 from UniProtKB/TrEMBL  Length:330

    Alignment length:331
                             1                                                                                                                                                                                                                                                                                                                                         
                             |       9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329 
         B1YM69_EXIS2     - -MQKPHLLITSAGRRAKLVEYFVKEFKTGRVSTADCSPLASALYMADQHYIVPKIDEVEYIDHLLTLCQDEGVTALLTLIDPELGLLAQATERFQAIGVTVIVSPYAACELCFDKYTMYEYCLRQGIAHARTYATMASFEEALAAGEVQLPVFVKPRNGSASIEVRRVETVEEVEQLFSKNTDLIVQELLVGQELGVDAYVDLISGKVTSIFIKEKLTMRAGETDKSRSVLRDDVFELVEHVLDGSGLVGPLDFDLFDVAGTLYLSEINPRFGGGYPHAYECGVNFPAQLYRNLMHEINVPQIGQYLDDIYMLKHDTVTLISAAELQKIKR 330
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 2pn1A01 A:0-103,A:312-330  [code=3.40.50.20, no name defined]                                           2pn1A02 A:104-190 ATP-grasp fold, A domain                                             2pn1A03 A:191-310 ATP-grasp fold, B domain                                                                              -2pn1A01             CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------ATP-grasp_4-2pn1A01 A:110-276                                                                                                                                          ------------------------------------------------------ Pfam domains
         Sec.struct. author .....eeeee....hhhhhhhhhhhh...eeeeee....hhhhhhh..eee.......hhhhhhhhhhhhhh..eeee.hhhhhhhhhhhhhhhhh...ee...hhhhhhhhhhhhhhhhhhhhhh.....ee.hhhhhhhhhhh......eeeee...-----------------------.eeeee....eeeeeeeee......eeeeeeeeeeeee..eeeeeeee.hhhhhhhhhhhhh.....eeeeeeeeee..eeeeeeee.....hhhhhhhh..hhhhhhhhhhh...............eee........hhhhhh.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2pn1 A   0 GmQKPHLLITSAGRRAKLVEYFVKEFKTGRVSTADCSPLASALYmADQHYIVPKIDEVEYIDHLLTLCQDEGVTALLTLIDPELGLLAQATERFQAIGVTVIVSPYAACELCFDKYTmYEYCLRQGIAHARTYATmASFEEALAAGEVQLPVFVKPRNG-----------------------DLIVQELLVGQELGVDAYVDLISGKVTSIFIKEKLTmRAGETDKSRSVLRDDVFELVEHVLDGSGLVGPLDFDLFDVAGTLYLSEINPRFGGGYPHAYECGVNFPAQLYRNLmHEINVPQIGQYLDDIYmLKHDTVTLISAAELQKIKR 330
                             |       9        19        29        39    |   49        59        69        79        89        99       109       119       129     | 139       149        |-         -         -  |    189       199       209       219       229       239       249       259       269       279       289    |  299       309 |     319       329 
                             |                                         44-MSE                                                                  117-MSE           135-MSE                158                     182                                 218-MSE                                                                     294-MSE          311-MSE               
                             1-MSE
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2PN1)

(-) CATH Domains  (3, 3)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (1, 1)

Asymmetric Unit
(-)
Clan: ATP-grasp (83)

(-) Gene Ontology  (3, 3)

Asymmetric Unit(hide GO term definitions)
Chain A   (B1YM69_EXIS2 | B1YM69)
molecular function
    GO:0005524    ATP binding    Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
    GO:0003824    catalytic activity    Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.

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