2P5X - JenaLib

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Title :   CRYSTAL STRUCTURE OF MAF DOMAIN OF HUMAN N-ACETYLSEROTONIN O-METHYLTRANSFERASE-LIKE PROTEIN

Authors :   J. Min, H. Wu, L. Dombrovski, P. Loppnau, J. Weigelt, M. Sundstrom, C. H. Arrowsmith, A. M. Edwards, A. Bochkarev, A. N. Plotnikov, Struct Genomics Consortium (Sgc)

Date :   16 Mar 07 (Deposition) - 27 Mar 07 (Release) - 15 Jan 14 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.00

Chains :   Asym. Unit : A,B
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)

Keywords :   Asmtl, Structural Genomics, Structural Genomics Consortium, Sgc, Cell Cycle (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   A. Tchigvintsev, D. Tchigvintsev, R. Flick, A. Popovic, A. Dong, X. Xu G. Brown, W. Lu, H. Wu, H. Cui, L. Dombrowski, J. C. Joo, N. Beloglazova, J. Min, A. Savchenko, A. A. Caudy, J. D. Rabinowitz, A. G. Murzin, A. F. Yakunin
Biochemical And Structural Studies Of Conserved Maf Protein Revealed Nucleotide Pyrophosphatases With A Preference For Modified Nucleotides.
Chem. Biol. V. 20 1386 2013
PubMed-ID: 24210219 | Reference-DOI: 10.1016/J.CHEMBIOL.2013.09.011

Molecule 1 - N-ACETYLSEROTONIN O-METHYLTRANSFERASE-LIKE PROTEIN
	Chains	:	A, B
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI BL21(DE3)
	Expression System Plasmid	:	PET28A-MHL
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	469008
	Expression System Vector Type	:	PLASMID
	Fragment	:	MAF DOMAIN
	Gene	:	ASMTL
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606
	Synonym	:	ASMTL

		1	2
Asymmetric Unit	:	A	B
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (1, 2)

No.	Name	Count	Type	Full Name
1	PO4	2	Ligand/Ion	PHOSPHATE ION

Biological Unit 1 (1, 1)

No.	Name	Count	Type	Full Name
1	PO4	1	Ligand/Ion	PHOSPHATE ION

Biological Unit 2 (1, 1)

No.	Name	Count	Type	Full Name
1	PO4	1	Ligand/Ion	PHOSPHATE ION

Asymmetric Unit (2, 2)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	SER A:19 , ALA A:20 , ARG A:24 , LYS A:65 , HOH A:448	BINDING SITE FOR RESIDUE PO4 A 301
2	AC2	SOFTWARE	SER B:19 , ALA B:20 , SER B:21 , ARG B:24 , LYS B:65	BINDING SITE FOR RESIDUE PO4 B 301

(no "SS Bond" information available for 2P5X)

(no "Cis Peptide Bond" information available for 2P5X)

(no "SAP(SNP)/Variant" information available for 2P5X)

(no "PROSITE Motif" information available for 2P5X)

Asymmetric Unit (7, 14)

