2PH5 - JenaLib

Title :   CRYSTAL STRUCTURE OF THE HOMOSPERMIDINE SYNTHASE HSS FROM LEGIONELLA PNEUMOPHILA IN COMPLEX WITH NAD, NORTHEAST STRUCTURAL GENOMICS TARGET LGR54

Authors :   F. Forouhar, M. Hussain, J. Seetharaman, Y. Fang, H. Janjua, R. Xiao, K. Cunningham, L-C. Ma, L. Owens, J. Liu, M. C. Baran, T. B. Acton, G. T. Montelione, J. F. Hunt, L. Tong, Northeast Structural Genomic Consortium (Nesg)

Date :   10 Apr 07 (Deposition) - 15 May 07 (Release) - 13 Jul 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.50

Chains :   Asym. Unit : A
Biol. Unit 1: A  (2x)

Keywords :   Alpha-Beta Protein, Structural Genomics, Psi-2, Protein Structure Initiative, Northeast Structural Genomics Consortium, Nesg, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   F. Forouhar, M. Hussain, J. Seetharaman, Y. Fang, H. Janjua, R. Xiao, K. Cunningham, L-C. Ma, L. Owens, J. Liu, M. C. Baran, T. B. Acton, G. T. Montelione, J. F. Hunt, L. Tong
Crystal Structure Of The Homospermidine Synthase Hss From Legionella Pneumophila In Complex With Nad.
To Be Published
PubMed: search

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (3, 7)

Sites (2, 2)

SS Bonds (0, 0)

Cis Peptide Bonds (2, 2)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:459
 aligned with Q5ZSM2_LEGPH | Q5ZSM2 from UniProtKB/TrEMBL  Length:472

    Alignment length:469
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            472  
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395       405       415       425       435       445       455       465      |  
         Q5ZSM2_LEGPH     6 NTKKILFKNRFVILGFGCVGQALMPLIFEKFDIKPSQVTIIAAEGTKVDVAQQYGVSFKLQQITPQNYLEVIGSTLEENDFLIDVSIGISSLALIILCNQKGALYINAATEPWKEEFVMEKMALNRRTNYSLREEVLRLKDKTQKTALITHGANPGLVSHFIKEALLNIAKDNGLTINRPKNAAEWANLAMTLGIKVIHVAEQDSQVTYPPKSPGEFVNTWSANGLILEGLQPAEIGWGTHEAHWPHDAYSHSNGPQCAIYLSRPSAGVMVRSWTPTLGAFHGFLITHAETISLTNFLTLKNGSELLYRPTVHYAYNPCPDARLSIFELKSNEWKPQNKNRLILNEIIDGCDELGVLLMGNQRGAYWYGSTLSIQEARQIAPYNNATSLQVVASMISGIIWAIEHPDEGIVEPEEVDHQYIIDIAKPYLGKVGGYYTDWTPLKNRGELYPEEVDLSDPWQFFNIRVN--   -
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 2ph5A01 A:6-156,A:401-421 NAD(P)-binding Rossmann-like Domain                                                                                          2ph5A02 A:157-399,A:422-474 homospermidine synthase like                                                                                                                                                                                           -2ph5A01              2ph5A02 A:157-399,A:422-474                           CATH domains
               Pfam domains ----------Saccharop_dh-2ph5A01 A:16-443                                                                                                                                                                                                                                                                                                                                                                                                               ------------------------------- Pfam domains
         Sec.struct. author ..........eeee..hhhhhhhhhhhhhhh..hhh.eeeee......hhhhhhh.eeee......hhhhhhhhhh....eeee.....hhhhhhhhhhhhh.eeee........----------..hhhhhhhhhhh........ee.......hhhhhhhhhhhhhhhhh.........hhhhhhhhhhhh...eeeeeeee..ee.......eeee..hhhhhhhhhhheeeee...........ee........eeeeeee....eeee.......eeee....hhhhhhhhhh.ee....eee..eeeeeee.hhhhhhhhhhhhhh......eeee....eee.eeeeeeeee.....eeeeeeeeehhhhhhhh...hhhhhhhhhhhhhhhhhhhh.....eehhhhhhhhhhhhhhhhhh..eeeeee......................hhhhhh.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2ph5 A   6 NTKKILFKNRFVILGFGCVGQALmPLIFEKFDIKPSQVTIIAAEGTKVDVAQQYGVSFKLQQITPQNYLEVIGSTLEENDFLIDVSIGISSLALIILCNQKGALYINAATEPWKE----------RRTNYSLREEVLRLKDKTQKTALITHGANPGLVSHFIKEALLNIAKDNGLTINRPKNAAEWANLAmTLGIKVIHVAEQDSQVTYPPKSPGEFVNTWSANGLILEGLQPAEIGWGTHEAHWPHDAYSHSNGPQCAIYLSRPSAGVmVRSWTPTLGAFHGFLITHAETISLTNFLTLKNGSELLYRPTVHYAYNPCPDARLSIFELKSNEWKPQNKNRLILNEIIDGCDELGVLLmGNQRGAYWYGSTLSIQEARQIAPYNNATSLQVVASmISGIIWAIEHPDEGIVEPEEVDHQYIIDIAKPYLGKVGGYYTDWTPLKNRGELYPEEVDLSDPWQFFNIRVNLE 474
                                    15        25   |    35        45        55        65        75        85        95       105       115    |    -     | 135       145       155       165       175       185       195|      205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395    |  405       415       425       435       445       455       465         
                                                  29-MSE                                                                                    120        131                                                              196-MSE                                                                        275-MSE                                                                                  364-MSE                             400-MSE

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
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	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (2, 2)

Pfam Domains (1, 1)

Gene Ontology (7, 7)

Asymmetric Unit(hide GO term definitions)

Chain A (Q5ZSM2_LEGPH | Q5ZSM2)

molecular function
	GO:0047296	homospermidine synthase activity	Catalysis of the reaction: 2 putrescine = NH3 + sym-homospermidine.
	GO:0000166	nucleotide binding	Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
	GO:0016491	oxidoreductase activity	Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
	GO:0016740	transferase activity	Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
biological process
	GO:0055114	oxidation-reduction process	A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
cellular component
	GO:0016021	integral component of membrane	The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
	GO:0016020	membrane	A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.

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