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(-) Description

Title :  CRYSTAL STRUCTURE OF A PUTATIVE MUCONATE CYCLOISOMERASE FROM SINORHIZOBIUM MELILOTI 1021
 
Authors :  D. Kumaran, S. K. Burley, S. Swaminathan, New York Sgx Research Cen Structural Genomics (Nysgxrc)
Date :  10 Apr 07  (Deposition) - 24 Apr 07  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.95
Chains :  Asym./Biol. Unit :  A,B,C,D,E,F,G,H
Keywords :  Enolase Superfamily, Muconate Cycloisomerase, Octamer, Small Molecule Metabolism, Psi-Ii, Nysgxrc, 9387A, Structural Genomics, Protein Structure Initiative, New York Sgx Research Center For Structural Genomics, Isomerase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  D. Kumaran, S. K. Burley, S. Swaminathan
Crystal Structure Of A Putative Muconate Cycloisomerase Fro Sinorhizobium Meliloti 1021
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - MUCONATE CYCLOISOMERASE
    Chains: A, B, C, D, E, F, G, H
    EC Number: 5.5.1.1
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PSGX3(BC)
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: RA0797, SMA1461
    Organism Scientific: SINORHIZOBIUM MELILOTI
    Organism Taxid: 266834
    Strain: 1021

 Structural Features

(-) Chains, Units

  12345678
Asymmetric/Biological Unit : ABCDEFGH

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 78)

Asymmetric/Biological Unit (2, 78)
No.NameCountTypeFull Name
1GOL6Ligand/IonGLYCEROL
2MSE72Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (6, 6)

Asymmetric Unit (6, 6)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETRP A:228 , HOH A:2109 , HOH A:2178 , TYR G:254 , ASP G:255BINDING SITE FOR RESIDUE GOL A 2100
2AC2SOFTWAREGLU B:174 , HIS B:204 , ASP B:205 , ASN B:208 , MSE B:209 , LYS B:212 , HOH B:2315 , HOH B:2334 , GLU C:219BINDING SITE FOR RESIDUE GOL B 2200
3AC3SOFTWARETRP C:228 , ILE C:230 , HOH C:2360 , HOH C:2432 , TYR H:254 , ASP H:255 , HOH H:426BINDING SITE FOR RESIDUE GOL C 2300
4AC4SOFTWAREGLU D:174 , ASP D:205 , ASN D:208 , MSE D:209 , LYS D:212 , HOH D:2521 , HOH D:2543BINDING SITE FOR RESIDUE GOL D 2400
5AC5SOFTWAREGLU E:174 , HIS E:204 , ASP E:205 , ASN E:208 , MSE E:209 , LYS E:212BINDING SITE FOR RESIDUE GOL E 2500
6AC6SOFTWAREHOH A:2237 , GLU F:174 , ASP F:205 , ASN F:208 , MSE F:209 , LYS F:212 , HOH F:2681BINDING SITE FOR RESIDUE GOL F 2600

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2PGW)

(-) Cis Peptide Bonds  (16, 16)

Asymmetric/Biological Unit
No.Residues
1Ala A:54 -Pro A:55
2Ser A:338 -Pro A:339
3Ala B:54 -Pro B:55
4Ser B:338 -Pro B:339
5Ala C:54 -Pro C:55
6Ser C:338 -Pro C:339
7Ala D:54 -Pro D:55
8Ser D:338 -Pro D:339
9Ala E:54 -Pro E:55
10Ser E:338 -Pro E:339
11Ala F:54 -Pro F:55
12Ser F:338 -Pro F:339
13Ala G:54 -Pro G:55
14Ser G:338 -Pro G:339
15Ala H:54 -Pro H:55
16Ser H:338 -Pro H:339

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2PGW)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2PGW)

(-) Exons   (0, 0)

(no "Exon" information available for 2PGW)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:371
 aligned with Q92YR6_RHIME | Q92YR6 from UniProtKB/TrEMBL  Length:374

