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(-) Description

Title :  CRYSTAL STRUCTURE OF THE PATHOGENICITY ISLAND 1 EFFECTOR PROTEIN FROM CHROMOBACTERIUM VIOLACEUM. NORTHEAST STRUCTURAL GENOMICS CONSORTIUM (NESGC) TARGET CVR69.
 
Authors :  J. Benach, M. Abashidze, J. Seetharaman, L. Zhao, H. Janjua, K. Cunningham, L. C. Ma, R. Xiao, J. Liu, M. C. Baran, T. B. Acton, B. Rost G. T. Montelione, J. F. Hunt, L. Tong, Northeast Structural Genomics Consortium (Nesg)
Date :  20 Mar 07  (Deposition) - 03 Apr 07  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.80
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (2x)
Keywords :  Cvr69, Pathogenicity Island 1 Effector Protein, Structural Genomics, Psi-2, Protein Structure Initiative, Northeast Structural Genomics Consortium, Nesg, Cell Invasion (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. Benach, M. Abashidze, J. Seetharaman, L. Zhao, H. Janjua, K. Cunningham, L. C. Ma, R. Xiao, J. Liu, M. C. Baran, T. B. Acton, B. Rost, G. T. Montelione, J. F. Hunt, L. Tong, Northeast Structural Genomics Consortium (Nesg)
Crystal Structure Of The Pathogenicity Island 1 Effector Protein From Chromobacterium Violaceum. Northeast Structural Genomics Consortium (Nesgc) Target Cvr69.
To Be Published
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - PATHOGENICITY ISLAND 1 EFFECTOR PROTEIN
    Atcc: 12472
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET21
    Expression System Strain: BL21(DE3)+MAGIC
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: SIPD, CV_2617
    Organism Scientific: CHROMOBACTERIUM VIOLACEUM
    Organism Taxid: 536
    Strain: DSM 30191, IFO 12614, JCM 1249, NCIB 9131

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (2x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 8)

Asymmetric Unit (1, 8)
No.NameCountTypeFull Name
1MSE8Mod. Amino AcidSELENOMETHIONINE
Biological Unit 1 (1, 16)
No.NameCountTypeFull Name
1MSE16Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (0, 0)

(no "Site" information available for 2P7N)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2P7N)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1Phe A:266 -Pro A:267
2Pro A:297 -Pro A:298

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2P7N)

(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:335
 aligned with Q7NUT0_CHRVO | Q7NUT0 from UniProtKB/TrEMBL  Length:399

    Alignment length:346
                                    56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376       386      
         Q7NUT0_CHRVO    47 PALAAARAKADELGQAAREVRASVERQTAYETRLAAQRSAAAFSGGEPPQARREAPGAELDEARNAQTVSARLFEGNLKGVAQSGHAMSAEQKQALQSGLDDVFADAPPQARSAGAPMLYSANAAAGQGMADSDLWDMISDQIGKIKDNYLGVYENVVGQYTDFYKAFSDILSQMANWIKPGGDGNKVKLNVDALKAALEKLKKDFSLGDNLDNKKAVLFPAQSKDGGIQGGSESDARKWAKEMGLPDAPPPGFSCVQKAADGNWVVVVDMTPIDTMIRDVGALGSGTELELDNAKFQAWQSGFKAQEENLKNTLQTLTQKYSNANSLFDNLVKVLSSTISSCLET 392
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains IpaD-2p7nA01 A:47-392                                                                                                                                                                                                                                                                                                                                      Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....-...........hhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhh..hhhhhh.hhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh---------..hhhhhhhhhhhhhhhh...........eee............hhhhhhhhhhhh............eee.....eeee..hhhhhhhhhhhhhh....-......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2p7n A  47 PALAAARAKADELGQAAREVRASVERQTAYETRLAAQRSAAAFSGGEPP-ARREAPGAELDEARNAQTVSARLFEGNLKGVAQSGHAmSAEQKQALQSGLDDVFADAPPQARSAGAPmLYSANAAAGQGmADSDLWDmISDQIGKIKDNYLGVYENVVGQYTDFYKAFSDILSQmANWI---------KLNVDALKAALEKLKKDFSLGDNLDNKKAVLFPAQSKDGGIQGGSESDARKWAKEmGLPDAPPPGFSCVQKAADGNWVVVVDmTPIDTmIRDVGALGSGT-LELDNAKFQAWQSGFKAQEENLKNTLQTLTQKYSNANSLFDNLVKVLSSTISSCLET 392
                                    56        66        76        86        |-|      106       116       126       136       146       156       166       176       186       196       206       216    |   |-       236       246       256       266       276       286   |   296       306       316|     |326       336       346       356       366       376       386      
                                                                           95 |                                  134-MSE                       164-MSE     176-MSE 184-MSE                              221-MSE       235                                                    290-MSE                    317-MSE |        334 |                                                        
                                                                             97                                                                                                                                                                                                                               323-MSE      336
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2P7N)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2P7N)

(-) Pfam Domains  (1, 1)

Asymmetric Unit
(-)
Clan: no clan defined [family: IpaD] (6)

(-) Gene Ontology  (1, 1)

Asymmetric Unit(hide GO term definitions)
Chain A   (Q7NUT0_CHRVO | Q7NUT0)
biological process
    GO:0009405    pathogenesis    The set of specific processes that generate the ability of an organism to induce an abnormal, generally detrimental state in another organism.

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 Related Entries

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(-) Related Entries Specified in the PDB File

2jaa SHIGELLA FLEXNERI IPAD