Chain A from PDB Type:PROTEIN Length:776
aligned with RPOA1_SULSO | Q980R2 from UniProtKB/Swiss-Prot Length:880
Alignment length:876
13 23 33 43 53 63 73 83 93 103 113 123 133 143 153 163 173 183 193 203 213 223 233 243 253 263 273 283 293 303 313 323 333 343 353 363 373 383 393 403 413 423 433 443 453 463 473 483 493 503 513 523 533 543 553 563 573 583 593 603 613 623 633 643 653 663 673 683 693 703 713 723 733 743 753 763 773 783 793 803 813 823 833 843 853 863 873
RPOA1_SULSO 4 KNIKGIKFGILSPDEIRKMSVTAIITPDVYDEDGTPIEGSVMDPRLGVIEPGQKCPTCGNTLGNCPGHFGHIELVRPVIHVGLVKHIYEFLKATCRRCGRVKISEDEIEKYSRIYNAIKKRWPSAARRLTEYVKKTAMKAQVCPHCNEKQYKIKLEKPYNFYEERKEGVAKLTPSDIRERLEKIPDSDVEILGYDPTTSRPEWMILTVLPVPPITIRPSIMIESGIRAEDDLTHKLVDIVRINERLKESIDAGAPQLIIEDLWDLLQYHVATYFDNEIPGLPPSKHRSGRPLRTLAQRLKGKEGRFRGNLSGKRVDFSSRTVISPDPNISIDEVGVPEIIAKTLTVPERITPWNIEKLRQFVINGPDKWPGANYVIRPDGRRIDLRYVKDRKELASTLAPGYIIERHLIDGDIVLFNRQPSLHRISMMAHRVRVLKGLTFRLNLLVCPPYNADFDGDEMNLHVPQSEEAIAEAKEIMLVHKNIITPRYGGPIIGAAQDYISGAYLLTVKTTLLTKEEAQQILGVADVKIDLGEPAILAPREYYTGKQVISAFLPKDFNFHGQANVSSGPRLCKNEDCPHDSYVVIKNGILLEGVFDKKAIGNQQPESILHWLIKEYSDEYGKWLMDNLFRVFIRFVELQGFTMRLEDVSLGDDVKKEIYNEIDRAKVEVDNLIQKYKNGELEPIPGRTLEESLENYILDTLDKLRSTAGDIASKYLDPFNFAYVMARTGARGSVLNITQMAAMLGQQSVRGERIKRGYMTRTLPHFKPYDISPEARGFIYSSFRTGLKPTELFFHAAGGREGLVDTAVRTSQSGYMQRRLINALSDLRAEYDGTVRSLYGEVVQVAYGDDGVFPMYSAHGKTVDVNRIFERVVGWK 879
SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
Sec.struct. author .....ee....hhhhhhhh........--------------.........................................hhhhhhhhh..-----------------------------------------------------------------------------..hhhhhhhhhh..hhhhhhhhhh.........................---------.hhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhh..................hhhhh......hhhhhh.eee....eeeeeee.......eeee..hhhhhheee......hhhhhhhhhhhh.........ee................hhhhhh....eeeee.....eeeee.....hhh.eeeeeeee.....eeehhhhhhhhh......eeeee...hhhhhhhhhhhh.hhhh.ee....ee.....hhhhhhhhhhh......hhhhhhhh......................hhhhhhh........eee.....................eee..........hhhhhh.....hhhhhhhhh...hhhhhhhhhhhhhhhhhhh...............hhhhhhhhhhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhh......hhhhhhhhhh...............................................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh............ee.....eee.hhhhh..hhhhh.....hhhhhhhhhh.... Sec.struct. author
SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
2pmz A 4 KNIKGIKFGILSPDEIRKMSVTAIITP--------------MDPRLGVIEPGQKCPTCGNTLGNCPGHFGHIELVRPVIHVGLVKHIYEFLKA-----------------------------------------------------------------------------KLTPSDIRERLEKIPDSDVEILGYDPTTSRPEWMILTVLPVPPITIRPS---------EDDLTHKLVDIVRINERLKESIDAGAPQLIIEDLWDLLQYHVATYFDNEIPGLPPSKHRSGRPLRTLAQRLKGKEGRFRGNLSGKRVDFSSRTVISPDPNISIDEVGVPEIIAKTLTVPERITPWNIEKLRQFVINGPDKWPGANYVIRPDGRRIDLRYVKDRKELASTLAPGYIIERHLIDGDIVLFNRQPSLHRISMMAHRVRVLKGLTFRLNLLVCPPYNADFDGDEMNLHVPQSEEAIAEAKEIMLVHKNIITPRYGGPIIGAAQDYISGAYLLTVKTTLLTKEEAQQILGVADVKIDLGEPAILAPREYYTGKQVISAFLPKDFNFHGQANVSSGPRLCKNEDCPHDSYVVIKNGILLEGVFDKKAIGNQQPESILHWLIKEYSDEYGKWLMDNLFRVFIRFVELQGFTMRLEDVSLGDDVKKEIYNEIDRAKVEVDNLIQKYKNGELEPIPGRTLEESLENYILDTLDKLRSTAGDIASKYLDPFNFAYVMARTGARGSVLNITQMAAMLGQQSVRGERIKRGYMTRTLPHFKPYDISPEARGFIYSSFRTGLKPTELFFHAAGGREGLVDTAVRTSQSGYMQRRLINALSDLRAEYDGTVRSLYGEVVQVAYGDDGVFPMYSAHGKTVDVNRIFERVVGWK 879
13 23 | - - | 53 63 73 83 93 | - - - - - - - -| 183 193 203 213 |- 233 243 253 263 273 283 293 303 313 323 333 343 353 363 373 383 393 403 413 423 433 443 453 463 473 483 493 503 513 523 533 543 553 563 573 583 593 603 613 623 633 643 653 663 673 683 693 703 713 723 733 743 753 763 773 783 793 803 813 823 833 843 853 863 873
30 45 96 174 222 232
Chain B from PDB Type:PROTEIN Length:1090
aligned with Q980R1_SULSO | Q980R1 from UniProtKB/TrEMBL Length:649
Alignment length:1115
1
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - | 9 19 29 39 49 59 69 79 89 99 109 119 129 139 149 159 169 179 189 199 209 219 229 239 249 259 269 279 289 299 309 319 329 339 349 359 369 379 389 399 409 419 429 439 449 459 469 479 489 499 509 519 529 539 549 559 569 579 589 599 609 619 629 639
Q980R1_SULSO - ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MLYGINERIVEKTLYEMGVVPVEEVIRRVTEGGEDQNEYLKWSKVILNGRLIGYYQDGGELANKIRERRRKGEISDEVNVGHIVTDFINEVHVNCDSGRVRRPLIIVSNGNPLVTIEDIEKLESGAITFDDLVRQGKIEYLDAEEEENAYVALEPNDLTPDHTHLEIWSPAILGITASIIPYPEHNQSPRNTYQSAMAKQALGLYAANYQLRTDTRAHLLHYPQRPLVQTRALDIIGYTNRPAGNNAILAVMSFTGYNMEDSIIMNRSSVERGMYRSTFFRLYSTEEVKYPGGQEDKIVMPEAGVRGYKGKEYYRLLEDNGVVSPEVEVKGGDVLIGKVSPPRFLQEFKELSPEQAKRDTSIVTRHGEMGIVDLVLITETAEGNKLVKVRVRDLRIPTIGDKFASRHGQKGVIGMLIPQVDMPYTVKGVVPDIILNPHALPSRMTLGQIMEGIAGKYAALSGNIVDATPFYKTPIEQLQNEILRYGYLPDATEVVYDGRTGQKIKSRIYFGVVYYQKLHHMVADKLHARARGPVQILTRQPTEGRAREGGLRFGEMERDCLIGFGTAMLLKDRLLDNSDRTMIYVCDQCGYIGWYDKNKNKYVCPIHGDKSNLFPVTVSYAFKLLIQELMSMIISPRLVLEDKV 644
SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author ..hhhhhhhhhhhhh.......hhhhhhhhhhh...................eeee....................hhhhhh.............eeee........................hhhhhhhhhhhhhhh..........hhhhh.eee..ee....eeeeee..........eeeeee.........eeeeee....eee......eeehhhhhhhh...hhhhhhhhhh.....hhhhhhhhhhh.........hhhhhh......hhhhhhhhhhhhhhh............hhhhhhhhhhhhhhhh...................eehhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhh......hhhhhh..............eee...hhhhhhhhhhhh...............................................eee......hhhhhhh...ee.....-------------.....eee.....ee.....hhhhhhhhhh.........eeee........eeee..eeee.eeee.........hhhhhhh......hhhhhhhh..eeee...hhhhh....hhhhhh...............hhhhh.......hhhhhhhhhhhhhhh...............ee..................hhhhh..eeee...................hhhhhh......eeeeeee...........................hhhhh..........ee....eee.......------------......ee......eeeeeeeeee.....eeeeeeee..........ee..................ee...........hhhhhhhhh..hhhhhhhhhhh................hhhhhhhhhhhh..........ee...............eeeee...hhhhh..................hhhhh...eee...hhhhhh..................eeeee..........hhhhh...........eeeee.hhhhhhhhhhhhhh....ee...... Sec.struct. author
SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
2pmz B 5 LTIDERWRVIEAYFKSKGLVRQHLDSYNDFVRNKLQEIIDEQGEIPTEIPGLKVRLGKIRIGKPRVRESDRGEREISPMEARLRNLTYAAPLWLTMIPVENNIEAEPEEVYIGDLPIMLKSAIDPISQYTLDKLIEIGEDPKDPGGYFIVNGSERVIVTQEDLAPNRVLVDTGKTGSNITHTAKIISSTAGYRVPVTIERLKDGTFHVSFPAVPGKIPFVILMRALGILTDRDIVYAVSLDPEVQNELFPSLEQASSIANVDDALDFIGSRVAIGQKRENRIEKAQQIIDKYFLPHLGTSAEDRKKKAYYLAYAISKVIELYLGRREPDDKDHYANKRLRLAGDLFASLFRVAFKAFVKDLTYQLEKSKVRGRKLALKALVRPDIVTERIRHALATGNWVGGRTGVSQLLDRTNWLSMLSHLRRVISSLARGQPNFEARDLHGTQWGRMCPFETPEGPNSGLVKNLALMAQIAVGINERIVEKTLYEMGVVPVEEVI-------------LKWSKVILNGRLIGYYQDGGELANKIRERRRKGEISDEVNVGHIVTDFINEVHVNCDSGRVRRPLIIVSNGNPLVTIEDIEKLESGAITFDDLVRQGKIEYLDAEEEENAYVALEPNDLTPDHTHLEIWSPAILGITASIIPYPEHNQSPRNTYQSAMAKQALGLYAANYQLRTDTRAHLLHYPQRPLVQTRALDIIGYTNRPAGNNAILAVMSFTGYNMEDSIIMNRSSVERGMYRSTFFRLYSTEEVKYPGGQEDKIVMPEAGVRGYKGKEYYRLLEDNGVVSPEVEVKGGDVLIGKVSPPR------------AKRDTSIVTRHGEMGIVDLVLITETAEGNKLVKVRVRDLRIPTIGDKFASRHGQKGVIGMLIPQVDMPYTVKGVVPDIILNPHALPSRMTLGQIMEGIAGKYAALSGNIVDATPFYKTPIEQLQNEILRYGYLPDATEVVYDGRTGQKIKSRIYFGVVYYQKLHHMVADKLHARARGPVQILTRQPTEGRAREGGLRFGEMERDCLIGFGTAMLLKDRLLDNSDRTMIYVCDQCGYIGWYDKNKNKYVCPIHGDKSNLFPVTVSYAFKLLIQELMSMIISPRLVLEDKV 1119
14 24 34 44 54 64 74 84 94 104 114 124 134 144 154 164 174 184 194 204 214 224 234 244 254 264 274 284 294 304 314 324 334 344 354 364 374 384 394 404 414 424 434 444 454 464 474 484 494 | - -| 524 534 544 554 564 574 584 594 604 614 624 634 644 654 664 674 684 694 704 714 724 734 744 754 764 774 784 794 804 814 | - |834 844 854 864 874 884 894 904 914 924 934 944 954 964 974 984 994 1004 1014 1024 1034 1044 1054 1064 1074 1084 1094 1104 1114
501 515 818 831
Chain C from PDB Type:PROTEIN Length:279
aligned with RPOA2_SULSO | P58192 from UniProtKB/Swiss-Prot Length:392
Alignment length:385
17 27 37 47 57 67 77 87 97 107 117 127 137 147 157 167 177 187 197 207 217 227 237 247 257 267 277 287 297 307 317 327 337 347 357 367 377 387
RPOA2_SULSO 8 PYLEEKVKQASNILPQKIVDDLKNLILNKEIIVTRDEIDKIFDLAIKEYSEGLIAPGEAIGIVAAQSVGEPGTQMTLRTFHFAGIRELNVTLGLPRLIEIVDAKKVPSTPMMTIYLTDEYKRDRDKALEVARKLEYTKIENVVSSTSIDIASMSIILQLDNEMLKDKGVTVDDVKKAIGRLKLGDFMIEESEDSTLNINFANIDSIAALFKLRDKILNTKIKGIKGIKRAIVQKKGDEYIILTDGSNLSGVLSVKGVDVAKVETNNIREIEEVFGIEAAREIIIREISKVLAEQGLDVDIRHILLIADVMTRTGIVRQIGRHGVTGEKNSVLARAAFEVTVKHLLDAAARGDVEEFKGVVENIIIGHPIKLGTGMVELTMRPILR 392
SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author ..hhhhhhhhhhhhhhh...hhhhhhhh..........hhhhhhhhhhhhhhh.....hhhhhhhhhh..hhhhh.---------------..hhhhhhhhhh.......eeeee.......hhhhhhhhhhh...-------------------------------------------------------------------------------------------............eeeee.............eeeeee....hhhhhhhhhhhhhhhhhhh...hhhhh....hhhhhhhhhhhhh..................hhhhhhhh....hhhhhhhhh.........hhhhhhh..........eee...... Sec.struct. author
SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
2pmz C 11 PYLEEKVKQASNILPQKIVDDLKNLILNKEIIVTRDEIDKIFDLAIKEYSEGLIAPGEAIGIVAAQSVGEPGTQMT---------------LGLPRLIEIVDAKKVPSTPMMTIYLTDEYKRDRDKALEVARKLEY-------------------------------------------------------------------------------------------KRAIVQKKGDEYIILTDGSNLSGVLSVKGVDVAKVETNNIREIEEVFGIEAAREIIIREISKVLAEQGLDVDIRHILLIADVMTRTGIVRQIGRHGVTGEKNSVLARAAFEVTVKHLLDAAARGDVEEFKGVVENIIIGHPIKLGTGMVELTMRPILR 395
20 30 40 50 60 70 80 | - - | 110 120 130 140 | - - - - - - - - - 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390
86 102 146 238
Chain D from PDB Type:PROTEIN Length:264
aligned with RPOD_SULSO | P95989 from UniProtKB/Swiss-Prot Length:265
Alignment length:264
11 21 31 41 51 61 71 81 91 101 111 121 131 141 151 161 171 181 191 201 211 221 231 241 251 261
