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(-) Description

Title :  A FERREDOXIN-LIKE METALLO-BETA-LACTAMASE SUPERFAMILY PROTEIN FROM THERMOANAEROBACTER TENGCONGENSIS
 
Authors :  D. -C. Liang, S. -Y. Gu
Date :  14 Mar 07  (Deposition) - 18 Mar 08  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.10
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  A,B  (1x)
Keywords :  Metal-Dependent Hydrolases Of The Beta-Lactamase Superfamily Ii, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. -Y. Gu, X. -X. Yan, D. -C. Liang
Crystal Structure Of Tflp: A Ferredoxin-Like Metallo-Beta-Lactamase Superfamily Protein From Thermoanaerobacter Tengcongensis
Proteins V. 72 531 2008
PubMed-ID: 18431751  |  Reference-DOI: 10.1002/PROT.22069

(-) Compounds

Molecule 1 - METAL-DEPENDENT HYDROLASES OF THE BETA-LACTAMASE SUPERFAMILY II
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PQE30
    Expression System Strain: M15
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Organism Scientific: THERMOANAEROBACTER TENGCONGENSIS
    Organism Taxid: 273068
    Strain: MB4

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B
Biological Unit 3 (1x): AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 4)

Asymmetric Unit (1, 4)
No.NameCountTypeFull Name
1FE4Ligand/IonFE (III) ION
Biological Unit 1 (0, 0)
No.NameCountTypeFull Name
1FE-1Ligand/IonFE (III) ION
Biological Unit 2 (0, 0)
No.NameCountTypeFull Name
1FE-1Ligand/IonFE (III) ION
Biological Unit 3 (0, 0)
No.NameCountTypeFull Name
1FE-1Ligand/IonFE (III) ION

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHIS A:76 , HIS A:78 , CYS A:198 , HIS A:200BINDING SITE FOR RESIDUE FE A 1001
2AC2SOFTWAREASP A:80 , HIS A:81 , HIS A:255BINDING SITE FOR RESIDUE FE A 1002
3AC3SOFTWAREHIS B:76 , HIS B:78 , HIS B:200BINDING SITE FOR RESIDUE FE B 1003
4AC4SOFTWAREASP B:80 , HIS B:81 , HIS B:255BINDING SITE FOR RESIDUE FE B 1004

(-) SS Bonds  (2, 2)

Asymmetric Unit
No.Residues
1A:198 -A:256
2B:198 -B:256

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2P4Z)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2P4Z)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2P4Z)

(-) Exons   (0, 0)

(no "Exon" information available for 2P4Z)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:275
 aligned with Q8R8V2_CALS4 | Q8R8V2 from UniProtKB/TrEMBL  Length:272

    Alignment length:275
                               1                                                                                                                                                                                                                                                                               
                               |     7        17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267     
         Q8R8V2_CALS4     - ---MEVQVLIENVVFARNFVAEHGLSLLLKKGNKEIVVDTGQSENFIKNCGLMGIDVGRIKKVVLTHGHYDHIGGLKGLLERNPEVKIYTHKEILNKKYAMRKGGQFEEIGFDLSFYEKYKNNFVLIDKDAEIEEGFYVITNTDITYDNEFTTKNFFVEKEGKRIPDKFLDEVFVVVKEEDGINVVTGCSHAGILNILETARNRFGVSYIKSLIGGFHLRGMEEEKVKDIARKIEEYGVKKVLTGHCTGIDEYGFLKSVLKDKISYLTTSSSIVV 272
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeee...............eeeeee..eeeee.....hhhhhhhhhh..hhhhh.eee....hhhhhhhhhhhhhhh...eeeee.hhhh.eeee.....eee...hhhhhhhhh..eeee...eeee..eeee........hhhhhh.eeeee..eeee.......eeeeee..eeeeee.....hhhhhhhhhhhhhh.....eeee.......hhhhhhhhhhhhhhh....eee.hhhhhhhhhhhhhhhh..eee.....eee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2p4z A  10 HGSVEVQVLIENVVFARNFVAEHGLSLLLKKGNKEIVVDTGQSENFIKNCGLMGIDVGRIKKVVLTHGHYDHIGGLKGLLERNPEVKIYTHKEILNKKYAMRKGGQFEEIGFDLSFYEKYKNNFVLIDKDAEIEEGFYVITNTDITYDNEFTTKNFFVEKEGKRIPDKFLDEVFVVVKEEDGINVVTGCSHAGILNILETARNRFGVSYIKSLIGGFHLRGMEEEKVKDIARKIEEYGVKKVLTGHCTGIDEYGFLKSVLKDKISYLTTSSSIVV 284
                                    19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279     


Chain B from PDB  Type:PROTEIN  Length:276
 aligned with Q8R8V2_CALS4 | Q8R8V2 from UniProtKB/TrEMBL  Length:272

    Alignment length:276
                                1                                                                                                                                                                                                                                                                               
                                |    6        16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266      
         Q8R8V2_CALS4     - ----MEVQVLIENVVFARNFVAEHGLSLLLKKGNKEIVVDTGQSENFIKNCGLMGIDVGRIKKVVLTHGHYDHIGGLKGLLERNPEVKIYTHKEILNKKYAMRKGGQFEEIGFDLSFYEKYKNNFVLIDKDAEIEEGFYVITNTDITYDNEFTTKNFFVEKEGKRIPDKFLDEVFVVVKEEDGINVVTGCSHAGILNILETARNRFGVSYIKSLIGGFHLRGMEEEKVKDIARKIEEYGVKKVLTGHCTGIDEYGFLKSVLKDKISYLTTSSSIVV 272
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .....eeeeee...............eeeeee..eeeee.....hhhhhhhhhhh.hhhhh.eee....hhhhhhhhhhhhhhh...eeeee.hhhh.eeee.....eee...hhhhhhhh...eeee...eeee..eeee........hhhhhh.eeeee..eeee.......eeeeee..eeeeee.....hhhhhhhhhhhhhh.....eeee.......hhhhhhhhhhhhhhh....eee.hhhhhhhhhhhhhhhh..eee.....eee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2p4z B   9 HHGSVEVQVLIENVVFARNFVAEHGLSLLLKKGNKEIVVDTGQSENFIKNCGLMGIDVGRIKKVVLTHGHYDHIGGLKGLLERNPEVKIYTHKEILNKKYAMRKGGQFEEIGFDLSFYEKYKNNFVLIDKDAEIEEGFYVITNTDITYDNEFTTKNFFVEKEGKRIPDKFLDEVFVVVKEEDGINVVTGCSHAGILNILETARNRFGVSYIKSLIGGFHLRGMEEEKVKDIARKIEEYGVKKVLTGHCTGIDEYGFLKSVLKDKISYLTTSSSIVV 284
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2P4Z)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2P4Z)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2P4Z)

(-) Gene Ontology  (2, 2)

Asymmetric Unit(hide GO term definitions)
Chain A,B   (Q8R8V2_CALS4 | Q8R8V2)
molecular function
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.

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