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(-) Description

Title :  CRYSTAL STRUCTURE OF Q88U62_LACPL FROM LACTOBACILLUS PLANTARUM. NORTHEAST STRUCTURAL GENOMICS TARGET LPR71
 
Authors :  J. Benach, M. Su, J. Seetharaman, F. Forouhar, C. X. Chen, K. Cunningham, L-C. Ma, L. Owens, M. Baran, T. B. Acton, G. T. Montelione, L. Tong, J. F. Hunt, Northeast Structural Genomics Consortium (Nesg)
Date :  16 Apr 07  (Deposition) - 01 May 07  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.80
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  B,C  (1x)
Biol. Unit 2:  A  (2x)
Biol. Unit 3:  D  (2x)
Keywords :  Lpr71, Nesg, Structural Genomics, Psi-2, Protein Structure Initiative, Northeast Structural Genomics Consortium, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. Benach, M. Su, J. Seetharaman, F. Forouhar, C. X. Chen, K. Cunningham, L-C. Ma, L. Owens, M. Baran, T. B. Acton, G. T. Montelione, L. Tong, J. F. Hunt
Crystal Structure Of Q88U62_lacpl From Lactobacillus Plantarum.
To Be Published
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - UNCHARACTERIZED PROTEIN LP_2664
    Atcc: BAA-793
    Chains: A, B, C, D
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET21
    Expression System Strain: BL21(DE3)+MAGIC
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: LP_2664
    Organism Scientific: LACTOBACILLUS PLANTARUM WCFS1
    Organism Taxid: 220668
    Strain: WCFS1, NCIMB 8826

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x):  BC 
Biological Unit 2 (2x): A   
Biological Unit 3 (2x):    D

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 22)

Asymmetric Unit (1, 22)
No.NameCountTypeFull Name
1MSE22Mod. Amino AcidSELENOMETHIONINE
Biological Unit 1 (1, 12)
No.NameCountTypeFull Name
1MSE12Mod. Amino AcidSELENOMETHIONINE
Biological Unit 2 (1, 10)
No.NameCountTypeFull Name
1MSE10Mod. Amino AcidSELENOMETHIONINE
Biological Unit 3 (1, 10)
No.NameCountTypeFull Name
1MSE10Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (0, 0)

(no "Site" information available for 2PJQ)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2PJQ)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2PJQ)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2PJQ)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2PJQ)

(-) Exons   (0, 0)

(no "Exon" information available for 2PJQ)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:206
 aligned with F9URF4_LACPL | F9URF4 from UniProtKB/TrEMBL  Length:218

    Alignment length:215
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210     
         F9URF4_LACPL     1 MITETQLTAIQTYALQKLAHDHSGHGRDHLQRVNRLARRLAKDEGANLNLTLAAAWLHDVIDDKLMANPAKAHQDLIVQLNAQNVTADDQTAIFAIIDHMSFSKSFNGPQKLSLEGQVVQDADRLDAIGAIGIARALYYSGHVGEKIYDPAIAPREHMTREQYRHQPGTAINHFYEKLFKLAALMNTDTAKALAAHRTAVMHEFVDQFKAEWTAD 215
               SCOP domains d2pjqa1 A:1-215 Uncharacterized protein LP2664                                                                                                                                                                          SCOP domains
               CATH domains -2pjqA01 A:2-99 HD-domain/PDEase-like                                                              -------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh---------hhhhhhhhhhh...hhhhhhhhhhhhh...hhhhhhh.....hhhhhhhhhhhhh.hhhhhhhhhhhhhhhhh..............hhhhhhhh....hhhhhhh..hhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2pjq A   1 mITETQLTAIQTYALQKLAHDHSGHGRDHLQRVNRLARRLAKDEGANLNLTLAAAWLHDVID---------AHQDLIVQLNAQNVTADDQTAIFAIIDHmSFSKSFNGPQKLSLEGQVVQDADRLDAIGAIGIARALYYSGHVGEKIYDPAIAPREHmTREQYRHQPGTAINHFYEKLFKLAALmNTDTAKALAAHRTAVmHEFVDQFKAEWTAD 215
                            |       10        20        30        40        50        60 |       - |      80        90       100       110       120       130       140       150       160       170       180    |  190       200|      210     
                            |                                                           62        72                         100-MSE                                                   158-MSE                    185-MSE         201-MSE          
                            1-MSE                                                                                                                                                                                                                  


Chain B from PDB  Type:PROTEIN  Length:212
 aligned with F9URF4_LACPL | F9URF4 from UniProtKB/TrEMBL  Length:218

