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(-) Description

Title :  CALICHEAMICIN GAMMA1I-DNA COMPLEX, NMR, 6 STRUCTURES
 
Authors :  R. A. Kumar, N. Ikemoto, D. J. Patel
Date :  31 Dec 96  (Deposition) - 15 May 97  (Release) - 24 Feb 09  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (6x)
Keywords :  Deoxyribonucleic Acid, Calicheamicin Gamma1I - Dna Complex, Enediyne Alignment In Minor Groove, Saccharide Dna Minor Groove Interactions, Intermolecular Drug Iodine-Guanine Amino Proton Interactions, Specificity And Cleavage Process (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  R. A. Kumar, N. Ikemoto, D. J. Patel
Solution Structure Of The Calicheamicin Gamma 1I-Dna Complex.
J. Mol. Biol. V. 265 187 1997
PubMed-ID: 9020982  |  Reference-DOI: 10.1006/JMBI.1996.0718
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - DNA(5'-D(C*AP*CP*TP*CP*CP*TP*GP*GP*TP*TP*TP*TP* TP*GP*TP*GP*AP*GP*GP*AP*CP*CP)-3')
    Chains: A
    Engineered: YES
    Synthetic: YES

 Structural Features

(-) Chains, Units

  
NMR Structure (6x): 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (6, 6)

NMR Structure (6, 6)
No.NameCountTypeFull Name
1DAG1Ligand/Ion4,6-DIDEOXY-4-AMINO-BETA-D-GLUCOPYRANOSIDE
2DSR1Ligand/Ion2,6-DIDEOXY-4-THIO-BETA-D-ALLOSEPYRANOSIDE
3EMP1Ligand/Ion2,4-DIDEOXY-4-(ETHYLAMINO)-3-O-METHYL ALPHA-L-THREO-PENTOPYRANOSIDE
4HIB1Ligand/Ion4-HYDROXY-5-IODO-2,3-DIMETHOXY-6-METHYLBENZOIC ACID
5MRP1Ligand/Ion3-O-METHYL-ALPHA-L-RHAMNOPYRANOSIDE
6MTC1Ligand/Ion[1,8-DIHYDROXY-11-OXO-13-(2-METHYLTRITHIO-ETHYLIDENE)-BICYCLO[7.3.1]TRIDECA-4,9-DIENE-2,6-DIYN-10-YL]-CARBAMIC ACID METHYL ESTER

(-) Sites  (6, 6)

NMR Structure (6, 6)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREDC A:5 , DSR A:32 , EMP A:35 , MTC A:36BINDING SITE FOR RESIDUE DAG A 31
2AC2SOFTWAREDC A:5 , DC A:6 , DT A:7 , DA A:20 , DG A:21 , DAG A:31 , HIB A:33BINDING SITE FOR RESIDUE DSR A 32
3AC3SOFTWAREDC A:6 , DT A:7 , DG A:8 , DA A:20 , DG A:21 , DSR A:32 , MRP A:34BINDING SITE FOR RESIDUE HIB A 33
4AC4SOFTWAREDG A:8 , DA A:20 , HIB A:33BINDING SITE FOR RESIDUE MRP A 34
5AC5SOFTWAREDC A:5 , DAG A:31 , MTC A:36BINDING SITE FOR RESIDUE EMP A 35
6AC6SOFTWAREDT A:4 , DC A:5 , DG A:23 , DAG A:31 , EMP A:35BINDING SITE FOR RESIDUE MTC A 36

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2PIK)

(-) Cis Peptide Bonds  (0, 0)

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 Sequence-Structure Mapping

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:DNA  Length:18
                                                 
                  2pik A  1 CACTCCTGGCCAGGAGTG 23
                                    15        
                                    9|        
                                    15
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

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(-) CATH Domains  (0, 0)

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(-) Gene Ontology  (0, 0)

NMR Structure(hide GO term definitions)
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