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(-) Description

Title :  THE E. COLI C3393 PROTEIN IS A COMPONENT OF THE TYPE VI SECRETION SYSTEM AND EXHIBITS STRUCTURAL SIMILARITY TO T4 BACTERIOPHAGE TAIL PROTEINS GP27 AND GP5
 
Authors :  U. A. Ramagopal, J. B. Bonanno, V. Sridhar, C. Lau, R. Toro, T. Gheyi, M. M J. C. Freeman, J. M. Sauder, S. K. Burley, S. C. Almo, New York Sgx Res Center For Structural Genomics (Nysgxrc)
Date :  16 Mar 07  (Deposition) - 03 Apr 07  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.60
Chains :  Asym. Unit :  X
Biol. Unit 1:  X  (3x)
Keywords :  Structural Genomics, Unknown Function, Psi-2, Protein Structure Initiative, New York Sgx Research Center For Structural Genomics, Nysgxrc (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  P. G. Leiman, M. Basler, U. A. Ramagopal, J. B. Bonanno, J. M. Sauder, S. Pukatzki, S. K. Burley, S. C. Almo, J. J. Mekalanos
Type Vi Secretion Apparatus And Phage Tail-Associated Protein Complexes Share A Common Evolutionary Origin.
Proc. Natl. Acad. Sci. Usa V. 106 4154 2009
PubMed-ID: 19251641  |  Reference-DOI: 10.1073/PNAS.0813360106

(-) Compounds

Molecule 1 - TYPE VI SECRETION SYSTEM COMPONENT
    Atcc: 700928
    Chains: X
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: BC-PSGX3(BC)
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: N-TERMINAL DOMAIN
    Gene: C3393
    Organism Scientific: ESCHERICHIA COLI O6
    Organism Taxid: 217992

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : X
Biological Unit 1 (3x): X

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 2P5Z)

(-) Sites  (0, 0)

(no "Site" information available for 2P5Z)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2P5Z)

(-) Cis Peptide Bonds  (10, 10)

Asymmetric Unit
No.Residues
1Arg X:208 -Gly X:209
2Leu X:214 -Arg X:215
3Ser X:292 -Gly X:293
4Gly X:293 -Ala X:294
5Gly X:330 -Asp X:331
6Asp X:396 -Ile X:397
7Gly X:405 -Arg X:406
8Leu X:444 -Leu X:445
9Leu X:445 -Ala X:446
10Ala X:465 -Gly X:466

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2P5Z)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2P5Z)

(-) Exons   (0, 0)

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(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain X from PDB  Type:PROTEIN  Length:361
 aligned with A0A0H2VBP9_E | A0A0H2VBP9 from UniProtKB/TrEMBL  Length:824

    Alignment length:454
                                    24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454       464    
         A0A0H2VBP9_E    15 HKLKIRGLQSPVDVLTFEGREQLSTPFRYDIQFTSSDKAIAPESVLMQDGAFSLTAPPVQGMPVQTALRTLHGVITGFKHLSSSQDEARYEVRLEPRMALLTRSRQNAIYQNQTVPQIVEKILRERHQMRGQDFVFNLKSEYPAREQVMQYGEDDLTFVSRLLSEVGIWFRFATDARLKIEVIEFYDDQSGYERGLTLPLRHPSGLFDGETEAVWGLNTAYSVVEKSVSTRDYNYREATAEMTTGQHDATGGDNTTYGEAYHYADNFLQQGDKEAAESGAFYARIRHERYLNEQAILKGQSTSSLLMPGLEIKVQGDDAPAVFRKGVLITGVTTSAARDRSYELTFTAIPYSERYGYRPALIPRPVMAGTLPARVTSTVKNDIYAHIDKDGRYRVNLDFDRDTWKPGYESLWVRQSRPYAGDTYGLHLPLLAGTEVSIAFEEGNPDRPYIAGVK 468
               SCOP domains d2p5zx2 X:15-201 Hypothetical protein c3393                                                                                                                                                d2p5zx3 X:202-         377 Hypotheti                                                      cal protein c3393                                                                     d2p5zx1 X:378-    468 Hypothetical p rotein c3393                                           SCOP domains
               CATH domains --------------------------------------------------------          -----------------------------2p5zX02 X:110-206 Baseplate protein-like domains                                                 ---------         -------------                                                      -2p5zX03         ---------------------------------------------------------------------------2p5zX04     X:384-468 gp5 N-te rminal domain-               like domain               CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee.......eeeeeeeeee.....eeeeeeee.....hhhhh...eeeeee..----------..eeeeeeeeeeeeeee....eeeeeeeehhhhhhhh....eeeeeehhhhhhhhhhhh........eeee.......eeeeee...hhhhhhhhhhhhhh.eeeeeee....eeeeeee.hhhhheeeeee...---------...eeeeeeee..------------------------------------------------------...hhhhhhhhhhhhh.eeeeeee........eeeee.....hhhhhhheeeeeeeeeee.....eeeeeeee....................eeeee..----...........eeee...-.........eeee.---------------.....eeeeee.hhh...eeeeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2p5z X  15 HKLKIRGLQSPVDVLTFEGREQLSTPFRYDIQFTSSDKAIAPESVLMQDGAFSLTA----------ALRTLHGVITGFKHLSSSQDEARYEVRLEPRMALLTRSRQNAIYQNQTVPQIVEKILRERHQMRGQDFVFNLKSEYPAREQVMQYGEDDLTFVSRLLSEVGIWFRFATDARLKIEVIEFYDDQSGYERGLTLPLR---------TEAVWGLNTAYSV------------------------------------------------------SGAFYARIRHERYLNEQAILKGQSTSSLLMPGLEIKVQGDDAPAVFRKGVLITGVTTSAARDRSYELTFTAIPYSERYGYRPALIPRPVMAGTLPARVTS----DIYAHIDKDGRYRVNLDF-RDTWKPGYESLWVR---------------LLAGTEVSIAFEEGNPDRPYIAGVK 468
                                    24        34        44        54        64     |   -      | 84        94       104       114       124       134       144       154       164       174       184       194       204       214|        -|      234  |      -         -         -         -         -       294       304       314       324       334       344       354       364       374       384      |  - |     404        |-|      424   |     -       444       454       464    
                                                                                  70         81                                                                                                                                   215       225         237                                                    292                                                                                                391  396              413 |          428             444                        
                                                                                                                                                                                                                                                                                                                                                                                                                                          415
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 3)

Asymmetric Unit
(-)
Class: All beta proteins (24004)

(-) CATH Domains  (3, 3)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)
(-)
Class: Few Secondary Structures (1120)
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2P5Z)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
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  Cis Peptide Bonds
    Ala X:465 - Gly X:466   [ RasMol ]  
    Arg X:208 - Gly X:209   [ RasMol ]  
    Asp X:396 - Ile X:397   [ RasMol ]  
    Gly X:293 - Ala X:294   [ RasMol ]  
    Gly X:330 - Asp X:331   [ RasMol ]  
    Gly X:405 - Arg X:406   [ RasMol ]  
    Leu X:214 - Arg X:215   [ RasMol ]  
    Leu X:444 - Leu X:445   [ RasMol ]  
    Leu X:445 - Ala X:446   [ RasMol ]  
    Ser X:292 - Gly X:293   [ RasMol ]  
 
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