	ENSEMBL					UniProtKB			PDB
No.	Transcript ID	Exon	Exon ID	Genome Location	Length	ID	Location	Length	Count	Location	Length
1.1b	ENST00000381317	1b	ENSE00002172831	X:1571766-1571641	126	ASML_HUMAN	1-31	31	2	A:10-31 B:10-31	22 22
1.2a	ENST00000381317	2a	ENSE00001605694	X:1561210-1561079	132	ASML_HUMAN	32-75	44	2	A:32-75 B:32-75	44 44
1.3	ENST00000381317	3	ENSE00001597356	X:1558037-1557990	48	ASML_HUMAN	76-91	16	2	A:76-91 B:76-91	16 16
1.4a	ENST00000381317	4a	ENSE00001122412	X:1554651-1554587	65	ASML_HUMAN	92-113	22	2	A:92-113 B:92-113	22 22
1.5b	ENST00000381317	5b	ENSE00001122403	X:1553976-1553915	62	ASML_HUMAN	113-134	22	2	A:113-134 B:113-134	22 22
1.6a	ENST00000381317	6a	ENSE00001122397	X:1551270-1551162	109	ASML_HUMAN	134-170	37	2	A:134-170 B:134-170	37 37
1.7a	ENST00000381317	7a	ENSE00001122391	X:1547014-1546627	388	ASML_HUMAN	170-299	130	2	A:170-213 B:170-213 (gaps)	44 44
1.8	ENST00000381317	8	ENSE00001122384	X:1544580-1544418	163	ASML_HUMAN	300-354	55	0	-	-
1.9	ENST00000381317	9	ENSE00001122378	X:1540735-1540551	185	ASML_HUMAN	354-415	62	0	-	-
1.10	ENST00000381317	10	ENSE00001122372	X:1538007-1537875	133	ASML_HUMAN	416-460	45	0	-	-
1.11	ENST00000381317	11	ENSE00001122363	X:1537009-1536866	144	ASML_HUMAN	460-508	49	0	-	-
1.12	ENST00000381317	12	ENSE00001122361	X:1531747-1531625	123	ASML_HUMAN	508-549	42	0	-	-
1.13	ENST00000381317	13	ENSE00001555512	X:1522382-1522034	349	ASML_HUMAN	549-621	73	0	-	-

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:204
 aligned with ASML_HUMAN | O95671 from UniProtKB/Swiss-Prot  Length:621

    Alignment length:204
                                    19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209    
           ASML_HUMAN    10 LLHKRVVLASASPRRQEILSNAGLRFEVVPSKFKEKLDKASFATPYGYAMETAKQKALEVANRLYQKDLRAPDVVIGADTIVTVGGLILEKPVDKQDAYRMLSRLSGREHSVFTGVAIVHCSSKDHQLDTRVSEFYEETKVKFSELSEELLWEYVHSGEPMDKAGGYGIQALGGMLVESVHGDFLNVVGFPLNHFCKQLVKLYY 213
               SCOP domains d2p5xa_ A: automated matches                                                                                                                                                                                 SCOP domains
               CATH domains 2p5xA00 A:10-213  [code=3.90.950.10, no name defined]                                                                                                                                                        CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .....eee...hhhhhhhhhhh....ee.........hhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhh....eeeeeeeeeee..eee....hhhhhhhhhhhhh..eeeeeeeeeeeeeeee..eeeeeeeeeeeeeeeee...hhhhhhhhhhhhhhhhhhhhh...hhhhh.eeeeeehhhhhhh.hhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
           Transcript 1 (1) Exon 1.1b  PDB: A:10-3Exon 1.2a  PDB: A:32-75 UniProt: 32-75      Exon 1.3        Exon 1.4a             --------------------Exon 1.6a  PDB: A:134-170            ------------------------------------------- Transcript 1 (1)
           Transcript 1 (2) -------------------------------------------------------------------------------------------------------Exon 1.5b             -----------------------------------Exon 1.7a  PDB: A:170-213 UniProt: 170-299   Transcript 1 (2)
                 2p5x A  10 LLHKRVVLASASPRRQEILSNAGLRFEVVPSKFKEKLDKASFATPYGYAMETAKQKALEVANRLYQKDLRAPDVVIGADTIVTVGGLILEKPVDKQDAYRMLSRLSGREHSVFTGVAIVHCSSKDHQLDTRVSEFYEETKVKFSELSEELLWEYVHSGEPMDKAGGYGIQALGGMLVESVHGDFLNVVGFPLNHFCKQLVKLYY 213
                                    19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209

Chain B from PDB  Type:PROTEIN  Length:201
 aligned with ASML_HUMAN | O95671 from UniProtKB/Swiss-Prot  Length:621