    Alignment length:371
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371 
         Q92YR6_RHIME     2 VKISNVRVRPLVLPLKQPYHWSYGIRESFAVNLIEIEADDGTVGIGECTVAPDQTGTAAILYRLAKHLVGHSPHDVAPLIARIFHQEYLGHGANIMRAANQIFSGIDMAMWDLQGKLAGLPVHQLLGGAHRKAVGYFYFLQGETAEELARDAAVGHAQGERVFYLKVGRGEKLDLEITAAVRGEIGDARLRLDANEGWSVHDAINMCRKLEKYDIEFIEQPTVSWSIPAMAHVREKVGIPIVADQAAFTLYDVYEICRQRAADMICIGPREIGGIQPMMKAAAVAEAAGLKICIHSSFTTGITTCAEHHIGLAIPNLDDGNQIMWQLVQEDIVSSPDLTPKNGWLDAFRKPGLGFQLAEDLVAEGEGRYAA 372
               SCOP domains d2pgwa1 A:4-131 automated matches                                                                                               d2pgwa2 A:132-374 automated matches                                                                                                                                                                                                                 SCOP domains
               CATH domains 2pgwA01 A:4-130,A:352-374 Enolase-like, N-terminal domain                                                                      2pgwA02 A:131-351 Enolase superfamily                                                                                                                                                                                        2pgwA01                 CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeeeeeeeeeeeee....eeeeeeeeeeeeee....eeeeeee...hhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhh.hhhhh.......eee..ee....hhhhhhhhhhhhhhh...eeeee...hhhhhhhhhhhhhh.....eeeee.....hhhhhhhhhhhhhhhh..eee......hhhhhhhhhhhh...eee.....hhhhhhhhhhh....eeeehhhhhhhhhhhhhhhhhhhhh...eee.....hhhhhhhhhhhhhhh.........hhhhh....eee........eee.........eehhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2pgw A   4 VKISNVRVRPLVLPLKQPYHWSYGIRESFAVNLIEIEADDGTVGIGECTVAPDQTGTAAILYRLAKHLVGHSPHDVAPLIARIFHQEYLGHGANImRAANQIFSGIDmAmWDLQGKLAGLPVHQLLGGAHRKAVGYFYFLQGETAEELARDAAVGHAQGERVFYLKVGRGEKLDLEITAAVRGEIGDARLRLDANEGWSVHDAINmCRKLEKYDIEFIEQPTVSWSIPAmAHVREKVGIPIVADQAAFTLYDVYEICRQRAADmICIGPREIGGIQPmmKAAAVAEAAGLKICIHSSFTTGITTCAEHHIGLAIPNLDDGNQImWQLVQEDIVSSPDLTPKNGWLDAFRKPGLGFQLAEDLVAEGEGRYAA 374
                                    13        23        33        43        53        63        73        83        93     | 103       113       123       133       143       153       163       173       183       193       203     | 213       223       233       243       253       263   |   273       283       293       303       313       323   |   333       343       353       363       373 
                                                                                                                          99-MSE     111-MSE                                                                                           209-MSE                 233-MSE                           267-MSE       281-MSE                                       327-MSE                                           
                                                                                                                                       113-MSE                                                                                                                                                                  282-MSE                                                                                        


Chain B from PDB  Type:PROTEIN  Length:372
 aligned with Q92YR6_RHIME | Q92YR6 from UniProtKB/TrEMBL  Length:374

    Alignment length:372
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371  
         Q92YR6_RHIME     2 VKISNVRVRPLVLPLKQPYHWSYGIRESFAVNLIEIEADDGTVGIGECTVAPDQTGTAAILYRLAKHLVGHSPHDVAPLIARIFHQEYLGHGANIMRAANQIFSGIDMAMWDLQGKLAGLPVHQLLGGAHRKAVGYFYFLQGETAEELARDAAVGHAQGERVFYLKVGRGEKLDLEITAAVRGEIGDARLRLDANEGWSVHDAINMCRKLEKYDIEFIEQPTVSWSIPAMAHVREKVGIPIVADQAAFTLYDVYEICRQRAADMICIGPREIGGIQPMMKAAAVAEAAGLKICIHSSFTTGITTCAEHHIGLAIPNLDDGNQIMWQLVQEDIVSSPDLTPKNGWLDAFRKPGLGFQLAEDLVAEGEGRYAAS 373
               SCOP domains d2pgwb1 B:4-131 automated matches                                                                                               d2pgwb2 B:132-375 automated matches                                                                                                                                                                                                                  SCOP domains
               CATH domains 2pgwB01 B:4-130,B:352-375 Enolase-like, N-terminal domain                                                                      2pgwB02 B:131-351 Enolase superfamily                                                                                                                                                                                        2pgwB01                  CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeeeeeeeeeeeeeeeeee..eeeeeeeeeeeeeee....eeeeee....hhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhh.hhhhh.......eee..ee....hhhhhhhhhhhhhhh...eeeee...hhhhhhhhhhhhhh.....eeeee.....hhhhhhhhhhhhhhhh..eee......hhhhhhhhhhhh...eee.....hhhhhhhhhhh....eeeehhhhhhhhhhhhhhhhhhhhh...eee.....hhhhhhhhhhhhhhh.........hhhhh....eee........eee.........eehhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2pgw B   4 VKISNVRVRPLVLPLKQPYHWSYGIRESFAVNLIEIEADDGTVGIGECTVAPDQTGTAAILYRLAKHLVGHSPHDVAPLIARIFHQEYLGHGANImRAANQIFSGIDmAmWDLQGKLAGLPVHQLLGGAHRKAVGYFYFLQGETAEELARDAAVGHAQGERVFYLKVGRGEKLDLEITAAVRGEIGDARLRLDANEGWSVHDAINmCRKLEKYDIEFIEQPTVSWSIPAmAHVREKVGIPIVADQAAFTLYDVYEICRQRAADmICIGPREIGGIQPmmKAAAVAEAAGLKICIHSSFTTGITTCAEHHIGLAIPNLDDGNQImWQLVQEDIVSSPDLTPKNGWLDAFRKPGLGFQLAEDLVAEGEGRYAAS 375
                                    13        23        33        43        53        63        73        83        93     | 103       113       123       133       143       153       163       173       183       193       203     | 213       223       233       243       253       263   |   273       283       293       303       313       323   |   333       343       353       363       373  
                                                                                                                          99-MSE     111-MSE                                                                                           209-MSE                 233-MSE                           267-MSE       281-MSE                                       327-MSE                                            
                                                                                                                                       113-MSE                                                                                                                                                                  282-MSE                                                                                         


