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(-) Description

Title :  CRYSTAL STRUCTURE OF CONSERVED HYPOTHETICAL PROTEIN MJ0922 FROM METHANOCALDOCOCCUS JANNASCHII DSM 2661
 
Authors :  M. Zhao, A. Ebihara, A. Shinkai, S. Kuramitsu, S. Yokoyama, J. Zhu, J. T. Ii, L. Chen, Z-Q. Fu, J. Charz, J. P. Rose, B-C. Wang, Southeast Collab For Structural Genomics (Secsg), Riken Structural Genomics/P Initiative (Rsgi)
Date :  26 Mar 07  (Deposition) - 03 Jul 07  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.59
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Keywords :  Mj0922, Methanocaldococcus Jannaschii, Structural Genomics, Southeast Collaboratory For Structural Genomics, Secsg, Protein Structure Initiative, Riken Structural Genomics/Proteomics Initiative, Rsgi, Psi, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. Zhao, A. Ebihara, A. Shinkai, S. Kuramitsu, S. Yokoyama, J. Zhu, J. T. Swindell Ii, L. Chen, Z-Q. Fu, J. Charz, J. P. Rose, B-C. Wang
Crystal Structure Of Conserved Hypothetical Protein Mj0922 From Methanocaldococcus Jannaschii Dsm 2661
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - HYPOTHETICAL PROTEIN MJ0922
    Atcc: 43067
    Chains: A, B, C, D
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET-21A
    Expression System Strain: BL21-CODONPLUS(DE3)-RIL-X
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: MJ0922
    Organism Scientific: METHANOCALDOCOCCUS JANNASCHII DSM 2661
    Organism Taxid: 243232
    Strain: DSM 2661, JAL-1, JCM 10045, NBRC 100440

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): AB  
Biological Unit 2 (1x):   CD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 16)

Asymmetric Unit (1, 16)
No.NameCountTypeFull Name
1MSE16Mod. Amino AcidSELENOMETHIONINE
Biological Unit 1 (1, 8)
No.NameCountTypeFull Name
1MSE8Mod. Amino AcidSELENOMETHIONINE
Biological Unit 2 (1, 8)
No.NameCountTypeFull Name
1MSE8Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (0, 0)

(no "Site" information available for 2P9M)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2P9M)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2P9M)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2P9M)

(-) PROSITE Motifs  (1, 8)

Asymmetric Unit (1, 8)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1CBSPS51371 CBS domain profile.Y922_METJA14-70
 
 
 
79-138
 
 
 		  8A:14-70
B:14-70
C:14-70
D:14-70
A:79-137
B:79-137
C:79-137
D:79-137
Biological Unit 1 (1, 4)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1CBSPS51371 CBS domain profile.Y922_METJA14-70
 
 
 
79-138
 
 
 		  4A:14-70
B:14-70
-
-
A:79-137
B:79-137
-
-
Biological Unit 2 (1, 4)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1CBSPS51371 CBS domain profile.Y922_METJA14-70
 
 
 
79-138
 
 
 		  4-
-
C:14-70
D:14-70
-
-
C:79-137
D:79-137

(-) Exons   (0, 0)

(no "Exon" information available for 2P9M)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:128
 aligned with Y922_METJA | Q58332 from UniProtKB/Swiss-Prot  Length:138

    Alignment length:133
                                    14        24        34        44        54        64        74        84        94       104       114       124       134   
           Y922_METJA     5 LKNIKVKDVMTKNVITAKRHEGVVEAFEKMLKYKISSLPVIDDENKVIGIVTTTDIGYNLIRDKYTLETTIGDVMTKDVITIHEDASILEAIKKMDISGKKEEIINQLPVVDKNNKLVGIISDGDIIRTISKI 137
               SCOP domains d2p9ma_ A: automated matches                                                                                                          SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhh.......ee...hhhhhhhhhhhhh..eeeee.....eeeeeehhhhhhhhh........hhhhhh......ee...hhhhhhhhhh..-----...eeeee.....eeeeeehhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------CBS  PDB: A:14-70 UniProt: 14-70                         --------CBS  PDB: A:79-137 UniProt: 79-138                          PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2p9m A   5 LKNIKVKDVmTKNVITAKRHEGVVEAFEKmLKYKISSLPVIDDENKVIGIVTTTDIGYNLIRDKYTLETTIGDVmTKDVITIHEDASILEAIKKmDIS-----IINQLPVVDKNNKLVGIISDGDIIRTISKI 137
                                    14        24        34        44        54        64        74    |   84        94    |  | -   |   114       124       134   
                                    14-MSE              34-MSE                                       79-MSE              99-MSE  108                             
                                                                                                                           102                                   


Chain B from PDB  Type:PROTEIN  Length:129
 aligned with Y922_METJA | Q58332 from UniProtKB/Swiss-Prot  Length:138