RPOD_SULSO 2 SINLLHKDDTRIDLVFEGYPLEFVNAIRRASMLYVPIMAVDDVYFIENNSPLYDEILAHRLALIPFMSEEALDTYRWPEECIECTENCEKCYTKIYIEAEAPNEPRMIYSKDIKSEDPSVVPISGDIPIVLLGTNQKISLEARLRLGYGKEHAKFIPVSLSVVRYYPKVEILANCEKAVNVCPEGVFELKDGKLSVKNELSCTLCEECLRYCNGSIRISFVEDKYILEIESVGSLKPERILLEAGKSIIRKIEELEKKLVEVVK 265
SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
Sec.struct. author ...eeee...eeee.....hhhhhhhhhhhhhh...eeeeeeeeeeee....hhhhhhhhhhh...hhhhhh.......................ee........eeee.hhh..............eeeee.....eeeeeeeeee..............eeeeeeee.......hhhhhh.........................hhhhhh....eeeeeeeeeeeee.....hhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
PROSITE (2) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE (2)
PROSITE (3) ------------------------RNA_POL_D_30KD PDB: D:26-66 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (3)
Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
2pmz D 2 SINLLHKDDTRIDLVFEGYPLEFVNAIRRASMLYVPIMAVDDVYFIENNSPLYDEILAHRLALIPFMSEEALDTYRWPEECIECTENCEKCYTKIYIEAEAPNEPRMIYSKDIKSEDPSVVPISGDIPIVLLGTNQKISLEARLRLGYGKEHAKFIPVSLSVVRYYPKVEILANCEKAVNVCPEGVFELKDGKLSVKNELSCTLCEECLRYCNGSIRISFVEDKYILEIESVGSLKPERILLEAGKSIIRKIEELEKKLVEVVK 265
11 21 31 41 51 61 71 81 91 101 111 121 131 141 151 161 171 181 191 201 211 221 231 241 251 261
Chain E from PDB Type:PROTEIN Length:176
aligned with Q980A3_SULSO | Q980A3 from UniProtKB/TrEMBL Length:180
Alignment length:180
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180
Q980A3_SULSO 1 MYKLIKARSIVRIPPNEFGKPLNEIALNELRQQYQEKILKDLGLVLAILNVKTSEEGILVFGDGATYHEVEFDMITYVPVVQEVVEGEVLQVDNYGIFVNLGPMDGLVHISQITDDTLKYDNVRGIIFGEKSKKVIQKGDKVRARVISVASTVTGRLPRIALTMRQPYLGKLEWITQTKK 180
SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
CATH domains 2pmzE01 E:1-81 DNA-directed RNA polymerase ii subunit; domain 1 2pmzE02 E:82-180 Nucleic acid-binding proteins CATH domains
Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
Sec.struct. author .eeeeeeeeeeeehhhhh..hhhhhhhhhhhh...........eeeee.................eeeeeeeeeeee......ee...eeee...eeeee....eeeee..................................ee........----..ee.........hhhhhh.... Sec.struct. author
SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
2pmz E 1 MYKLIKARSIVRIPPNEFGKPLNEIALNELRQQYQEKILKDLGLVLAILNVKTSEEGILVFGDGATYHEVEFDMITYVPVVQEVVEGEVLQVDNYGIFVNLGPMDGLVHISQITDDTLKYDNVRGIIFGEKSKKVIQKGDKVRARVISVASTV----PRIALTMRQPYLGKLEWITQTKK 180
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 | 160 170 180
153 158
Chain F from PDB Type:PROTEIN Length:89
aligned with Q9UXD9_SULSF | Q9UXD9 from UniProtKB/TrEMBL Length:113
Alignment length:89
10 20 30 40 50 60 70 80
Q9UXD9_SULSF 1 MSSVYIVEEHYIPYSVAKKLLTDVIRSGGSSNLLQRTYDYLNSVEKCDAESAQKVIEELSNIVSREDVRAILASICPTTSDEVRSILVM 89
SCOP domains ----------------------------------------------------------------------------------------- SCOP domains
CATH domains ----------------------------------------------------------------------------------------- CATH domains
Pfam domains ----------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author ....eeeeeeee..hhhhhhhhh.......hhhhhhhhhhh......hhhhhhhhh........hhhhhhhhhhhh............. Sec.struct. author
SAPs(SNPs) ----------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE ----------------------------------------------------------------------------------------- PROSITE
Transcript ----------------------------------------------------------------------------------------- Transcript
2pmz F 1 MSSVYIVEEHYIPYSVAKKLLTDVIRSGGSSNLLQRTYDYLNSVEKCDAESAQKVIEELSNIVSREDVRAILASICPTTSDEVRSILVM 89
10 20 30 40 50 60 70 80
Chain G from PDB Type:PROTEIN Length:279
aligned with RPOA2_SULSO | P58192 from UniProtKB/Swiss-Prot Length:392
Alignment length:385
17 27 37 47 57 67 77 87 97 107 117 127 137 147 157 167 177 187 197 207 217 227 237 247 257 267 277 287 297 307 317 327 337 347 357 367 377 387
RPOA2_SULSO 8 PYLEEKVKQASNILPQKIVDDLKNLILNKEIIVTRDEIDKIFDLAIKEYSEGLIAPGEAIGIVAAQSVGEPGTQMTLRTFHFAGIRELNVTLGLPRLIEIVDAKKVPSTPMMTIYLTDEYKRDRDKALEVARKLEYTKIENVVSSTSIDIASMSIILQLDNEMLKDKGVTVDDVKKAIGRLKLGDFMIEESEDSTLNINFANIDSIAALFKLRDKILNTKIKGIKGIKRAIVQKKGDEYIILTDGSNLSGVLSVKGVDVAKVETNNIREIEEVFGIEAAREIIIREISKVLAEQGLDVDIRHILLIADVMTRTGIVRQIGRHGVTGEKNSVLARAAFEVTVKHLLDAAARGDVEEFKGVVENIIIGHPIKLGTGMVELTMRPILR 392
SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
Pfam domains (1) -----------RNA_pol_Rpb1_5-2pmzG01 G:22-344 --------------------------------------------------- Pfam domains (1)
Pfam domains (2) -----------RNA_pol_Rpb1_5-2pmzG02 G:22-344 --------------------------------------------------- Pfam domains (2)
Sec.struct. author ..hhhhhhhhhhhhhhh...hhhhhhhh..........hhhhhhhhhhhhhhh.....hhhhhhhhhh..hhhhh.---------------..hhhhhhhhhh.......eeeee.......hhhhhhhhhhh...-------------------------------------------------------------------------------------------............eeeee.............eeeeee....hhhhhhhhhhhhhhhhhhh...hhhhh....hhhhhhhhhhhhh..................hhhhhhhh....hhhhhhhhh.........hhhhhhh....hhhhh.eee...... Sec.struct. author
SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
