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(-) Description

Title :  X-RAY STRUCTURE OF THE PROTEIN Q9KM02_VIBCH FROM VIBRIO CHOLERAE AT THE RESOLUTION 1.63 A. NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET VCR80.
 
Authors :  A. P. Kuzin, M. Abashidze, S. Jayaraman, C. X. Chen, C. Wang, Y. Fang, K. Cunningham, L. Owens, R. Xiao, J. Liu, M. C. Baran, T. B. Acton, B. Ros G. T. Montelione, L. Tong, J. Hunt, Northeast Structural Genomics Consortium (Nesg)
Date :  19 Mar 07  (Deposition) - 05 Jun 07  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.63
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (3x)
Biol. Unit 2:  A  (24x)
Keywords :  Nesg, Q9Km02_vibch, Vcr80, Structural Genomics, Psi-2, Protein Structure Initiative, Northeast Structural Genomics Consortium, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. P. Kuzin, M. Abashidze, S. Jayaraman, C. X. Chen, C. Wang, Y. Fang, K. Cunningham, L. Owens, R. Xiao, J. Liu, M. C. Baran, T. B. Acton, B. Rost, G. T. Montelione, L. Tong, J. Hunt
X-Ray Structure Of The Protein Q9Km02_vibch From Vibrio Cholerae At The Resolution 1. 63 A.
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - HYPOTHETICAL PROTEIN VCA0587
    Atcc: 39315
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: VCA0587
    Organism Scientific: VIBRIO CHOLERAE
    Organism Taxid: 666
    Strain: EL TOR INABA N16961

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (3x): A
Biological Unit 2 (24x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 4)

Asymmetric Unit (2, 4)
No.NameCountTypeFull Name
1MSE3Mod. Amino AcidSELENOMETHIONINE
2ZN1Ligand/IonZINC ION
Biological Unit 1 (1, 9)
No.NameCountTypeFull Name
1MSE9Mod. Amino AcidSELENOMETHIONINE
2ZN-1Ligand/IonZINC ION
Biological Unit 2 (1, 72)
No.NameCountTypeFull Name
1MSE72Mod. Amino AcidSELENOMETHIONINE
2ZN-1Ligand/IonZINC ION

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLU A:61 , HIS A:75 , HIS A:77 , HIS A:91BINDING SITE FOR RESIDUE ZN A 201

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2P6Y)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2P6Y)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2P6Y)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2P6Y)

(-) Exons   (0, 0)

(no "Exon" information available for 2P6Y)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:131
 aligned with Q9KM02_VIBCH | Q9KM02 from UniProtKB/TrEMBL  Length:130

    Alignment length:132
                                                                                                                                                           130  
                                    10        20        30        40        50        60        70        80        90       100       110       120       130  
         Q9KM02_VIBCH     1 MIHLIALRLTRGMDLKQQIVQLVQQHRIHAGSIASCVGCLSTLHIRLADSVSTLQVSAPFEILSLSGTLTYQHCHLHIAVADAQGRVWGGHLLEGNLINTTAELMIHHYPQHHFTREFDPNTGYSELVVS--   -
               SCOP domains d2p6ya_ A: automated matches                                                                                                         SCOP domains
               CATH domains -2p6yA00 A:2-132 Hypothetical protein, similar to alpha- acetolactate decarboxylase; domain 2                                        CATH domains
               Pfam domains -DUF296-2p6yA01 A:2-116                                                                                             ---------------- Pfam domains
         Sec.struct. author ..eeeeeee....hhhhhhhhhhhhh....eeeeeeeeeeeeeeee......eeee...eeeeeeeeee....eeeeeeee.....eeeeee....eee-eeeeeeee...eeeeeee......eeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2p6y A   1 mIHLIALRLTRGmDLKQQIVQLVQQHRIHAGSIASCVGCLSTLHIRLADSVSTLQVSAPFEILSLSGTLTYQHCHLHIAVADAQGRVWGGHLLEGNLIN-TAELmIHHYPQHHFTREFDPNTGYSELVVSAA 132
                            |       10  |     20        30        40        50        60        70        80        90        |-|   |  110       120       130  
                            |          13-MSE                                                                                99 |   |                           
                            1-MSE                                                                                             101   |                           
                                                                                                                                  105-MSE
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (1, 1)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (1, 1)

Asymmetric Unit
(-)
Clan: no clan defined [family: DUF296] (2)

(-) Gene Ontology  (4, 4)

Asymmetric Unit(hide GO term definitions)
Chain A   (Q9KM02_VIBCH | Q9KM02)
molecular function
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0003674    molecular_function    Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions.
biological process
    GO:0008150    biological_process    Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
cellular component
    GO:0005575    cellular_component    The part of a cell, extracellular environment or virus in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

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(-) Related Entries Specified in the PDB File

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