2PLG - JenaLib

Asym.Unit - manually (Jmol Viewer)

Asymmetric Unit (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Biological Unit 3 (Jmol Viewer)

Title :   CRYSTAL STRUCTURE OF T110839 PROTEIN FROM SYNECHOCOCCUS ELONGATUS

Authors :   M. Madegowda, S. Eswaramoorthy, S. K. Burley, S. Swaminathan, New York Sgx Research Center For Structural Genomics (Nysgxrc)

Date :   19 Apr 07 (Deposition) - 01 May 07 (Release) - 24 Feb 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.60

Chains :   Asym. Unit : A,B
Biol. Unit 1: A,B  (1x)
Biol. Unit 2: A (2x),B (2x)
Biol. Unit 3: A,B  (2x)

Keywords :   Hypothetical, Uncharacterized, Duf1821, 10450C, Nysgxrc, Psi-2, Structural Genomics, Protein Structure Initiative, New York Sgx Research Center For Structural Genomics, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   M. Madegowda, S. Eswaramoorthy, S. K. Burley, S. Swaminathan
Crystal Structure Of T110839 Protein From Synechococcus Elongatus.
To Be Published
PubMed: search
(for further references see the PDB file header)

Molecule 1 - TLL0839 PROTEIN
	Chains	:	A, B
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI BL21(DE3)
	Expression System Plasmid	:	PSGX3(BC)
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	469008
	Expression System Vector Type	:	PLASMID
	Gene	:	TLL0839
	Organism Scientific	:	SYNECHOCOCCUS ELONGATUS
	Organism Taxid	:	32046
	Strain	:	BP-1

		1	2
Asymmetric Unit	:	A	B
Biological Unit 1 (1x)	:	A	B
Biological Unit 2 (2x)	:	A (2x)	B (2x)
Biological Unit 3 (2x)	:	A	B

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (1, 4)

No.	Name	Count	Type	Full Name
1	MSE	4	Mod. Amino Acid	SELENOMETHIONINE

Biological Unit 1 (1, 4)

No.	Name	Count	Type	Full Name
1	MSE	4	Mod. Amino Acid	SELENOMETHIONINE

Biological Unit 2 (1, 4)

No.	Name	Count	Type	Full Name
1	MSE	4	Mod. Amino Acid	SELENOMETHIONINE

Biological Unit 3 (1, 8)

No.	Name	Count	Type	Full Name
1	MSE	8	Mod. Amino Acid	SELENOMETHIONINE

(no "Site" information available for 2PLG)

(no "SS Bond" information available for 2PLG)

Asymmetric Unit

No.	Residues
1	Leu A:83	-	Pro A:84
2	Leu B:83	-	Pro B:84

(no "SAP(SNP)/Variant" information available for 2PLG)

(no "PROSITE Motif" information available for 2PLG)

(no "Exon" information available for 2PLG)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:152
 aligned with Q8DKM0_THEEB | Q8DKM0 from UniProtKB/TrEMBL  Length:153

    Alignment length:152
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150  
         Q8DKM0_THEEB     1 MTMVSEVQPVSPASLDAPLENAVEIIETVISSLHQGDAPLVGQTDSGKIWMFRYGSAEVFVQLSGHTEEDFLTIWSPVLPLPVADELALYRKLLTLNWLTTFEAHFAIAEEQVQVVASRTLGGITAGEISRLITIVATLADDYDDALRAEFK 152
               SCOP domains d2plga1 A:3-154 Uncharacterized protein Tll0839                                                                                                          SCOP domains
               CATH domains --------------------2plgA01 A:23-154  [code=3.30.1460.10, no name defined]                                                                               CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....................hhhhhhhhhhhhhh.....eeeee..eeeeeeee..eeeeeee.......eeeeeeeeee....hhhhhhhhhhhhh.......eeeee..eeeeeeeee....hhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2plg A   3 LTmVSEVQPVSPASLDAPLENAVEIIETVISSLHQGDAPLVGQTDSGKIWmFRYGSAEVFVQLSGHTEEDFLTIWSPVLPLPVADELALYRKLLTLNWLTTFEAHFAIAEEQVQVVASRTLGGITAGEISRLITIVATLADDYDDALRAEFK 154
                              |     12        22        32        42        52|       62        72        82        92       102       112       122       132       142       152  
                              |                                              53-MSE                                                                                                 
                              5-MSE

Chain B from PDB  Type:PROTEIN  Length:147
 aligned with Q8DKM0_THEEB | Q8DKM0 from UniProtKB/TrEMBL  Length:153

    Alignment length:153
                             1                                                                                                                                                       
                             |       9        19        29        39        49        59        69        79        89        99       109       119       129       139       149   
         Q8DKM0_THEEB     - -MTMVSEVQPVSPASLDAPLENAVEIIETVISSLHQGDAPLVGQTDSGKIWMFRYGSAEVFVQLSGHTEEDFLTIWSPVLPLPVADELALYRKLLTLNWLTTFEAHFAIAEEQVQVVASRTLGGITAGEISRLITIVATLADDYDDALRAEFK 152
               SCOP domains d2plgb_ B:       Uncharacterized protein Tll0839                                                                                                          SCOP domains
               CATH domains 2plgB00 B:2      -154  [code=3.30.1460.10, no name defined]                                                                                               CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee....------....hhhhhhhhhhhhhh.....eeeee..eeeeeeee..eeeeeee.......eeeeeeeeee....hhhhhhhhhhhhh.......eeeee..eeeeeeeee....hhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2plg B   2 SLTmVSEVQPV------APLENAVEIIETVISSLHQGDAPLVGQTDSGKIWmFRYGSAEVFVQLSGHTEEDFLTIWSPVLPLPVADELALYRKLLTLNWLTTFEAHFAIAEEQVQVVASRTLGGITAGEISRLITIVATLADDYDDALRAEFK 154
                               |    11|      |21        31        41        51 |      61        71        81        91       101       111       121       131       141       151   
                               5-MSE 12     19                                53-MSE