    Alignment length:135
                                    12        22        32        42        52        62        72        82        92       102       112       122       132     
           Y922_METJA     3 DTLKNIKVKDVMTKNVITAKRHEGVVEAFEKMLKYKISSLPVIDDENKVIGIVTTTDIGYNLIRDKYTLETTIGDVMTKDVITIHEDASILEAIKKMDISGKKEEIINQLPVVDKNNKLVGIISDGDIIRTISKI 137
               SCOP domains d2p9mb_ B: automated matches                                                                                                            SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......hhhhhh......ee...hhhhhhhhhhhh...eeeee.....eeeeeehhhhhhhhhh.......hhhhhh......ee...hhhhhhhhhhh------...eeeee.....eeeeeehhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----------CBS  PDB: B:14-70 UniProt: 14-70                         --------CBS  PDB: B:79-137 UniProt: 79-138                          PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2p9m B   3 DTLKNIKVKDVmTKNVITAKRHEGVVEAFEKmLKYKISSLPVIDDENKVIGIVTTTDIGYNLIRDKYTLETTIGDVmTKDVITIHEDASILEAIKKmDI------IINQLPVVDKNNKLVGIISDGDIIRTISKI 137
                                    12 |      22        32 |      42        52        62        72      | 82        92      | |-     | 112       122       132     
                                      14-MSE              34-MSE                                       79-MSE              99-MSE  108                             
                                                                                                                            101                                    


Chain C from PDB  Type:PROTEIN  Length:129
 aligned with Y922_METJA | Q58332 from UniProtKB/Swiss-Prot  Length:138

    Alignment length:134
                                    13        23        33        43        53        63        73        83        93       103       113       123       133    
           Y922_METJA     4 TLKNIKVKDVMTKNVITAKRHEGVVEAFEKMLKYKISSLPVIDDENKVIGIVTTTDIGYNLIRDKYTLETTIGDVMTKDVITIHEDASILEAIKKMDISGKKEEIINQLPVVDKNNKLVGIISDGDIIRTISKI 137
               SCOP domains d2p9mc_ C: automated matches                                                                                                           SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhh...........hhhhhhhhhhhhh..eeeee.....eeeeeehhhhhhhhhh.......hhhhhh......ee...hhhhhhhhhhh..-----..eeeee.....eeeeeehhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------CBS  PDB: C:14-70 UniProt: 14-70                         --------CBS  PDB: C:79-137 UniProt: 79-138                          PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2p9m C   4 TLKNIKVKDVmTKNVITAKRHEGVVEAFEKmLKYKISSLPVIDDENKVIGIVTTTDIGYNLIRDKYTLETTIGDVmTKDVITIHEDASILEAIKKmDISG-----INQLPVVDKNNKLVGIISDGDIIRTISKI 137
                                    13|       23        33|       43        53        63        73     |  83        93     | 103     | 113       123       133    
                                     14-MSE              34-MSE                                       79-MSE              99-MSE   109                            


Chain D from PDB  Type:PROTEIN  Length:128
 aligned with Y922_METJA | Q58332 from UniProtKB/Swiss-Prot  Length:138

    Alignment length:135
                                    12        22        32        42        52        62        72        82        92       102       112       122       132     
           Y922_METJA     3 DTLKNIKVKDVMTKNVITAKRHEGVVEAFEKMLKYKISSLPVIDDENKVIGIVTTTDIGYNLIRDKYTLETTIGDVMTKDVITIHEDASILEAIKKMDISGKKEEIINQLPVVDKNNKLVGIISDGDIIRTISKI 137
               SCOP domains d2p9md_ D: automated matches                                                                                                            SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) ------------------------------------------------------------------------CBS-2p9mD01 D:75-136                                          - Pfam domains (1)
           Pfam domains (2) ------------------------------------------------------------------------CBS-2p9mD02 D:75-136                                          - Pfam domains (2)
           Pfam domains (3) ------------------------------------------------------------------------CBS-2p9mD03 D:75-136                                          - Pfam domains (3)
           Pfam domains (4) ------------------------------------------------------------------------CBS-2p9mD04 D:75-136                                          - Pfam domains (4)
           Pfam domains (5) ------------------------------------------------------------------------CBS-2p9mD05 D:75-136                                          - Pfam domains (5)
           Pfam domains (6) ------------------------------------------------------------------------CBS-2p9mD06 D:75-136                                          - Pfam domains (6)
           Pfam domains (7) ------------------------------------------------------------------------CBS-2p9mD07 D:75-136                                          - Pfam domains (7)
           Pfam domains (8) ------------------------------------------------------------------------CBS-2p9mD08 D:75-136                                          - Pfam domains (8)
         Sec.struct. author hhhhh.hhhhhh...........hhhhhhhhhhhh...eeeee.....eeeeeehhhhhhhhhh...................ee...hhhhhhhhhhh-------..eeeee.....eeeeeehhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----------CBS  PDB: D:14-70 UniProt: 14-70                         --------CBS  PDB: D:79-137 UniProt: 79-138                          PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2p9m D   3 DTLKNIKVKDVmTKNVITAKRHEGVVEAFEKmLKYKISSLPVIDDENKVIGIVTTTDIGYNLIRDKYTLETTIGDVmTKDVITIHEDASILEAIKKmDI-------INQLPVVDKNNKLVGIISDGDIIRTISKI 137
                                    12 |      22        32 |      42        52        62        72      | 82        92      | |-      |112       122       132     
                                      14-MSE              34-MSE                                       79-MSE              99-MSE   109                            
                                                                                                                            101
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 4)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2P9M)

(-) Pfam Domains  (1, 8)

Asymmetric Unit
(-)
Clan: no clan defined [family: CBS] (51)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
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