    Alignment length:204
                                    19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209    
           ASML_HUMAN    10 LLHKRVVLASASPRRQEILSNAGLRFEVVPSKFKEKLDKASFATPYGYAMETAKQKALEVANRLYQKDLRAPDVVIGADTIVTVGGLILEKPVDKQDAYRMLSRLSGREHSVFTGVAIVHCSSKDHQLDTRVSEFYEETKVKFSELSEELLWEYVHSGEPMDKAGGYGIQALGGMLVESVHGDFLNVVGFPLNHFCKQLVKLYY 213
               SCOP domains d2p5xb_ B: automated matches                                                                                                                                                                                 SCOP domains
               CATH domains 2p5xB00 B:10-213  [code=3.90.950.10, no name defined]                                                                                                                                                        CATH domains
           Pfam domains (1) ---Maf-2p5xB01 B:13-213                                                                                                                                                                                      Pfam domains (1)
           Pfam domains (2) ---Maf-2p5xB02 B:13-213                                                                                                                                                                                      Pfam domains (2)
         Sec.struct. author .....eee...hhhhhhhhhhh....ee.........hhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhh....eeeeeeeeee....ee....hhhhhhhhhhhhh..eeeeeeeeeeeeee......eeeeeeeeeeeeeee...hhhhhhhhhh......hhhhh...---...eeeeeehhhhhhh.hhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
           Transcript 1 (1) Exon 1.1b  PDB: B:10-3Exon 1.2a  PDB: B:32-75 UniProt: 32-75      Exon 1.3        Exon 1.4a             --------------------Exon 1.6a  PDB: B:134-170            ------------------------------------------- Transcript 1 (1)
           Transcript 1 (2) -------------------------------------------------------------------------------------------------------Exon 1.5b             -----------------------------------Exon 1.7a  PDB: B:170-213 (gaps)             Transcript 1 (2)
                 2p5x B  10 LLHKRVVLASASPRRQEILSNAGLRFEVVPSKFKEKLDKASFATPYGYAMETAKQKALEVANRLYQKDLRAPDVVIGADTIVTVGGLILEKPVDKQDAYRMLSRLSGREHSVFTGVAIVHCSSKDHQLDTRVSEFYEETKVKFSELSEELLWEYVHSGEPMDKAGGYGIQ---GMLVESVHGDFLNVVGFPLNHFCKQLVKLYY 213
                                    19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179   |   189       199       209    
                                                                                                                                                                                                   179 183

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Alpha and beta proteins (a/b) (23833)

Fold: Anticodon-binding domain-like (97)

Superfamily: ITPase-like (32)

Family: automated matches (13)

Protein domain: automated matches (13)

Human (Homo sapiens) [TaxId: 9606] (5)

1a	d2p5xa_	A:
1b	d2p5xb_	B:

Asymmetric Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Alpha Beta (26913)

Architecture: Alpha-Beta Complex (3881)

Topology: Maf protein (16)

Homologous Superfamily: [code=3.90.950.10, no name defined] (15)

Human (Homo sapiens) (1)

1a	2p5xB00	B:10-213
1b	2p5xA00	A:10-213

Asymmetric Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: Maf (1)

Family: Maf (1)

Homo sapiens (Human) (1)

1a	Maf-2p5xB01	B:13-213
1b	Maf-2p5xB02	B:13-213

Asymmetric Unit(hide GO term definitions)

Chain A,B (ASML_HUMAN | O95671)

molecular function
	GO:0008171	O-methyltransferase activity	Catalysis of the transfer of a methyl group to the oxygen atom of an acceptor molecule.
	GO:0008168	methyltransferase activity	Catalysis of the transfer of a methyl group to an acceptor molecule.
	GO:0003674	molecular_function	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions.
	GO:0005515	protein binding	Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
	GO:0016740	transferase activity	Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
biological process
	GO:0008150	biological_process	Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
	GO:0032259	methylation	The process in which a methyl group is covalently attached to a molecule.
cellular component
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

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Description

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Ligands, Modified Residues, Ions (1, 2)

Sites (2, 2)

SS Bonds (0, 0)

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Exons (7, 14)

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