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(-) Description

Title :  CRYSTAL STRUCTURE OF PUTATIVE MG2+ AND CO2+ TRANSPORTER(CORC) ASSOCIATED REGION FROM NEISSERIA MENINGITIDIS MC58
 
Authors :  B. Nocek, E. Duggan, M. Gu, A. Joachimiak, Midwest Center For Struct Genomics (Mcsg)
Date :  19 Apr 07  (Deposition) - 22 May 07  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.70
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,B,C,D  (1x)
Biol. Unit 2:  A (1x),B (1x),C (1x),D (1x)
Keywords :  Corc-Associated Region, Mcsg, Psi2, Structural Genomics, Protein Structure Initiative, Midwest Center For Structural Genomics, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  B. Nocek, E. Duggan, M. Gu, A. Joachimiak
Structure Of Putative Mg2+ And Co2+ Transporter(Corc)Associated Region From Neisseria Meningitidis Mc58.
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - UNCHARACTERIZED PROTEIN
    Chains: A, B, C, D
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PMCSG7
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: RESIDUES 187-274
    Gene: NMB0537
    Organism Scientific: NEISSERIA MENINGITIDIS
    Organism Taxid: 122586
    Strain: MC58

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): ABCD
Biological Unit 2 (1x): A (1x)B (1x)C (1x)D (1x)

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 25)

Asymmetric Unit (4, 25)
No.NameCountTypeFull Name
1ACT6Ligand/IonACETATE ION
2GOL2Ligand/IonGLYCEROL
3MSE4Mod. Amino AcidSELENOMETHIONINE
4ZN13Ligand/IonZINC ION
Biological Unit 1 (3, 12)
No.NameCountTypeFull Name
1ACT6Ligand/IonACETATE ION
2GOL2Ligand/IonGLYCEROL
3MSE4Mod. Amino AcidSELENOMETHIONINE
4ZN-1Ligand/IonZINC ION
Biological Unit 2 (2, 6)
No.NameCountTypeFull Name
1ACT4Ligand/IonACETATE ION
2GOL-1Ligand/IonGLYCEROL
3MSE2Mod. Amino AcidSELENOMETHIONINE
4ZN-1Ligand/IonZINC ION

(-) Sites  (21, 21)