2pmz G 11 PYLEEKVKQASNILPQKIVDDLKNLILNKEIIVTRDEIDKIFDLAIKEYSEGLIAPGEAIGIVAAQSVGEPGTQMT---------------LGLPRLIEIVDAKKVPSTPMMTIYLTDEYKRDRDKALEVARKLEY-------------------------------------------------------------------------------------------KRAIVQKKGDEYIILTDGSNLSGVLSVKGVDVAKVETNNIREIEEVFGIEAAREIIIREISKVLAEQGLDVDIRHILLIADVMTRTGIVRQIGRHGVTGEKNSVLARAAFEVTVKHLLDAAARGDVEEFKGVVENIIIGHPIKLGTGMVELTMRPILR 395
20 30 40 50 60 70 80 | - - | 110 120 130 140 | - - - - - - - - - 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390
86 102 146 238
Chain H from PDB Type:PROTEIN Length:74
aligned with RPOH_SULSO | Q980Q9 from UniProtKB/Swiss-Prot Length:84
Alignment length:74
18 28 38 48 58 68 78
RPOH_SULSO 9 IDPRIHYLVPKHEVLNIDEAYKILKELGIRPEQLPWIRASDPVARSINAKPGDIIRIIRKSQLYGEVVSYRYVI 82
SCOP domains -------------------------------------------------------------------------- SCOP domains
CATH domains 2pmzH00 H:9-82 [code=3.90.940.20, no name defined] CATH domains
Pfam domains -------------------------------------------------------------------------- Pfam domains
Sec.struct. author ..................hhhhhhhhh............................eeee.......eeee.... Sec.struct. author
SAPs(SNPs) -------------------------------------------------------------------------- SAPs(SNPs)
PROSITE -----RNA_POL_H_23KD------------------------------------------------------- PROSITE
Transcript -------------------------------------------------------------------------- Transcript
2pmz H 9 IDPRIHYLVPKHEVLNIDEAYKILKELGIRPEQLPWIRASDPVARSINAKPGDIIRIIRKSQLYGEVVSYRYVI 82
18 28 38 48 58 68 78
Chain K from PDB Type:PROTEIN Length:82
aligned with RPOK_SULSO | Q97ZJ9 from UniProtKB/Swiss-Prot Length:95
Alignment length:82
20 30 40 50 60 70 80 90
RPOK_SULSO 11 QDLHFNEVFISLWQNRLTRYEIARVISARALQLAMGAPALIDINNLSSTDVISIAEEEFRRGVLPITIRRRLPNGKIILLSL 92
SCOP domains ---------------------------------------------------------------------------------- SCOP domains
CATH domains ---------------------------------------------------------------------------------- CATH domains
Pfam domains ---------------------------------------------------------------------------------- Pfam domains
Sec.struct. author ..hhhhhhhhhhh....hhhhhhhhhhhhhhhhhh....................hhhhhh.....eeeee.....eeee.. Sec.struct. author
SAPs(SNPs) ---------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE -----------------RNA_POL_K_14KD -------------------------------------------------- PROSITE
Transcript ---------------------------------------------------------------------------------- Transcript
2pmz K 11 QDLHFNEVFISLWQNRLTRYEIARVISARALQLAMGAPALIDINNLSSTDVISIAEEEFRRGVLPITIRRRLPNGKIILLSL 92
20 30 40 50 60 70 80 90
Chain L from PDB Type:PROTEIN Length:92
aligned with RPOL_SULSO | Q980K0 from UniProtKB/Swiss-Prot Length:92
Alignment length:92
10 20 30 40 50 60 70 80 90
RPOL_SULSO 1 MEIRILKSESNYLELEIEGEDHTLGNLIAGTLRRISGVSFASYYQPHPLSDKIIVKILTDGSITPKDALLKAIENIRGMTSHYIDEIKGLTK 92
SCOP domains -------------------------------------------------------------------------------------------- SCOP domains
CATH domains -------------------------------------------------------------------------------------------- CATH domains
Pfam domains -------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author ....eeee....eeeeee....hhhhhhhhhhh......eeeee.......eeeeeee.....hhhhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
SAPs(SNPs) -------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE (2) ----------------RNA_POL_L_13KD PDB: L:17-48 -------------------------------------------- PROSITE (2)
Transcript -------------------------------------------------------------------------------------------- Transcript
2pmz L 1 MEIRILKSESNYLELEIEGEDHTLGNLIAGTLRRISGVSFASYYQPHPLSDKIIVKILTDGSITPKDALLKAIENIRGMTSHYIDEIKGLTK 92
10 20 30 40 50 60 70 80 90
Chain N from PDB Type:PROTEIN Length:64
aligned with RPON_SULSO | Q980Z8 from UniProtKB/Swiss-Prot Length:66
Alignment length:64
10 20 30 40 50 60
RPON_SULSO 1 MLIPIRCFTCGSLIADKWQSFITRVNAGENPGKVLDDLGVKRYCCRRMLLSHVDIINEVIHYTR 64
SCOP domains ---------------------------------------------------------------- SCOP domains
CATH domains 2pmzN00 N:1-64 Homeodomain-like CATH domains
Pfam domains ---------------------------------------------------------------- Pfam domains
Sec.struct. author .............hhhhhhhhhhhhhh..hhhhhhhh.....hhhhhhhhh...hhhhhh.... Sec.struct. author
SAPs(SNPs) ---------------------------------------------------------------- SAPs(SNPs)
PROSITE -RNA_POL_N_----------------------------------------------------- PROSITE
Transcript ---------------------------------------------------------------- Transcript
2pmz N 1 MLIPIRCFTCGSLIADKWQSFITRVNAGENPGKVLDDLGVKRYCCRRMLLSHVDIINEVIHYTR 64
10 20 30 40 50 60
Chain P from PDB Type:PROTEIN Length:43
aligned with RPOP_SULSO | Q97ZX7 from UniProtKB/Swiss-Prot Length:48
Alignment length:43
15 25 35 45
RPOP_SULSO 6 CGKCWKTFTDEQLKVLPGVRCPYCGYKIIFMVRKPTIKIVKAI 48
