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(-) Description

Title :  CRYSTAL STRUCTURE OF A PUTATIVE METAL-DEPENDENT HYDROLASE (AVA_3068) FROM ANABAENA VARIABILIS ATCC 29413 AT 1.65 A RESOLUTION
 
Authors :  Joint Center For Structural Genomics (Jcsg)
Date :  23 Mar 07  (Deposition) - 17 Apr 07  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.65
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  A,B  (4x)
Biol. Unit 3:  A,B  (2x)
Keywords :  Putative Metal-Dependent Hydrolase, Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi-2, Metal Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of Hypothetical Protein (Yp_323572. 1) Fro Anabaena Variabilis Atcc 29413 At 1. 65 A Resolution
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - HYPOTHETICAL PROTEIN
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: SPEEDET
    Expression System Strain: HK100
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: YP_323572.1, AVA_3068
    Organism Scientific: ANABAENA VARIABILIS ATCC 29413
    Organism Taxid: 240292
    Strain: PCC 7937

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): AB
Biological Unit 2 (4x): AB
Biological Unit 3 (2x): AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 9)

Asymmetric Unit (3, 9)
No.NameCountTypeFull Name
1CL1Ligand/IonCHLORIDE ION
2MG2Ligand/IonMAGNESIUM ION
3MSE6Mod. Amino AcidSELENOMETHIONINE
Biological Unit 1 (1, 6)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2MG-1Ligand/IonMAGNESIUM ION
3MSE6Mod. Amino AcidSELENOMETHIONINE
Biological Unit 2 (1, 24)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2MG-1Ligand/IonMAGNESIUM ION
3MSE24Mod. Amino AcidSELENOMETHIONINE
Biological Unit 3 (1, 12)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2MG-1Ligand/IonMAGNESIUM ION
3MSE12Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHIS A:66 , ASP A:136 , ASP A:180 , HOH A:219 , HOH A:221 , HOH A:269BINDING SITE FOR RESIDUE MG A 201
2AC2SOFTWAREHIS B:66 , ASP B:136 , ASP B:180 , HOH B:203 , HOH B:206 , HOH B:210BINDING SITE FOR RESIDUE MG B 201
3AC3SOFTWARETYR A:94 , ASN B:44BINDING SITE FOR RESIDUE CL B 202

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2P97)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2P97)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2P97)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2P97)

(-) Exons   (0, 0)

(no "Exon" information available for 2P97)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:201
 aligned with Q3M8K9_ANAVT | Q3M8K9 from UniProtKB/TrEMBL  Length:200

    Alignment length:201
                             1                                                                                                                                                                                                       
                             |       9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199 
         Q3M8K9_ANAVT     - -MKSLHRPDLYSWSTFNPARNIDFNGFAWIRPEGNILIDPVALSNHDWKHLESLGGVVWIVLTNSDHVRSAKEIADQTYTKIAGPVAEKENFPIYCDRWLSDGDELVPGLKVMELQGSKTPGELALLLEETTLITGDLVRAYRAGGLEILPDEKLMNKQKVVASVRRLAALEKVEAVLVGDGWSVFRDGRDRLKELVATLA 200
               SCOP domains -d2p97a1 A:1-200 Hypothetical protein Ava3068                                                                                                                                                             SCOP domains
               CATH domains 2p97A00 A:0-200 Metallo-beta-lactamase, chain A                                                                                                                                                           CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..ee.....eeeeeeee....eeeeeeee......eee.....hhhhhhhhhhh....eee..hhhhh.hhhhhhhhh..eeeee.hhh........eee.........eeeeee.......eeeeee...eeee...ee.......ee.hhhhh.hhhhhhhhhhhhhh.....eeee........hhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2p97 A   0 GmKSLHRPDLYSWSTFNPARNIDFNGFAWIRPEGNILIDPVALSNHDWKHLESLGGVVWIVLTNSDHVRSAKEIADQTYTKIAGPVAEKENFPIYCDRWLSDGDELVPGLKVmELQGSKTPGELALLLEETTLITGDLVRAYRAGGLEILPDEKLmNKQKVVASVRRLAALEKVEAVLVGDGWSVFRDGRDRLKELVATLA 200
                             |       9        19        29        39        49        59        69        79        89        99       109  |    119       129       139       149     | 159       169       179       189       199 
                             |                                                                                                            112-MSE                                    155-MSE                                         
                             1-MSE                                                                                                                                                                                                   


Chain B from PDB  Type:PROTEIN  Length:201
 aligned with Q3M8K9_ANAVT | Q3M8K9 from UniProtKB/TrEMBL  Length:200

    Alignment length:201
                             1                                                                                                                                                                                                       
                             |       9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199 
         Q3M8K9_ANAVT     - -MKSLHRPDLYSWSTFNPARNIDFNGFAWIRPEGNILIDPVALSNHDWKHLESLGGVVWIVLTNSDHVRSAKEIADQTYTKIAGPVAEKENFPIYCDRWLSDGDELVPGLKVMELQGSKTPGELALLLEETTLITGDLVRAYRAGGLEILPDEKLMNKQKVVASVRRLAALEKVEAVLVGDGWSVFRDGRDRLKELVATLA 200
               SCOP domains d2p97b_ B: Hypothetical protein Ava3068                                                                                                                                                                   SCOP domains
               CATH domains 2p97B00 B:0-200 Metallo-beta-lactamase, chain A                                                                                                                                                           CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..ee.....eeeeeeee....eeeeeeee......eee.....hhhhhhhhhhh....eee..hhhhh.hhhhhhhhh..eeeee.hhhhhh.....eee.........eeeeee.......eeeeee...eeee...ee.......ee.hhhhh.hhhhhhhhhhhhhh.....eeee........hhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2p97 B   0 GmKSLHRPDLYSWSTFNPARNIDFNGFAWIRPEGNILIDPVALSNHDWKHLESLGGVVWIVLTNSDHVRSAKEIADQTYTKIAGPVAEKENFPIYCDRWLSDGDELVPGLKVmELQGSKTPGELALLLEETTLITGDLVRAYRAGGLEILPDEKLmNKQKVVASVRRLAALEKVEAVLVGDGWSVFRDGRDRLKELVATLA 200
                             |       9        19        29        39        49        59        69        79        89        99       109  |    119       129       139       149     | 159       169       179       189       199 
                             1-MSE                                                                                                        112-MSE                                    155-MSE
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (1, 2)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2P97)

(-) Gene Ontology  (1, 1)

Asymmetric Unit(hide GO term definitions)
Chain A,B   (Q3M8K9_ANAVT | Q3M8K9)
molecular function
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.

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