Chain C from PDB  Type:PROTEIN  Length:375
 aligned with Q92YR6_RHIME | Q92YR6 from UniProtKB/TrEMBL  Length:374

    Alignment length:375
                                                                                                                                                                                                                                                                                                                                                                                                              374  
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371  |  
         Q92YR6_RHIME     2 VKISNVRVRPLVLPLKQPYHWSYGIRESFAVNLIEIEADDGTVGIGECTVAPDQTGTAAILYRLAKHLVGHSPHDVAPLIARIFHQEYLGHGANIMRAANQIFSGIDMAMWDLQGKLAGLPVHQLLGGAHRKAVGYFYFLQGETAEELARDAAVGHAQGERVFYLKVGRGEKLDLEITAAVRGEIGDARLRLDANEGWSVHDAINMCRKLEKYDIEFIEQPTVSWSIPAMAHVREKVGIPIVADQAAFTLYDVYEICRQRAADMICIGPREIGGIQPMMKAAAVAEAAGLKICIHSSFTTGITTCAEHHIGLAIPNLDDGNQIMWQLVQEDIVSSPDLTPKNGWLDAFRKPGLGFQLAEDLVAEGEGRYAASR--   -
               SCOP domains d2pgwc1 C:4-131 automated matches                                                                                               d2pgwc2 C:132-378 automated matches                                                                                                                                                                                                                     SCOP domains
               CATH domains 2pgwC01 C:4-130,C:352-378 Enolase-like, N-terminal domain                                                                      2pgwC02 C:131-351 Enolase superfamily                                                                                                                                                                                        2pgwC01 C:4-130,C:352-378   CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeeeeeeeeeeeee....eeeeeeeeeeeeee....eeeeeee...hhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhh......eee..ee....hhhhhhhhhhhhhhh...eeeee...hhhhhhhhhhhhhh.....eeeee.....hhhhhhhhhhhhhhhh..eee......hhhhhhhhhhhh...eee.....hhhhhhhhhhh....eeeehhhhhhhhhhhhhhhhhhhhh...eee.....hhhhhhhhhhhhhhh.........hhhhh....eee........eee.........eehhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2pgw C   4 VKISNVRVRPLVLPLKQPYHWSYGIRESFAVNLIEIEADDGTVGIGECTVAPDQTGTAAILYRLAKHLVGHSPHDVAPLIARIFHQEYLGHGANImRAANQIFSGIDmAmWDLQGKLAGLPVHQLLGGAHRKAVGYFYFLQGETAEELARDAAVGHAQGERVFYLKVGRGEKLDLEITAAVRGEIGDARLRLDANEGWSVHDAINmCRKLEKYDIEFIEQPTVSWSIPAmAHVREKVGIPIVADQAAFTLYDVYEICRQRAADmICIGPREIGGIQPmmKAAAVAEAAGLKICIHSSFTTGITTCAEHHIGLAIPNLDDGNQImWQLVQEDIVSSPDLTPKNGWLDAFRKPGLGFQLAEDLVAEGEGRYAASREG 378
                                    13        23        33        43        53        63        73        83        93     | 103       113       123       133       143       153       163       173       183       193       203     | 213       223       233       243       253       263   |   273       283       293       303       313       323   |   333       343       353       363       373     
                                                                                                                          99-MSE     111-MSE                                                                                           209-MSE                 233-MSE                           267-MSE       281-MSE                                       327-MSE                                               
                                                                                                                                       113-MSE                                                                                                                                                                  282-MSE                                                                                            