    Alignment length:215
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210     
         F9URF4_LACPL     1 MITETQLTAIQTYALQKLAHDHSGHGRDHLQRVNRLARRLAKDEGANLNLTLAAAWLHDVIDDKLMANPAKAHQDLIVQLNAQNVTADDQTAIFAIIDHMSFSKSFNGPQKLSLEGQVVQDADRLDAIGAIGIARALYYSGHVGEKIYDPAIAPREHMTREQYRHQPGTAINHFYEKLFKLAALMNTDTAKALAAHRTAVMHEFVDQFKAEWTAD 215
               SCOP domains d2pjqb_ B: Uncharacterized protein LP2664                                                                                                                                                                               SCOP domains
               CATH domains -2pjqB01 B:2-99 HD-domain/PDEase-like                                                              -------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhh...---...hhhhhhhhhhhhhhhh..hhhhhhhhhhhhh..hhhhhh......hhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhh..............hhhhhhhh..hhhhhhhhh..hhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2pjq B   1 mITETQLTAIQTYALQKLAHDHSGHGRDHLQRVNRLARRLAKDEGANLNLTLAAAWLHDVI---LmANPAKAHQDLIVQLNAQNVTADDQTAIFAIIDHmSFSKSFNGPQKLSLEGQVVQDADRLDAIGAIGIARALYYSGHVGEKIYDPAIAPREHmTREQYRHQPGTAINHFYEKLFKLAALmNTDTAKALAAHRTAVmHEFVDQFKAEWTAD 215
                            |       10        20        30        40        50        60|   ||  70        80        90       100       110       120       130       140       150       160       170       180    |  190       200|      210     
                            1-MSE                                                      61  65|                               100-MSE                                                   158-MSE                    185-MSE         201-MSE          
                                                                                            66-MSE                                                                                                                                                 


Chain C from PDB  Type:PROTEIN  Length:212
 aligned with F9URF4_LACPL | F9URF4 from UniProtKB/TrEMBL  Length:218

    Alignment length:215
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210     
         F9URF4_LACPL     1 MITETQLTAIQTYALQKLAHDHSGHGRDHLQRVNRLARRLAKDEGANLNLTLAAAWLHDVIDDKLMANPAKAHQDLIVQLNAQNVTADDQTAIFAIIDHMSFSKSFNGPQKLSLEGQVVQDADRLDAIGAIGIARALYYSGHVGEKIYDPAIAPREHMTREQYRHQPGTAINHFYEKLFKLAALMNTDTAKALAAHRTAVMHEFVDQFKAEWTAD 215
               SCOP domains d2pjqc_ C: Uncharacterized protein LP2664                                                                                                                                                                               SCOP domains
               CATH domains -2pjqC01 C:2-99 HD-domain/PDEase-like                                                              -------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhh....---..hhhhhhhhhhhhhhh...hhhhhhhhhhhhh..hhhhhh......hhhhhhhhhhhhhh.hhhhhhhhhhhhhhh................hhhhhhhh..hhhhhhhhh..hhhhh...hhhhhhhhh.hhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2pjq C   1 mITETQLTAIQTYALQKLAHDHSGHGRDHLQRVNRLARRLAKDEGANLNLTLAAAWLHDVID---mANPAKAHQDLIVQLNAQNVTADDQTAIFAIIDHmSFSKSFNGPQKLSLEGQVVQDADRLDAIGAIGIARALYYSGHVGEKIYDPAIAPREHmTREQYRHQPGTAINHFYEKLFKLAALmNTDTAKALAAHRTAVmHEFVDQFKAEWTAD 215
                            |       10        20        30        40        50        60 |   |  70        80        90       100       110       120       130       140       150       160       170       180    |  190       200|      210     
                            1-MSE                                                       62   |                               100-MSE                                                   158-MSE                    185-MSE         201-MSE          
                                                                                            66-MSE                                                                                                                                                 


Chain D from PDB  Type:PROTEIN  Length:203
 aligned with F9URF4_LACPL | F9URF4 from UniProtKB/TrEMBL  Length:218

    Alignment length:215
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210     
         F9URF4_LACPL     1 MITETQLTAIQTYALQKLAHDHSGHGRDHLQRVNRLARRLAKDEGANLNLTLAAAWLHDVIDDKLMANPAKAHQDLIVQLNAQNVTADDQTAIFAIIDHMSFSKSFNGPQKLSLEGQVVQDADRLDAIGAIGIARALYYSGHVGEKIYDPAIAPREHMTREQYRHQPGTAINHFYEKLFKLAALMNTDTAKALAAHRTAVMHEFVDQFKAEWTAD 215
               SCOP domains d2pjqd_ D: Uncharacterized protein LP2664                                                                                                                                                                               SCOP domains
               CATH domains -2pjqD01 D:2-99 HD-domain/PDEase-like                                                              -------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhh......hhhhhhhhhhhhhhh.---------hhhhhhhhhhh....---hhhhhhhhh..hhhhhhh.....hhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh.........................hhhhhhhhhhhhhhhhh.hhhhhhhhhh.hhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2pjq D   1 mITETQLTAIQTYALQKLAHDHSGHGRDHLQRVNRLARRLAKDEGANLNLTLAAAWLHDVID---------AHQDLIVQLNAQNVT---QTAIFAIIDHmSFSKSFNGPQKLSLEGQVVQDADRLDAIGAIGIARALYYSGHVGEKIYDPAIAPREHmTREQYRHQPGTAINHFYEKLFKLAALmNTDTAKALAAHRTAVmHEFVDQFKAEWTAD 215
                            |       10        20        30        40        50        60 |       - |      80     |  90       100       110       120       130       140       150       160       170       180    |  190       200|      210     
                            1-MSE                                                       62        72            86  90       100-MSE                                                   158-MSE                    185-MSE         201-MSE
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 4)

Asymmetric Unit
(-)
Class: All alpha proteins (14657)

(-) CATH Domains  (1, 4)

Asymmetric Unit
(-)
Class: Mainly Alpha (13335)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2PJQ)

(-) Gene Ontology  (1, 1)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D   (F9URF4_LACPL | F9URF4)
molecular function
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.

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