SCOP domains ------------------------------------------- SCOP domains
CATH domains ------------------------------------------- CATH domains
Pfam domains ------------------------------------------- Pfam domains
Sec.struct. author .....................................eeee.. Sec.struct. author
SAPs(SNPs) ------------------------------------------- SAPs(SNPs)
PROSITE ------------------------------------------- PROSITE
Transcript ------------------------------------------- Transcript
2pmz P 6 CGKCWKTFTDEQLKVLPGVRCPYCGYKIIFMVRKPTIKIVKAI 48
15 25 35 45
Chain Q from PDB Type:PROTEIN Length:776
aligned with RPOA1_SULSO | Q980R2 from UniProtKB/Swiss-Prot Length:880
Alignment length:876
13 23 33 43 53 63 73 83 93 103 113 123 133 143 153 163 173 183 193 203 213 223 233 243 253 263 273 283 293 303 313 323 333 343 353 363 373 383 393 403 413 423 433 443 453 463 473 483 493 503 513 523 533 543 553 563 573 583 593 603 613 623 633 643 653 663 673 683 693 703 713 723 733 743 753 763 773 783 793 803 813 823 833 843 853 863 873
RPOA1_SULSO 4 KNIKGIKFGILSPDEIRKMSVTAIITPDVYDEDGTPIEGSVMDPRLGVIEPGQKCPTCGNTLGNCPGHFGHIELVRPVIHVGLVKHIYEFLKATCRRCGRVKISEDEIEKYSRIYNAIKKRWPSAARRLTEYVKKTAMKAQVCPHCNEKQYKIKLEKPYNFYEERKEGVAKLTPSDIRERLEKIPDSDVEILGYDPTTSRPEWMILTVLPVPPITIRPSIMIESGIRAEDDLTHKLVDIVRINERLKESIDAGAPQLIIEDLWDLLQYHVATYFDNEIPGLPPSKHRSGRPLRTLAQRLKGKEGRFRGNLSGKRVDFSSRTVISPDPNISIDEVGVPEIIAKTLTVPERITPWNIEKLRQFVINGPDKWPGANYVIRPDGRRIDLRYVKDRKELASTLAPGYIIERHLIDGDIVLFNRQPSLHRISMMAHRVRVLKGLTFRLNLLVCPPYNADFDGDEMNLHVPQSEEAIAEAKEIMLVHKNIITPRYGGPIIGAAQDYISGAYLLTVKTTLLTKEEAQQILGVADVKIDLGEPAILAPREYYTGKQVISAFLPKDFNFHGQANVSSGPRLCKNEDCPHDSYVVIKNGILLEGVFDKKAIGNQQPESILHWLIKEYSDEYGKWLMDNLFRVFIRFVELQGFTMRLEDVSLGDDVKKEIYNEIDRAKVEVDNLIQKYKNGELEPIPGRTLEESLENYILDTLDKLRSTAGDIASKYLDPFNFAYVMARTGARGSVLNITQMAAMLGQQSVRGERIKRGYMTRTLPHFKPYDISPEARGFIYSSFRTGLKPTELFFHAAGGREGLVDTAVRTSQSGYMQRRLINALSDLRAEYDGTVRSLYGEVVQVAYGDDGVFPMYSAHGKTVDVNRIFERVVGWK 879
SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
Pfam domains (1) RNA_pol_Rpb1_1-2pmzQ01 Q:4- 313 -RNA_pol_Rpb1_2-2pmzQ03 Q:315-482 --RNA_pol_Rpb1_3-2pmzQ05 Q:485-651 ------------------------RNA_pol_Rpb1_4-2pmzQ07 Q:676-782 ------RNA_pol_Rpb1_5-2pmzQ09 Q:789-869 ---------- Pfam domains (1)
Pfam domains (2) RNA_pol_Rpb1_1-2pmzQ02 Q:4- 313 -RNA_pol_Rpb1_2-2pmzQ04 Q:315-482 --RNA_pol_Rpb1_3-2pmzQ06 Q:485-651 ------------------------RNA_pol_Rpb1_4-2pmzQ08 Q:676-782 ------RNA_pol_Rpb1_5-2pmzQ10 Q:789-869 ---------- Pfam domains (2)
Sec.struct. author .....ee....hhhhhhhhh.......--------------.........................................hhhhhhhhh..-----------------------------------------------------------------------------..hhhhhhhhhh..hhhhhhhhhh.........................---------.hhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhh..................hhhhh......hhhhhh.eee....eeeeeee.......eeeehhhhhhhheee......hhhhhhhhhhhh.........ee................hhhhhh....eeeee.....eeeee.....hhh.eeeeeeee.....eeehhhhhhhhh......eeeee...hhhhhhhhhhhh.hhhh.ee....ee.....hhhhhhhhhhh......hhhhhhhh......................hhhhhhh........eee.....................eee..........hhhhhh.....hhhhhhhhh...hhhhhhhhhhhhhhhhhhh...............hhhhhhhhhhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhh......hhhhhhhhhh...............................................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh............ee.....eee.hhhhh..hhhhh.....hhhhhhhhhh.... Sec.struct. author
SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
2pmz Q 4 KNIKGIKFGILSPDEIRKMSVTAIITP--------------MDPRLGVIEPGQKCPTCGNTLGNCPGHFGHIELVRPVIHVGLVKHIYEFLKA-----------------------------------------------------------------------------KLTPSDIRERLEKIPDSDVEILGYDPTTSRPEWMILTVLPVPPITIRPS---------EDDLTHKLVDIVRINERLKESIDAGAPQLIIEDLWDLLQYHVATYFDNEIPGLPPSKHRSGRPLRTLAQRLKGKEGRFRGNLSGKRVDFSSRTVISPDPNISIDEVGVPEIIAKTLTVPERITPWNIEKLRQFVINGPDKWPGANYVIRPDGRRIDLRYVKDRKELASTLAPGYIIERHLIDGDIVLFNRQPSLHRISMMAHRVRVLKGLTFRLNLLVCPPYNADFDGDEMNLHVPQSEEAIAEAKEIMLVHKNIITPRYGGPIIGAAQDYISGAYLLTVKTTLLTKEEAQQILGVADVKIDLGEPAILAPREYYTGKQVISAFLPKDFNFHGQANVSSGPRLCKNEDCPHDSYVVIKNGILLEGVFDKKAIGNQQPESILHWLIKEYSDEYGKWLMDNLFRVFIRFVELQGFTMRLEDVSLGDDVKKEIYNEIDRAKVEVDNLIQKYKNGELEPIPGRTLEESLENYILDTLDKLRSTAGDIASKYLDPFNFAYVMARTGARGSVLNITQMAAMLGQQSVRGERIKRGYMTRTLPHFKPYDISPEARGFIYSSFRTGLKPTELFFHAAGGREGLVDTAVRTSQSGYMQRRLINALSDLRAEYDGTVRSLYGEVVQVAYGDDGVFPMYSAHGKTVDVNRIFERVVGWK 879
13 23 | - - | 53 63 73 83 93 | - - - - - - - -| 183 193 203 213 |- 233 243 253 263 273 283 293 303 313 323 333 343 353 363 373 383 393 403 413 423 433 443 453 463 473 483 493 503 513 523 533 543 553 563 573 583 593 603 613 623 633 643 653 663 673 683 693 703 713 723 733 743 753 763 773 783 793 803 813 823 833 843 853 863 873
30 45 96 174 222 232
Chain R from PDB Type:PROTEIN Length:1090
aligned with Q980R1_SULSO | Q980R1 from UniProtKB/TrEMBL Length:649
Alignment length:1115
1