Chain D from PDB  Type:PROTEIN  Length:372
 aligned with Q92YR6_RHIME | Q92YR6 from UniProtKB/TrEMBL  Length:374

    Alignment length:372
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371  
         Q92YR6_RHIME     2 VKISNVRVRPLVLPLKQPYHWSYGIRESFAVNLIEIEADDGTVGIGECTVAPDQTGTAAILYRLAKHLVGHSPHDVAPLIARIFHQEYLGHGANIMRAANQIFSGIDMAMWDLQGKLAGLPVHQLLGGAHRKAVGYFYFLQGETAEELARDAAVGHAQGERVFYLKVGRGEKLDLEITAAVRGEIGDARLRLDANEGWSVHDAINMCRKLEKYDIEFIEQPTVSWSIPAMAHVREKVGIPIVADQAAFTLYDVYEICRQRAADMICIGPREIGGIQPMMKAAAVAEAAGLKICIHSSFTTGITTCAEHHIGLAIPNLDDGNQIMWQLVQEDIVSSPDLTPKNGWLDAFRKPGLGFQLAEDLVAEGEGRYAAS 373
               SCOP domains d2pgwd1 D:4-131 automated matches                                                                                               d2pgwd2 D:132-375 automated matches                                                                                                                                                                                                                  SCOP domains
               CATH domains 2pgwD01 D:4-130,D:352-375 Enolase-like, N-terminal domain                                                                      2pgwD02 D:131-351 Enolase superfamily                                                                                                                                                                                        2pgwD01                  CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeeeeeeeeeeeeeeeeee..eeeeeeeeeeeeeee....eeeeeee...hhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhh......eee..ee....hhhhhhhhhhhhhhh...eeeee...hhhhhhhhhhhhhhhh...eeeee.....hhhhhhhhhhhhhhhh..eee......hhhhhhhhhhhh...eee.....hhhhhhhhhhh....eeeehhhhhhhhhhhhhhhhhhhhh...eee.....hhhhhhhhhhhhhhh.........hhhhh....eee........eee.........eehhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2pgw D   4 VKISNVRVRPLVLPLKQPYHWSYGIRESFAVNLIEIEADDGTVGIGECTVAPDQTGTAAILYRLAKHLVGHSPHDVAPLIARIFHQEYLGHGANImRAANQIFSGIDmAmWDLQGKLAGLPVHQLLGGAHRKAVGYFYFLQGETAEELARDAAVGHAQGERVFYLKVGRGEKLDLEITAAVRGEIGDARLRLDANEGWSVHDAINmCRKLEKYDIEFIEQPTVSWSIPAmAHVREKVGIPIVADQAAFTLYDVYEICRQRAADmICIGPREIGGIQPmmKAAAVAEAAGLKICIHSSFTTGITTCAEHHIGLAIPNLDDGNQImWQLVQEDIVSSPDLTPKNGWLDAFRKPGLGFQLAEDLVAEGEGRYAAS 375
                                    13        23        33        43        53        63        73        83        93     | 103       113       123       133       143       153       163       173       183       193       203     | 213       223       233       243       253       263   |   273       283       293       303       313       323   |   333       343       353       363       373  
                                                                                                                          99-MSE     111-MSE                                                                                           209-MSE                 233-MSE                           267-MSE       281-MSE                                       327-MSE                                            
                                                                                                                                       113-MSE                                                                                                                                                                  282-MSE                                                                                         


Chain E from PDB  Type:PROTEIN  Length:372
 aligned with Q92YR6_RHIME | Q92YR6 from UniProtKB/TrEMBL  Length:374