Asymmetric Unit (21, 21)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREASP B:75 , ARG B:78 , HIS B:80 , ZN B:710 , HOH B:918 , ASP D:42BINDING SITE FOR RESIDUE ACT B 801
02AC2SOFTWAREHIS B:54 , LEU B:55 , VAL B:57 , GLU B:60 , ZN B:709BINDING SITE FOR RESIDUE ACT B 802
03AC3SOFTWARELYS A:88 , GLU C:24 , GLU C:26 , ASP C:27BINDING SITE FOR RESIDUE ACT C 801
04AC4SOFTWAREGLU B:39 , ZN B:708 , ARG C:78 , LEU C:79 , HIS C:80 , HOH C:816BINDING SITE FOR RESIDUE ACT C 803
05AC5SOFTWAREASP A:7 , GLU B:24 , ASP C:7 , HIS C:10BINDING SITE FOR RESIDUE ZN C 701
06AC6SOFTWAREGLU A:24 , ASP B:7 , ASP D:7 , HIS D:10BINDING SITE FOR RESIDUE ZN D 702
07AC7SOFTWAREGLU A:26 , ASP A:42 , HOH A:732 , HIS D:20BINDING SITE FOR RESIDUE ZN A 703
08AC8SOFTWAREHIS A:54 , GLU A:60 , HOH A:785 , HOH B:926BINDING SITE FOR RESIDUE ZN A 704
09AC9SOFTWAREHIS A:10 , HOH A:758 , HOH A:796 , HOH A:821 , HOH A:827BINDING SITE FOR RESIDUE ZN A 705
10BC1SOFTWAREASP B:7 , HIS B:10 , HIS B:20 , HOH B:869 , HOH B:871 , GLU D:39BINDING SITE FOR RESIDUE ZN B 706
11BC2SOFTWAREGLU B:26 , ASP B:42 , HOH B:808 , HIS C:20BINDING SITE FOR RESIDUE ZN B 707
12BC3SOFTWAREGLU B:39 , HIS C:80 , ACT C:803 , HOH C:916BINDING SITE FOR RESIDUE ZN B 708
13BC4SOFTWAREHIS B:54 , GLU B:60 , ACT B:802 , HOH B:880BINDING SITE FOR RESIDUE ZN B 709
14BC5SOFTWAREASP B:75 , HIS B:80 , ACT B:801 , ASP D:42BINDING SITE FOR RESIDUE ZN B 710
15BC6SOFTWAREASP A:75 , ARG A:77 , HIS A:80 , GLU D:35 , ACT D:801BINDING SITE FOR RESIDUE ZN D 711
16BC7SOFTWAREGLU A:39 , HOH A:742 , HOH A:774 , ASP D:75 , HIS D:80BINDING SITE FOR RESIDUE ZN D 712
17BC8SOFTWAREHIS C:54 , GLU C:60 , HIS D:54 , GLU D:60BINDING SITE FOR RESIDUE ZN C 713
18BC9SOFTWAREARG A:73 , ASP A:75 , ARG A:77 , HIS A:80 , ASN D:29 , THR D:30 , GLU D:35 , ZN D:711BINDING SITE FOR RESIDUE ACT D 801
19CC1SOFTWAREHIS A:20 , HIS A:80 , HOH A:773BINDING SITE FOR RESIDUE ACT D 802
20CC2SOFTWAREHIS B:10 , ALA B:11 , ARG B:18BINDING SITE FOR RESIDUE GOL A 89
21CC3SOFTWAREGLU D:51 , HOH D:885BINDING SITE FOR RESIDUE GOL A 90

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2PLI)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2PLI)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2PLI)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2PLI)

(-) Exons   (0, 0)

(no "Exon" information available for 2PLI)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:84
 aligned with Q9K0P8_NEIMB | Q9K0P8 from UniProtKB/TrEMBL  Length:274

    Alignment length:84
                                   200       210       220       230       240       250       260       270    
         Q9K0P8_NEIMB   191 SADNIHAVSSERWRIHAATEIEDINTFFGTEYSSEEADTIGGLVIQELGHLPVRGEKVLIGGLQFTVARADNRRLHTLMATRVK 274
               SCOP domains d2plia1 A:5-88 Uncharacterized protein NMB0537                                       SCOP domains
               CATH domains 2pliA00 A:5-88  [code=3.30.465.10, no name defined]                                  CATH domains
               Pfam domains ------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....eeeee..eeeee...hhhhhhhhhh.........hhhhhhhhhhh.......eeee..eeeeeeee....eeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------ Transcript
                 2pli A   5 SADNIHAVSSERWRIHAATEIEDINTFFGTEYSSEEADTIGGLVIQELGHLPVRGEKVLIGGLQFTVARADNRRLHTLmATRVK  88
                                    14        24        34        44        54        64        74        84    
                                                                                                         83-MSE 


Chain B from PDB  Type:PROTEIN  Length:82
 aligned with Q9K0P8_NEIMB | Q9K0P8 from UniProtKB/TrEMBL  Length:274

    Alignment length:82
                                   201       211       221       231       241       251       261       271  
         Q9K0P8_NEIMB   192 ADNIHAVSSERWRIHAATEIEDINTFFGTEYSSEEADTIGGLVIQELGHLPVRGEKVLIGGLQFTVARADNRRLHTLMATRV 273
               SCOP domains d2plib_ B: Uncharacterized protein NMB0537                                         SCOP domains
               CATH domains 2pliB00 B:6-87  [code=3.30.465.10, no name defined]                                CATH domains
               Pfam domains ---------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeee..eeeee...hhhhhhhhhh.........hhhhhhhhhhh.......eeee..eeeeeeee....eeeeeeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------- Transcript
                 2pli B   6 ADNIHAVSSERWRIHAATEIEDINTFFGTEYSSEEADTIGGLVIQELGHLPVRGEKVLIGGLQFTVARADNRRLHTLmATRV  87
                                    15        25        35        45        55        65        75       |85  
                                                                                                        83-MSE