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Alpha and beta proteins (a+b) (23004)

Fold: Secretion chaperone-like (60)

Superfamily: Type III secretory system chaperone-like (19)

Family: Tll0839-like (1)

Protein domain: Uncharacterized protein Tll0839 (1)

Synechococcus elongatus [TaxId: 32046] (1)

1a	d2plga1	A:3-154
1b	d2plgb_	B:

Asymmetric Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Alpha Beta (26913)

Architecture: 2-Layer Sandwich (8480)

Topology: Yope Regulator; Chain: A, (26)

Homologous Superfamily: [code=3.30.1460.10, no name defined] (12)

Synechococcus elongatus. Organism_taxid: 32046. Strain: bp-1. (1)

1a	2plgA01	A:23-154
1b	2plgB00	B:2-154

(no "Pfam Domain" information available for 2PLG)

Asymmetric Unit(hide GO term definitions)

(no "Gene Ontology" information available for 2PLG)

Asymmetric Unit
	Complete Structure
		Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
		WebMol \| AstexViewer[tm]@PDBe (Java Applets, require no local installation except for Java; loading may be slow)
		STRAP (Java WebStart application, automatic local installation, requires Java; full application with system access!)
		RasMol (require local installation)
		Molscript (VRML) (requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)

	Ligands, Modified Residues, Ions
		MSE	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]

	Sites
(no "Sites" information available for 2plg)

	Cis Peptide Bonds
		Leu A:83 - Pro A:84	[ RasMol ]
		Leu B:83 - Pro B:84	[ RasMol ]

Biological Units
	Complete Structure
		Biological Unit 1	[ Jena3D ]
		Biological Unit 2	[ Jena3D ]
		Biological Unit 3	[ Jena3D ]

Jmol
	protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick [ Asym. Unit PNG format \| Biol. Unit 1 PNG format \| Biol. Unit 2 PNG format \| Biol. Unit 3 PNG format ](automatic orientation, automatically generated)
Molscript
	protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick [ mono PDF format \| stereo PDF format ](default orientation, automatically generated)

Access by PDB/NDB ID
	2plg
		Family and Domain Information	:	ProDom \| SYSTERS
		General Structural Information	:	GlycoscienceDB \| MMDB \| NDB \| OCA \| PDB \| PDBe \| PDBj \| PDBsum \| PDBWiki \| PQS \| PROTEOPEDIA
		Orientation in Membranes	:	OPM
		Protein Surface	:	SURFACE
		Secondary Structure	:	DSSP (structure derived) \| HSSP (homology derived)
		Structural Genomics	:	GeneCensus
		Structural Neighbours	:	CE \| VAST
		Structure Classification	:	CATH \| Dali \| SCOP
		Validation and Original Data	:	BMRB Data View \| BMRB Restraints Grid \| EDS \| PROCHECK \| RECOORD \| WHAT_CHECK

Access by UniProt ID/Accession number
	Q8DKM0_THEEB \| Q8DKM0
		Comparative Protein Structure Models	:	ModBase
		Genomic Information	:	Ensembl
		Protein-protein Interaction	:	DIP
		Sequence, Family and Domain Information	:	InterPro \| Pfam \| SMART \| UniProtKB/TrEMBL

Access by Enzyme Classificator (EC Number)
	(no 'Enzyme Classificator' available)
		General Enzyme Information	:	BRENDA \| EC-PDB \| Enzyme \| IntEnz
		Pathway	:	KEGG \| MetaCyc

Access by Disease Identifier (MIM ID)
	(no 'MIM ID' available)
		Disease Information	:	OMIM

Access by GenAge ID
	(no 'GenAge ID' available)
		Age Related Information	:	GenAge

Access by PDB/NDB ID
		Domain Information	:	XDom
		Interatomic Contacts of Structural Units	:	CSU
		Ligand-protein Contacts	:	LPC
		Protein Cavities	:	castP
		Sequence and Secondary Structure	:	PDBCartoon
		Structure Alignment	:	STRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
		Structure and Sequence Browser	:	STING

Access by UniProt ID/Accession number
	Q8DKM0_THEEB \| Q8DKM0
		Protein Disorder Prediction	:	DisEMBL \| FoldIndex \| GLOBPLOT (for more information see DisProt)

(no "Entries Sharing at Least One Protein Chain" available for 2PLG)

(no "Related Entries Specified in the PDB File" available for 2PLG)

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (1, 4)

Sites (0, 0)

SS Bonds (0, 0)

Cis Peptide Bonds (2, 2)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Classification and Annotation

SCOP Domains (1, 2)

CATH Domains (1, 2)

Pfam Domains (0, 0)

Gene Ontology (0, 0)

Visualization

Interactive Views

Still Images

Databases and Analysis Tools

Databases

Analysis Tools

Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File