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - | 9 19 29 39 49 59 69 79 89 99 109 119 129 139 149 159 169 179 189 199 209 219 229 239 249 259 269 279 289 299 309 319 329 339 349 359 369 379 389 399 409 419 429 439 449 459 469 479 489 499 509 519 529 539 549 559 569 579 589 599 609 619 629 639
Q980R1_SULSO - ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MLYGINERIVEKTLYEMGVVPVEEVIRRVTEGGEDQNEYLKWSKVILNGRLIGYYQDGGELANKIRERRRKGEISDEVNVGHIVTDFINEVHVNCDSGRVRRPLIIVSNGNPLVTIEDIEKLESGAITFDDLVRQGKIEYLDAEEEENAYVALEPNDLTPDHTHLEIWSPAILGITASIIPYPEHNQSPRNTYQSAMAKQALGLYAANYQLRTDTRAHLLHYPQRPLVQTRALDIIGYTNRPAGNNAILAVMSFTGYNMEDSIIMNRSSVERGMYRSTFFRLYSTEEVKYPGGQEDKIVMPEAGVRGYKGKEYYRLLEDNGVVSPEVEVKGGDVLIGKVSPPRFLQEFKELSPEQAKRDTSIVTRHGEMGIVDLVLITETAEGNKLVKVRVRDLRIPTIGDKFASRHGQKGVIGMLIPQVDMPYTVKGVVPDIILNPHALPSRMTLGQIMEGIAGKYAALSGNIVDATPFYKTPIEQLQNEILRYGYLPDATEVVYDGRTGQKIKSRIYFGVVYYQKLHHMVADKLHARARGPVQILTRQPTEGRAREGGLRFGEMERDCLIGFGTAMLLKDRLLDNSDRTMIYVCDQCGYIGWYDKNKNKYVCPIHGDKSNLFPVTVSYAFKLLIQELMSMIISPRLVLEDKV 644
SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
Pfam domains (1) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- -----RNA_pol_Rpb2_4-2pmzR03 R:520-584 -------------------RNA_pol_Rpb2_5-2pmzR05 R:604-644 ----RNA_pol_Rpb2_6-2pmzR01 R:649-1022 -RNA_pol_Rpb2_7-2pmzR07 R:1024-1116 --- Pfam domains (1)
Pfam domains (2) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- -----RNA_pol_Rpb2_4-2pmzR04 R:520-584 -------------------RNA_pol_Rpb2_5-2pmzR06 R:604-644 ----RNA_pol_Rpb2_6-2pmzR02 R:649-1022 -RNA_pol_Rpb2_7-2pmzR08 R:1024-1116 --- Pfam domains (2)
Sec.struct. author ..hhhhhhhhhhhhh.......hhhhhhhhhhh...................eeee....................hhhhhh.............eeee........................hhhhhhhhhhhhhhh..........hhhhh.eee..ee....eeeeee..........eeeeee.........eeeeee....eee......eeehhhhhhhh...hhhhhhhhhh.....hhhhhhhhhhh.........hhhhhh......hhhhhhhhhhhhhhh............hhhhhhhhhhhhhhhh...................eehhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhh...hhhhhhhhh..............eee...hhhhhhhhhhh..ee.....................................................hhhhhhh...ee.....-------------.....eee.....ee.....hhhhhhhhhh.........eeee........eeee.......eeee.........hhhhhhh......hhhhhhhh..eeee...hhhhh....hhhhhh...............hhhhh.......hhhhhhhhhhhhhhh...............ee..................hhhhh..eeee...................hhhhhh......eeeeeee..........................................ee....eee.......------------......ee......eeeeeeeeee.....eeeeeeee..........ee..................ee...........hhhhhhhhh..hhhhhhhhhhh................hhhhhhhhhhhh..........ee...............eeeee...hhhhh..................hhhhh...eee...hhhhhh..................eeeee..........hhhhh...........eeeee.hhhhhhhhhhhhh.....ee...... Sec.struct. author
SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
2pmz R 5 LTIDERWRVIEAYFKSKGLVRQHLDSYNDFVRNKLQEIIDEQGEIPTEIPGLKVRLGKIRIGKPRVRESDRGEREISPMEARLRNLTYAAPLWLTMIPVENNIEAEPEEVYIGDLPIMLKSAIDPISQYTLDKLIEIGEDPKDPGGYFIVNGSERVIVTQEDLAPNRVLVDTGKTGSNITHTAKIISSTAGYRVPVTIERLKDGTFHVSFPAVPGKIPFVILMRALGILTDRDIVYAVSLDPEVQNELFPSLEQASSIANVDDALDFIGSRVAIGQKRENRIEKAQQIIDKYFLPHLGTSAEDRKKKAYYLAYAISKVIELYLGRREPDDKDHYANKRLRLAGDLFASLFRVAFKAFVKDLTYQLEKSKVRGRKLALKALVRPDIVTERIRHALATGNWVGGRTGVSQLLDRTNWLSMLSHLRRVISSLARGQPNFEARDLHGTQWGRMCPFETPEGPNSGLVKNLALMAQIAVGINERIVEKTLYEMGVVPVEEVI-------------LKWSKVILNGRLIGYYQDGGELANKIRERRRKGEISDEVNVGHIVTDFINEVHVNCDSGRVRRPLIIVSNGNPLVTIEDIEKLESGAITFDDLVRQGKIEYLDAEEEENAYVALEPNDLTPDHTHLEIWSPAILGITASIIPYPEHNQSPRNTYQSAMAKQALGLYAANYQLRTDTRAHLLHYPQRPLVQTRALDIIGYTNRPAGNNAILAVMSFTGYNMEDSIIMNRSSVERGMYRSTFFRLYSTEEVKYPGGQEDKIVMPEAGVRGYKGKEYYRLLEDNGVVSPEVEVKGGDVLIGKVSPPR------------AKRDTSIVTRHGEMGIVDLVLITETAEGNKLVKVRVRDLRIPTIGDKFASRHGQKGVIGMLIPQVDMPYTVKGVVPDIILNPHALPSRMTLGQIMEGIAGKYAALSGNIVDATPFYKTPIEQLQNEILRYGYLPDATEVVYDGRTGQKIKSRIYFGVVYYQKLHHMVADKLHARARGPVQILTRQPTEGRAREGGLRFGEMERDCLIGFGTAMLLKDRLLDNSDRTMIYVCDQCGYIGWYDKNKNKYVCPIHGDKSNLFPVTVSYAFKLLIQELMSMIISPRLVLEDKV 1119
14 24 34 44 54 64 74 84 94 104 114 124 134 144 154 164 174 184 194 204 214 224 234 244 254 264 274 284 294 304 314 324 334 344 354 364 374 384 394 404 414 424 434 444 454 464 474 484 494 | - -| 524 534 544 554 564 574 584 594 604 614 624 634 644 654 664 674 684 694 704 714 724 734 744 754 764 774 784 794 804 814 | - |834 844 854 864 874 884 894 904 914 924 934 944 954 964 974 984 994 1004 1014 1024 1034 1044 1054 1064 1074 1084 1094 1104 1114
501 515 818 831
Chain S from PDB Type:PROTEIN Length:264
aligned with RPOD_SULSO | P95989 from UniProtKB/Swiss-Prot Length:265
Alignment length:264
11 21 31 41 51 61 71 81 91 101 111 121 131 141 151 161 171 181 191 201 211 221 231 241 251 261
RPOD_SULSO 2 SINLLHKDDTRIDLVFEGYPLEFVNAIRRASMLYVPIMAVDDVYFIENNSPLYDEILAHRLALIPFMSEEALDTYRWPEECIECTENCEKCYTKIYIEAEAPNEPRMIYSKDIKSEDPSVVPISGDIPIVLLGTNQKISLEARLRLGYGKEHAKFIPVSLSVVRYYPKVEILANCEKAVNVCPEGVFELKDGKLSVKNELSCTLCEECLRYCNGSIRISFVEDKYILEIESVGSLKPERILLEAGKSIIRKIEELEKKLVEVVK 265
SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
Pfam domains (1) -----------RNA_pol_L-2pmzS01 S:13-254 ----------- Pfam domains (1)
Pfam domains (2) -----------RNA_pol_L-2pmzS02 S:13-254 ----------- Pfam domains (2)
Pfam domains (3) ------------------------------------------RNA_pol_A_bac-2pmzS03 S:44-157 ------------------------------------------------------------------------------------------------------------ Pfam domains (3)
Pfam domains (4) ------------------------------------------RNA_pol_A_bac-2pmzS04 S:44-157 ------------------------------------------------------------------------------------------------------------ Pfam domains (4)
Sec.struct. author ...eeee...eeee.....hhhhhhhhhhhhhh...eeeeeeeeeeee....hhhhhhhhhhh...hhhhhh.......................ee........eeee.hhh..............eeeee.....eeeeeeeeee..............eeeeeeee.......hhhhhh.........................hhhhhh....eeeeeeeeeeeee.....hhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
PROSITE (2) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE (2)
PROSITE (3) ------------------------RNA_POL_D_30KD PDB: S:26-66 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (3)
Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
2pmz S 2 SINLLHKDDTRIDLVFEGYPLEFVNAIRRASMLYVPIMAVDDVYFIENNSPLYDEILAHRLALIPFMSEEALDTYRWPEECIECTENCEKCYTKIYIEAEAPNEPRMIYSKDIKSEDPSVVPISGDIPIVLLGTNQKISLEARLRLGYGKEHAKFIPVSLSVVRYYPKVEILANCEKAVNVCPEGVFELKDGKLSVKNELSCTLCEECLRYCNGSIRISFVEDKYILEIESVGSLKPERILLEAGKSIIRKIEELEKKLVEVVK 265
11 21 31 41 51 61 71 81 91 101 111 121 131 141 151 161 171 181 191 201 211 221 231 241 251 261
Chain T from PDB Type:PROTEIN Length:176
aligned with Q980A3_SULSO | Q980A3 from UniProtKB/TrEMBL Length:180
Alignment length:180
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180
Q980A3_SULSO 1 MYKLIKARSIVRIPPNEFGKPLNEIALNELRQQYQEKILKDLGLVLAILNVKTSEEGILVFGDGATYHEVEFDMITYVPVVQEVVEGEVLQVDNYGIFVNLGPMDGLVHISQITDDTLKYDNVRGIIFGEKSKKVIQKGDKVRARVISVASTVTGRLPRIALTMRQPYLGKLEWITQTKK 180
SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
CATH domains 2pmzT01 T:1-81 DNA-directed RNA polymerase ii subunit; domain 1 2pmzT02 T:82-180 Nucleic acid-binding proteins CATH domains
Pfam domains (1) -------SHS2_Rpb7-N-2pmzT03 T:8-77 -S1-2pmzT01 T:79-153 --------------------------- Pfam domains (1)
Pfam domains (2) -------SHS2_Rpb7-N-2pmzT04 T:8-77 -S1-2pmzT02 T:79-153 --------------------------- Pfam domains (2)
Sec.struct. author .eeeeeeeeeeeehhhhh..hhhhhhhhhhhh...........eeeee.................eeeeeeeeeeee......ee...eeee...eeeee....eeeee..................................ee........----..ee.........hhhhhh.... Sec.struct. author
SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
2pmz T 1 MYKLIKARSIVRIPPNEFGKPLNEIALNELRQQYQEKILKDLGLVLAILNVKTSEEGILVFGDGATYHEVEFDMITYVPVVQEVVEGEVLQVDNYGIFVNLGPMDGLVHISQITDDTLKYDNVRGIIFGEKSKKVIQKGDKVRARVISVASTV----PRIALTMRQPYLGKLEWITQTKK 180
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 | 160 170 180
153 158
Chain U from PDB Type:PROTEIN Length:89
aligned with Q9UXD9_SULSF | Q9UXD9 from UniProtKB/TrEMBL Length:113
Alignment length:89
10 20 30 40 50 60 70 80
Q9UXD9_SULSF 1 MSSVYIVEEHYIPYSVAKKLLTDVIRSGGSSNLLQRTYDYLNSVEKCDAESAQKVIEELSNIVSREDVRAILASICPTTSDEVRSILVM 89
SCOP domains ----------------------------------------------------------------------------------------- SCOP domains
CATH domains ----------------------------------------------------------------------------------------- CATH domains
Pfam domains (1) ----------RNA_pol_Rpb4-2pmzU01 U:11-89 Pfam domains (1)
Pfam domains (2) ----------RNA_pol_Rpb4-2pmzU02 U:11-89 Pfam domains (2)
Sec.struct. author ....eeeeeeee..hhhhhhhhh.......hhhhhhhhhhh......hhhhhhhhh........hhhhhhhhhhhh............. Sec.struct. author
SAPs(SNPs) ----------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE ----------------------------------------------------------------------------------------- PROSITE
Transcript ----------------------------------------------------------------------------------------- Transcript
2pmz U 1 MSSVYIVEEHYIPYSVAKKLLTDVIRSGGSSNLLQRTYDYLNSVEKCDAESAQKVIEELSNIVSREDVRAILASICPTTSDEVRSILVM 89
10 20 30 40 50 60 70 80
Chain V from PDB Type:PROTEIN Length:74
aligned with RPOH_SULSO | Q980Q9 from UniProtKB/Swiss-Prot Length:84
Alignment length:74
18 28 38 48 58 68 78
RPOH_SULSO 9 IDPRIHYLVPKHEVLNIDEAYKILKELGIRPEQLPWIRASDPVARSINAKPGDIIRIIRKSQLYGEVVSYRYVI 82
SCOP domains -------------------------------------------------------------------------- SCOP domains
CATH domains 2pmzV00 V:9-82 [code=3.90.940.20, no name defined] CATH domains
Pfam domains (1) RNA_pol_Rpb5_C-2pmzV01 V:9-82 Pfam domains (1)
Pfam domains (2) RNA_pol_Rpb5_C-2pmzV02 V:9-82 Pfam domains (2)
Sec.struct. author ..................hhhhhhhhh............................eeee.......eeee.... Sec.struct. author
SAPs(SNPs) -------------------------------------------------------------------------- SAPs(SNPs)