Chain C from PDB  Type:PROTEIN  Length:81
 aligned with Q9K0P8_NEIMB | Q9K0P8 from UniProtKB/TrEMBL  Length:274

    Alignment length:81
                                   202       212       222       232       242       252       262       272 
         Q9K0P8_NEIMB   193 DNIHAVSSERWRIHAATEIEDINTFFGTEYSSEEADTIGGLVIQELGHLPVRGEKVLIGGLQFTVARADNRRLHTLMATRV 273
               SCOP domains d2plic_ C: Uncharacterized protein NMB0537                                        SCOP domains
               CATH domains 2pliC00 C:7-87  [code=3.30.465.10, no name defined]                               CATH domains
               Pfam domains --------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee..eeeee...hhhhhhhhhh.........hhhhhhhhhhh.......eeee..eeeeeeee....eeeeeeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------- Transcript
                 2pli C   7 DNIHAVSSERWRIHAATEIEDINTFFGTEYSSEEADTIGGLVIQELGHLPVRGEKVLIGGLQFTVARADNRRLHTLmATRV  87
                                    16        26        36        46        56        66        76      | 86 
                                                                                                       83-MSE


Chain D from PDB  Type:PROTEIN  Length:81
 aligned with Q9K0P8_NEIMB | Q9K0P8 from UniProtKB/TrEMBL  Length:274

    Alignment length:81
                                   202       212       222       232       242       252       262       272 
         Q9K0P8_NEIMB   193 DNIHAVSSERWRIHAATEIEDINTFFGTEYSSEEADTIGGLVIQELGHLPVRGEKVLIGGLQFTVARADNRRLHTLMATRV 273
               SCOP domains d2plid_ D: Uncharacterized protein NMB0537                                        SCOP domains
               CATH domains 2pliD00 D:7-87  [code=3.30.465.10, no name defined]                               CATH domains
           Pfam domains (1) ---CorC_HlyC-2pliD01 D:10-87                                                      Pfam domains (1)
           Pfam domains (2) ---CorC_HlyC-2pliD02 D:10-87                                                      Pfam domains (2)
           Pfam domains (3) ---CorC_HlyC-2pliD03 D:10-87                                                      Pfam domains (3)
           Pfam domains (4) ---CorC_HlyC-2pliD04 D:10-87                                                      Pfam domains (4)
         Sec.struct. author ..eeeee..eeeee...hhhhhhhhhh.........hhhhhhhhhhh.......eeee..eeeeeeee....eeeeeeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------- Transcript
                 2pli D   7 DNIHAVSSERWRIHAATEIEDINTFFGTEYSSEEADTIGGLVIQELGHLPVRGEKVLIGGLQFTVARADNRRLHTLmATRV  87
                                    16        26        36        46        56        66        76      | 86 
                                                                                                       83-MSE
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 4)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (1, 4)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (1, 4)

Asymmetric Unit
(-)
Clan: no clan defined [family: CorC_HlyC] (12)

(-) Gene Ontology  (5, 5)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D   (Q9K0P8_NEIMB | Q9K0P8)
molecular function
    GO:0003824    catalytic activity    Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
    GO:0050660    flavin adenine dinucleotide binding    Interacting selectively and non-covalently with FAD, flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes, in either the oxidized form, FAD, or the reduced form, FADH2.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0016614    oxidoreductase activity, acting on CH-OH group of donors    Catalysis of an oxidation-reduction (redox) reaction in which a CH-OH group act as a hydrogen or electron donor and reduces a hydrogen or electron acceptor.
biological process
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.

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