    Alignment length:372
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371  
         Q92YR6_RHIME     2 VKISNVRVRPLVLPLKQPYHWSYGIRESFAVNLIEIEADDGTVGIGECTVAPDQTGTAAILYRLAKHLVGHSPHDVAPLIARIFHQEYLGHGANIMRAANQIFSGIDMAMWDLQGKLAGLPVHQLLGGAHRKAVGYFYFLQGETAEELARDAAVGHAQGERVFYLKVGRGEKLDLEITAAVRGEIGDARLRLDANEGWSVHDAINMCRKLEKYDIEFIEQPTVSWSIPAMAHVREKVGIPIVADQAAFTLYDVYEICRQRAADMICIGPREIGGIQPMMKAAAVAEAAGLKICIHSSFTTGITTCAEHHIGLAIPNLDDGNQIMWQLVQEDIVSSPDLTPKNGWLDAFRKPGLGFQLAEDLVAEGEGRYAAS 373
               SCOP domains d2pgwe1 E:4-131 automated matches                                                                                               d2pgwe2 E:132-375 automated matches                                                                                                                                                                                                                  SCOP domains
               CATH domains 2pgwE01 E:4-130,E:352-375 Enolase-like, N-terminal domain                                                                      2pgwE02 E:131-351 Enolase superfamily                                                                                                                                                                                        2pgwE01                  CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....eeeeeeeeeeeeeeeee..eeeeeeeeeeeeee.....eeeeeee...hhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhh......eee..ee....hhhhhhhhhhhhhhhh..eeeee...hhhhhhhhhhhhhh.....eeeee.....hhhhhhhhhhhhhhhh..eee......hhhhhhhhhhhh...eee.....hhhhhhhhhhhh...eeeehhhhhhhhhhhhhhhhhhhhh...eee.....hhhhhhhhhhhhhhh.........hhhhh....eee........eee.........eehhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2pgw E   4 VKISNVRVRPLVLPLKQPYHWSYGIRESFAVNLIEIEADDGTVGIGECTVAPDQTGTAAILYRLAKHLVGHSPHDVAPLIARIFHQEYLGHGANImRAANQIFSGIDmAmWDLQGKLAGLPVHQLLGGAHRKAVGYFYFLQGETAEELARDAAVGHAQGERVFYLKVGRGEKLDLEITAAVRGEIGDARLRLDANEGWSVHDAINmCRKLEKYDIEFIEQPTVSWSIPAmAHVREKVGIPIVADQAAFTLYDVYEICRQRAADmICIGPREIGGIQPmmKAAAVAEAAGLKICIHSSFTTGITTCAEHHIGLAIPNLDDGNQImWQLVQEDIVSSPDLTPKNGWLDAFRKPGLGFQLAEDLVAEGEGRYAAS 375
                                    13        23        33        43        53        63        73        83        93     | 103       113       123       133       143       153       163       173       183       193       203     | 213       223       233       243       253       263   |   273       283       293       303       313       323   |   333       343       353       363       373  
                                                                                                                          99-MSE     111-MSE                                                                                           209-MSE                 233-MSE                           267-MSE       281-MSE                                       327-MSE                                            
                                                                                                                                       113-MSE                                                                                                                                                                  282-MSE                                                                                         


Chain F from PDB  Type:PROTEIN  Length:372
 aligned with Q92YR6_RHIME | Q92YR6 from UniProtKB/TrEMBL  Length:374