PROSITE -----RNA_POL_H_23KD------------------------------------------------------- PROSITE
Transcript -------------------------------------------------------------------------- Transcript
2pmz V 9 IDPRIHYLVPKHEVLNIDEAYKILKELGIRPEQLPWIRASDPVARSINAKPGDIIRIIRKSQLYGEVVSYRYVI 82
18 28 38 48 58 68 78
Chain W from PDB Type:PROTEIN Length:82
aligned with RPOK_SULSO | Q97ZJ9 from UniProtKB/Swiss-Prot Length:95
Alignment length:82
20 30 40 50 60 70 80 90
RPOK_SULSO 11 QDLHFNEVFISLWQNRLTRYEIARVISARALQLAMGAPALIDINNLSSTDVISIAEEEFRRGVLPITIRRRLPNGKIILLSL 92
SCOP domains ---------------------------------------------------------------------------------- SCOP domains
CATH domains ---------------------------------------------------------------------------------- CATH domains
Pfam domains (1) ---------RNA_pol_Rpb6-2pmzW01 W:20-78 -------------- Pfam domains (1)
Pfam domains (2) ---------RNA_pol_Rpb6-2pmzW02 W:20-78 -------------- Pfam domains (2)
Sec.struct. author ..hhhhhhhhhhh....hhhhhhhhhhhhhhhhhh....................hhhhhh.....eeeee.....eeee.. Sec.struct. author
SAPs(SNPs) ---------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE -----------------RNA_POL_K_14KD -------------------------------------------------- PROSITE
Transcript ---------------------------------------------------------------------------------- Transcript
2pmz W 11 QDLHFNEVFISLWQNRLTRYEIARVISARALQLAMGAPALIDINNLSSTDVISIAEEEFRRGVLPITIRRRLPNGKIILLSL 92
20 30 40 50 60 70 80 90
Chain X from PDB Type:PROTEIN Length:92
aligned with RPOL_SULSO | Q980K0 from UniProtKB/Swiss-Prot Length:92
Alignment length:92
10 20 30 40 50 60 70 80 90
RPOL_SULSO 1 MEIRILKSESNYLELEIEGEDHTLGNLIAGTLRRISGVSFASYYQPHPLSDKIIVKILTDGSITPKDALLKAIENIRGMTSHYIDEIKGLTK 92
SCOP domains -------------------------------------------------------------------------------------------- SCOP domains
CATH domains -------------------------------------------------------------------------------------------- CATH domains
Pfam domains (1) ------------RNA_pol_L-2pmzX01 X:13-81 ----------- Pfam domains (1)
Pfam domains (2) ------------RNA_pol_L-2pmzX02 X:13-81 ----------- Pfam domains (2)
Sec.struct. author ....eeee....eee.......hhhhhhhhhhh......eeeee.........eeeee.....hhhhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
SAPs(SNPs) -------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE (2) ----------------RNA_POL_L_13KD PDB: X:17-48 -------------------------------------------- PROSITE (2)
Transcript -------------------------------------------------------------------------------------------- Transcript
2pmz X 1 MEIRILKSESNYLELEIEGEDHTLGNLIAGTLRRISGVSFASYYQPHPLSDKIIVKILTDGSITPKDALLKAIENIRGMTSHYIDEIKGLTK 92
10 20 30 40 50 60 70 80 90
Chain Y from PDB Type:PROTEIN Length:64
aligned with RPON_SULSO | Q980Z8 from UniProtKB/Swiss-Prot Length:66
Alignment length:64
10 20 30 40 50 60
RPON_SULSO 1 MLIPIRCFTCGSLIADKWQSFITRVNAGENPGKVLDDLGVKRYCCRRMLLSHVDIINEVIHYTR 64
SCOP domains ---------------------------------------------------------------- SCOP domains
CATH domains 2pmzY00 Y:1-64 Homeodomain-like CATH domains
Pfam domains (1) RNA_pol_N-2pmzY01 Y:1-60 ---- Pfam domains (1)
Pfam domains (2) RNA_pol_N-2pmzY02 Y:1-60 ---- Pfam domains (2)
Sec.struct. author .............hhhhh.hhhhhhhh..hhhhhhhh.....hhhhhhhhh...hhhhhh.... Sec.struct. author
SAPs(SNPs) ---------------------------------------------------------------- SAPs(SNPs)
PROSITE -RNA_POL_N_----------------------------------------------------- PROSITE
Transcript ---------------------------------------------------------------- Transcript
2pmz Y 1 MLIPIRCFTCGSLIADKWQSFITRVNAGENPGKVLDDLGVKRYCCRRMLLSHVDIINEVIHYTR 64
10 20 30 40 50 60
Chain Z from PDB Type:PROTEIN Length:43
aligned with RPOP_SULSO | Q97ZX7 from UniProtKB/Swiss-Prot Length:48
Alignment length:43
15 25 35 45
RPOP_SULSO 6 CGKCWKTFTDEQLKVLPGVRCPYCGYKIIFMVRKPTIKIVKAI 48
SCOP domains ------------------------------------------- SCOP domains
CATH domains ------------------------------------------- CATH domains
Pfam domains (1) DNA_RNApol_7kD-2pmzZ01 Z:6-38 ---------- Pfam domains (1)
Pfam domains (2) DNA_RNApol_7kD-2pmzZ02 Z:6-38 ---------- Pfam domains (2)
Sec.struct. author .....................................eeee.. Sec.struct. author
SAPs(SNPs) ------------------------------------------- SAPs(SNPs)
PROSITE ------------------------------------------- PROSITE
Transcript ------------------------------------------- Transcript
2pmz Z 6 CGKCWKTFTDEQLKVLPGVRCPYCGYKIIFMVRKPTIKIVKAI 48
15 25 35 45
| Legend: |
|
→ Mismatch |
(orange background) |
| |
- |
→ Gap |
(green background, '-', border residues have a numbering label) |
| |
|
→ Modified Residue |
(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name) |
| |
x |
→ Chemical Group |
(purple background, 'x', labelled with number + name, e.g. ACE or NH2) |
| |
extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|' |
Description
