2PE8 - JenaLib

Title :   CRYSTAL STRUCTURE OF THE UHM DOMAIN OF HUMAN SPF45 (FREE FORM)

Authors :   L. Corsini, J. Basquin, M. Hothorn, M. Sattler

Date :   02 Apr 07 (Deposition) - 26 Jun 07 (Release) - 13 Jul 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.00

Chains :   Asym./Biol. Unit : A

Keywords :   Rrm, Protein Binding (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   L. Corsini, S. Bonna, J. Basquin, M. Hothorn, K. Scheffzek, J. Valcarcel, M. Sattler
U2Af-Homology Motif Interactions Are Required For Alternative Splicing Regulation By Spf45.
Nat. Struct. Mol. Biol. V. 14 620 2007
PubMed-ID: 17589525 | Reference-DOI: 10.1038/NSMB1260

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (0, 0)

Sites (0, 0)

SS Bonds (0, 0)

Cis Peptide Bonds (2, 2)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (1, 1)

Exons (6, 6)

Asymmetric/Biological Unit (6, 6)

	ENSEMBL					UniProtKB			PDB
No.	Transcript ID	Exon	Exon ID	Genome Location	Length	ID	Location	Length	Count	Location	Length
1.1b	ENST00000379888	1b	ENSE00001907046	chr10:6130950-6131156	207	SPF45_HUMAN	-	0	0	-	-
1.3b	ENST00000379888	3b	ENSE00001483069	chr10:6139011-6139151	141	SPF45_HUMAN	1-41	41	0	-	-
1.4	ENST00000379888	4	ENSE00000915068	chr10:6143234-6143350	117	SPF45_HUMAN	42-80	39	0	-	-
1.5a	ENST00000379888	5a	ENSE00000915069	chr10:6146894-6147060	167	SPF45_HUMAN	81-136	56	0	-	-
1.6a	ENST00000379888	6a	ENSE00000915070	chr10:6148104-6148201	98	SPF45_HUMAN	136-169	34	0	-	-
1.7b	ENST00000379888	7b	ENSE00000915071	chr10:6150649-6150705	57	SPF45_HUMAN	169-188	20	0	-	-
1.8c	ENST00000379888	8c	ENSE00002152786	chr10:6151949-6152090	142	SPF45_HUMAN	188-235	48	1	A:298-300	3
1.9b	ENST00000379888	9b	ENSE00002176546	chr10:6154173-6154324	152	SPF45_HUMAN	235-286	52	1	A:300-300	1
1.11b	ENST00000379888	11b	ENSE00001592417	chr10:6155471-6155544	74	SPF45_HUMAN	286-310	25	1	A:301-310	10
1.12b	ENST00000379888	12b	ENSE00001755881	chr10:6156012-6156110	99	SPF45_HUMAN	311-343	33	1	A:311-343 (gaps)	33
1.12d	ENST00000379888	12d	ENSE00001786536	chr10:6157202-6157274	73	SPF45_HUMAN	344-368	25	1	A:344-368	25
1.12h	ENST00000379888	12h	ENSE00001910979	chr10:6157416-6158843	1428	SPF45_HUMAN	368-401	34	1	A:368-401	34

Sequences/Alignments

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:101
 aligned with SPF45_HUMAN | Q96I25 from UniProtKB/Swiss-Prot  Length:401

    Alignment length:169
                                   242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392         
          SPF45_HUMAN   233 NMGGTVAHKIMQKYGFREGQGLGKHEQGLSTALSVEKTSKRGGKIIVGDATEKDASKKSDSNPLTEILKCPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRVVKACFYNLDKFRVLDLAEQV 401
               SCOP domains d2p                                                                 e8a_ A: automated    matches                                                                          SCOP domains
               CATH domains ---                                                                 ---2pe8A01 A:304-3   88  [code=3.30.70.330, no name defined]                            ------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------RRM_5-2pe8A01 A:327-387                                      -------------- Pfam domains
         Sec.struct. author hhh-----------------------------------------------------------------hh...eeeee........---hhhhhhhhhhhhh.eeeeeeee.........eeeeeee.hhhhhhhhhhhhh..ee..ee.eeee.hhhhhhh....... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --G_PATCH  PDB: A:300-300 UniProt: 235-275 ------------------------------------------------------------------------------------------------------------------------------ PROSITE
           Transcript 1 (1) 1.8--------------------------------------------------Exon 1.11b  PDB: A:301-31Exon 1.12b  PDB: A:311-343 (gaps)Exon 1.12d  PDB: A:344-36--------------------------------- Transcript 1 (1)
           Transcript 1 (2) --Exon 1.9b  PDB: A:300-300 UniProt: 235-286          ---------------------------------------------------------------------------------Exon 1.12h  PDB: A:368-401         Transcript 1 (2)
                 2pe8 A 298 AMG-----------------------------------------------------------------KCPTKVVLLRNMVGAGEV---LEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRVVKACFYNLDKFRVLDLAEQV 401
                              |      -         -         -         -         -         -       302       312     | 322       332       342       352       362       372       382       392         
                              |                                                               301              318 322                                                                               
                            300

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (1, 1)

CATH Domains (1, 1)

Pfam Domains (1, 1)

Gene Ontology (9, 9)

Asymmetric/Biological Unit(hide GO term definitions)

Chain A (SPF45_HUMAN | Q96I25)

molecular function
	GO:0003723	RNA binding	Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
	GO:0003676	nucleic acid binding	Interacting selectively and non-covalently with any nucleic acid.
	GO:0000166	nucleotide binding	Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
	GO:0005515	protein binding	Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
biological process
	GO:0008380	RNA splicing	The process of removing sections of the primary RNA transcript to remove sequences not present in the mature form of the RNA and joining the remaining sections to form the mature form of the RNA.
	GO:0000380	alternative mRNA splicing, via spliceosome	The process of generating multiple mRNA molecules from a given set of exons by differential use of exons from the primary transcript(s) to form multiple mature mRNAs that vary in their exon composition.
	GO:0006397	mRNA processing	Any process involved in the conversion of a primary mRNA transcript into one or more mature mRNA(s) prior to translation into polypeptide.
cellular component
	GO:0005634	nucleus	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
	GO:0005681	spliceosomal complex	Any of a series of ribonucleoprotein complexes that contain snRNA(s) and small nuclear ribonucleoproteins (snRNPs), and are formed sequentially during the spliceosomal splicing of one or more substrate RNAs, and which also contain the RNA substrate(s) from the initial target RNAs of splicing, the splicing intermediate RNA(s), to the final RNA products. During cis-splicing, the initial target RNA is a single, contiguous RNA transcript, whether mRNA, snoRNA, etc., and the released products are a spliced RNA and an excised intron, generally as a lariat structure. During trans-splicing, there are two initial substrate RNAs, the spliced leader RNA and a pre-mRNA.

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	Sites
(no "Sites" information available for 2pe8)

	Cis Peptide Bonds
		Ala A:315 - Gly A:316	[ RasMol ]
		Gly A:346 - Ala A:347	[ RasMol ]

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