    Alignment length:372
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371  
         Q92YR6_RHIME     2 VKISNVRVRPLVLPLKQPYHWSYGIRESFAVNLIEIEADDGTVGIGECTVAPDQTGTAAILYRLAKHLVGHSPHDVAPLIARIFHQEYLGHGANIMRAANQIFSGIDMAMWDLQGKLAGLPVHQLLGGAHRKAVGYFYFLQGETAEELARDAAVGHAQGERVFYLKVGRGEKLDLEITAAVRGEIGDARLRLDANEGWSVHDAINMCRKLEKYDIEFIEQPTVSWSIPAMAHVREKVGIPIVADQAAFTLYDVYEICRQRAADMICIGPREIGGIQPMMKAAAVAEAAGLKICIHSSFTTGITTCAEHHIGLAIPNLDDGNQIMWQLVQEDIVSSPDLTPKNGWLDAFRKPGLGFQLAEDLVAEGEGRYAAS 373
               SCOP domains d2pgwf1 F:4-131 automated matches                                                                                               d2pgwf2 F:132-375 automated matches                                                                                                                                                                                                                  SCOP domains
               CATH domains 2pgwF01 F:4-130,F:352-375 Enolase-like, N-terminal domain                                                                      2pgwF02 F:131-351 Enolase superfamily                                                                                                                                                                                        2pgwF01                  CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeeeeeeeeeeeeeeeeee..eeeeeeeeeeeeeee....eeeeeee...hhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhh.hhhhh.......eee..ee....hhhhhhhhhhhhhhh...eeeee...hhhhhhhhhhhhhh.....eeeee.....hhhhhhhhhhhhhhhh..eee......hhhhhhhhhhhh...eee.....hhhhhhhhhhh....eeeehhhhhhhhhhhhhhhhhhhhh...eee.....hhhhhhhhhhhhhhh.........hhhhh....eee........eee.........eehhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2pgw F   4 VKISNVRVRPLVLPLKQPYHWSYGIRESFAVNLIEIEADDGTVGIGECTVAPDQTGTAAILYRLAKHLVGHSPHDVAPLIARIFHQEYLGHGANImRAANQIFSGIDmAmWDLQGKLAGLPVHQLLGGAHRKAVGYFYFLQGETAEELARDAAVGHAQGERVFYLKVGRGEKLDLEITAAVRGEIGDARLRLDANEGWSVHDAINmCRKLEKYDIEFIEQPTVSWSIPAmAHVREKVGIPIVADQAAFTLYDVYEICRQRAADmICIGPREIGGIQPmmKAAAVAEAAGLKICIHSSFTTGITTCAEHHIGLAIPNLDDGNQImWQLVQEDIVSSPDLTPKNGWLDAFRKPGLGFQLAEDLVAEGEGRYAAS 375
                                    13        23        33        43        53        63        73        83        93     | 103       113       123       133       143       153       163       173       183       193       203     | 213       223       233       243       253       263   |   273       283       293       303       313       323   |   333       343       353       363       373  
                                                                                                                          99-MSE     111-MSE                                                                                           209-MSE                 233-MSE                           267-MSE       281-MSE                                       327-MSE                                            
                                                                                                                                       113-MSE                                                                                                                                                                  282-MSE                                                                                         


Chain G from PDB  Type:PROTEIN  Length:372
 aligned with Q92YR6_RHIME | Q92YR6 from UniProtKB/TrEMBL  Length:374

    Alignment length:372
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371  
         Q92YR6_RHIME     2 VKISNVRVRPLVLPLKQPYHWSYGIRESFAVNLIEIEADDGTVGIGECTVAPDQTGTAAILYRLAKHLVGHSPHDVAPLIARIFHQEYLGHGANIMRAANQIFSGIDMAMWDLQGKLAGLPVHQLLGGAHRKAVGYFYFLQGETAEELARDAAVGHAQGERVFYLKVGRGEKLDLEITAAVRGEIGDARLRLDANEGWSVHDAINMCRKLEKYDIEFIEQPTVSWSIPAMAHVREKVGIPIVADQAAFTLYDVYEICRQRAADMICIGPREIGGIQPMMKAAAVAEAAGLKICIHSSFTTGITTCAEHHIGLAIPNLDDGNQIMWQLVQEDIVSSPDLTPKNGWLDAFRKPGLGFQLAEDLVAEGEGRYAAS 373
               SCOP domains d2pgwg1 G:4-131 automated matches                                                                                               d2pgwg2 G:132-375 automated matches                                                                                                                                                                                                                  SCOP domains
               CATH domains 2pgwG01 G:4-130,G:352-375 Enolase-like, N-terminal domain                                                                      2pgwG02 G:131-351 Enolase superfamily                                                                                                                                                                                        2pgwG01                  CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeeeeeeeeeeeeeeeeee..eeeeeeeeeeeeeee....eeeeeee...hhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhh.hhhhh.......eee..ee....hhhhhhhhhhhhhhh...eeeee...hhhhhhhhhhhhhh.....eeeee.....hhhhhhhhhhhhhhhh..eee......hhhhhhhhhhhh...eee.....hhhhhhhhhhh....eeeehhhhhhhhhhhhhhhhhhhhh...eee.....hhhhhhhhhhhhhhh.........hhhhh....eee........eee.........eehhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2pgw G   4 VKISNVRVRPLVLPLKQPYHWSYGIRESFAVNLIEIEADDGTVGIGECTVAPDQTGTAAILYRLAKHLVGHSPHDVAPLIARIFHQEYLGHGANImRAANQIFSGIDmAmWDLQGKLAGLPVHQLLGGAHRKAVGYFYFLQGETAEELARDAAVGHAQGERVFYLKVGRGEKLDLEITAAVRGEIGDARLRLDANEGWSVHDAINmCRKLEKYDIEFIEQPTVSWSIPAmAHVREKVGIPIVADQAAFTLYDVYEICRQRAADmICIGPREIGGIQPmmKAAAVAEAAGLKICIHSSFTTGITTCAEHHIGLAIPNLDDGNQImWQLVQEDIVSSPDLTPKNGWLDAFRKPGLGFQLAEDLVAEGEGRYAAS 375
                                    13        23        33        43        53        63        73        83        93     | 103       113       123       133       143       153       163       173       183       193       203     | 213       223       233       243       253       263   |   273       283       293       303       313       323   |   333       343       353       363       373  
                                                                                                                          99-MSE     111-MSE                                                                                           209-MSE                 233-MSE                           267-MSE       281-MSE                                       327-MSE                                            
                                                                                                                                       113-MSE                                                                                                                                                                  282-MSE                                                                                         


Chain H from PDB  Type:PROTEIN  Length:372
 aligned with Q92YR6_RHIME | Q92YR6 from UniProtKB/TrEMBL  Length:374

    Alignment length:372
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371  
         Q92YR6_RHIME     2 VKISNVRVRPLVLPLKQPYHWSYGIRESFAVNLIEIEADDGTVGIGECTVAPDQTGTAAILYRLAKHLVGHSPHDVAPLIARIFHQEYLGHGANIMRAANQIFSGIDMAMWDLQGKLAGLPVHQLLGGAHRKAVGYFYFLQGETAEELARDAAVGHAQGERVFYLKVGRGEKLDLEITAAVRGEIGDARLRLDANEGWSVHDAINMCRKLEKYDIEFIEQPTVSWSIPAMAHVREKVGIPIVADQAAFTLYDVYEICRQRAADMICIGPREIGGIQPMMKAAAVAEAAGLKICIHSSFTTGITTCAEHHIGLAIPNLDDGNQIMWQLVQEDIVSSPDLTPKNGWLDAFRKPGLGFQLAEDLVAEGEGRYAAS 373
               SCOP domains d2pgwh1 H:4-131 automated matches                                                                                               d2pgwh2 H:132-375 automated matches                                                                                                                                                                                                                  SCOP domains
               CATH domains 2pgwH01 H:4-130,H:352-375 Enolase-like, N-terminal domain                                                                      2pgwH02 H:131-351 Enolase superfamily                                                                                                                                                                                        2pgwH01                  CATH domains
           Pfam domains (1) --MR_MLE_N-2pgwH01 H:6-130                                                                                                     -------------------------------------------------MR_MLE-2pgwH09 H:180-247                                            -------------------------------------------------------------------------------------------------------------------------------- Pfam domains (1)
           Pfam domains (2) --MR_MLE_N-2pgwH02 H:6-130                                                                                                     -------------------------------------------------MR_MLE-2pgwH10 H:180-247                                            -------------------------------------------------------------------------------------------------------------------------------- Pfam domains (2)
           Pfam domains (3) --MR_MLE_N-2pgwH03 H:6-130                                                                                                     -------------------------------------------------MR_MLE-2pgwH11 H:180-247                                            -------------------------------------------------------------------------------------------------------------------------------- Pfam domains (3)
           Pfam domains (4) --MR_MLE_N-2pgwH04 H:6-130                                                                                                     -------------------------------------------------MR_MLE-2pgwH12 H:180-247                                            -------------------------------------------------------------------------------------------------------------------------------- Pfam domains (4)
           Pfam domains (5) --MR_MLE_N-2pgwH05 H:6-130                                                                                                     -------------------------------------------------MR_MLE-2pgwH13 H:180-247                                            -------------------------------------------------------------------------------------------------------------------------------- Pfam domains (5)
           Pfam domains (6) --MR_MLE_N-2pgwH06 H:6-130                                                                                                     -------------------------------------------------MR_MLE-2pgwH14 H:180-247                                            -------------------------------------------------------------------------------------------------------------------------------- Pfam domains (6)
           Pfam domains (7) --MR_MLE_N-2pgwH07 H:6-130                                                                                                     -------------------------------------------------MR_MLE-2pgwH15 H:180-247                                            -------------------------------------------------------------------------------------------------------------------------------- Pfam domains (7)
           Pfam domains (8) --MR_MLE_N-2pgwH08 H:6-130                                                                                                     -------------------------------------------------MR_MLE-2pgwH16 H:180-247                                            -------------------------------------------------------------------------------------------------------------------------------- Pfam domains (8)
           Pfam domains (9) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MR_MLE_C-2pgwH17 H:247-359                                                                                       ---------------- Pfam domains (9)
          Pfam domains (10) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MR_MLE_C-2pgwH18 H:247-359                                                                                       ---------------- Pfam domains (10)
          Pfam domains (11) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MR_MLE_C-2pgwH19 H:247-359                                                                                       ---------------- Pfam domains (11)
          Pfam domains (12) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MR_MLE_C-2pgwH20 H:247-359                                                                                       ---------------- Pfam domains (12)
          Pfam domains (13) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MR_MLE_C-2pgwH21 H:247-359                                                                                       ---------------- Pfam domains (13)
          Pfam domains (14) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MR_MLE_C-2pgwH22 H:247-359                                                                                       ---------------- Pfam domains (14)
          Pfam domains (15) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MR_MLE_C-2pgwH23 H:247-359                                                                                       ---------------- Pfam domains (15)
          Pfam domains (16) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MR_MLE_C-2pgwH24 H:247-359                                                                                       ---------------- Pfam domains (16)
         Sec.struct. author ..eeeeeeeeeeeeeeeeeee..eeeeeeeeeeeeeee....eeeeeee...hhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhh.hhhhh.......eee..ee....hhhhhhhhhhhhhhh...eeeee...hhhhhhhhhhhhhhhh...eeeee.....hhhhhhhhhhhhh...eeeee......hhhhhhhhhhhh...eee.....hhhhhhhhhhh....eeeehhhhhhhhhhhhhhhhhhhhh...eee.....hhhhhhhhhhhhhhh.........hhhhh....eee........eee.........eehhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2pgw H   4 VKISNVRVRPLVLPLKQPYHWSYGIRESFAVNLIEIEADDGTVGIGECTVAPDQTGTAAILYRLAKHLVGHSPHDVAPLIARIFHQEYLGHGANImRAANQIFSGIDmAmWDLQGKLAGLPVHQLLGGAHRKAVGYFYFLQGETAEELARDAAVGHAQGERVFYLKVGRGEKLDLEITAAVRGEIGDARLRLDANEGWSVHDAINmCRKLEKYDIEFIEQPTVSWSIPAmAHVREKVGIPIVADQAAFTLYDVYEICRQRAADmICIGPREIGGIQPmmKAAAVAEAAGLKICIHSSFTTGITTCAEHHIGLAIPNLDDGNQImWQLVQEDIVSSPDLTPKNGWLDAFRKPGLGFQLAEDLVAEGEGRYAAS 375
                                    13        23        33        43        53        63        73        83        93     | 103       113       123       133       143       153       163       173       183       193       203     | 213       223       233       243       253       263   |   273       283       293       303       313       323   |   333       343       353       363       373  
                                                                                                                          99-MSE     111-MSE                                                                                           209-MSE                 233-MSE                           267-MSE       281-MSE                                       327-MSE                                            
                                                                                                                                       113-MSE                                                                                                                                                                  282-MSE
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 16)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (2, 16)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)
(-)
Architecture: 2-Layer Sandwich (8480)
(-)
Topology: Enolase-like; domain 1 (252)
(-)
Homologous Superfamily: Enolase-like, N-terminal domain (130)
(-)
Sinorhizobium meliloti 1021. Organism_taxid: 266834. Strain: 1021. (2)
1a2pgwA01A:4-130,A:352-374
1b2pgwB01B:4-130,B:352-375
1c2pgwD01D:4-130,D:352-375
1d2pgwE01E:4-130,E:352-375
1e2pgwF01F:4-130,F:352-375
1f2pgwG01G:4-130,G:352-375
1g2pgwH01H:4-130,H:352-375
1h2pgwC01C:4-130,C:352-378
(-)
Architecture: Alpha-Beta Barrel (2994)

(-) Pfam Domains  (3, 24)

Asymmetric/Biological Unit
(-)
Clan: Enolase_N (69)
(-)
Clan: Enolase_TIM (82)

(-) Gene Ontology  (5, 5)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B,C,D,E,F,G,H   (Q92YR6_RHIME | Q92YR6)
molecular function
    GO:0003824    catalytic activity    Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
    GO:0016853    isomerase activity    Catalysis of the geometric or structural changes within one molecule. Isomerase is the systematic name for any enzyme of EC class 5.
    GO:0018849    muconate cycloisomerase activity    Catalysis of the reaction: 2,5-dihydro-5-oxofuran-2-acetate = cis,cis-hexadienedioate.
biological process
    GO:0009063    cellular amino acid catabolic process    The chemical reactions and pathways resulting in the breakdown of amino acids, organic acids containing one or more amino substituents.
    GO:0008152    metabolic process    The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.

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