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(-) Description

Title :  CRYSTAL STRUCTURE OF ATP11 FUNCTIONAL DOMAIN FROM CANDIDA GLABRATA
 
Authors :  A. V. Ludlam, J. S. Brunzelle, D. L. Gatti, S. H. Ackerman
Date :  12 Mar 07  (Deposition) - 11 Mar 08  (Release) - 17 Aug 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.40
Chains :  Asym./Biol. Unit :  A
Keywords :  Half Barrel, Chaperone (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. V. Ludlam, J. S. Brunzelle, T. Pribyl, D. L. Gatti, S. H. Ackerman
Crystal Structure Of Atp11 Functional Domain From Candida Glabrata
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - SIMILAR TO SP|P32453 SACCHAROMYCES CEREVISIAE YNL315C ATP11
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET28A
    Expression System Strain: B834(DE3), ROSETTA(DE3)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: CAGL0M04037G
    Organism Scientific: CANDIDA GLABRATA CBS 138
    Organism Taxid: 284593
    Strain: CBS138

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric/Biological Unit (1, 1)
No.NameCountTypeFull Name
1P6G1Ligand/IonHEXAETHYLENE GLYCOL

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLN A:116 , LEU A:155 , TYR A:182 , PHE A:277 , ASN A:278 , GLY A:280 , SER A:281 , GLN A:282 , HOH A:1009 , HOH A:1033 , HOH A:1103BINDING SITE FOR RESIDUE P6G A 1001

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2P4F)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2P4F)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2P4F)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2P4F)

(-) Exons   (0, 0)

(no "Exon" information available for 2P4F)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:193
 aligned with Q6FJS2_CANGA | Q6FJS2 from UniProtKB/TrEMBL  Length:309

    Alignment length:205
                                   114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304     
         Q6FJS2_CANGA   105 KDKPYKTLDDYLKLDKIKDLSKQEVEFLWRAKWSNRDDSLVAVVPYVKTFQGMYKYAVKNPLFVLPLPRENAADGNKADKDSVPVELQYVQWQFAGPNTVHCLITSLAEYKLHQDFAKPHTTIQFHLDLANDKDMVLMNGQVESDSNVSLQDAQLLLLNVQRFYGAMGSETSIAKERIQLLEDFNKGSQNFDINKLIQLAQSMEN 309
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ATP11-2p4fA01 A:94-293                                                                                                                                                                                  ----- Pfam domains
         Sec.struct. author ......hhhhhhhhhhhh..hhhhhhhhhhhhh.....eeeeeee...hhhhhhhhhhhh.eeeeeee..------------..eeeeeeeeeeee..eeeeeeee......hhhhhh..eeeeee..hhhhhheeeeeeee......hhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhh....hhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2p4f A  94 KDKPYKTLDDYLKLDKIKDLSKQEVEFLWRAKWSNRDDSLVAVVPYVKTFQGMYKYAVKNPLFVLPLPRE------------VPVELQYVQWQFAGPNTVHCLITSLAEYKLHQDFAKPHTTIQFHLDLANDKDMVLMNGQVESDSNVSLQDAQLLLLNVQRFYGAMGSETSIAKERIQLLEDFNKGSQNFDINKLIQLAQSMEN 298
                                   103       113       123       133       143       153       163         -  |    183       193       203       213       223       233       243       253       263       273       283       293     
                                                                                               163          176
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2P4F)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2P4F)

(-) Pfam Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Clan: no clan defined [family: ATP11] (1)

(-) Gene Ontology  (5, 5)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (Q6FJS2_CANGA | Q6FJS2)
molecular function
    GO:0051082    unfolded protein binding    Interacting selectively and non-covalently with an unfolded protein.
biological process
    GO:0033615    mitochondrial proton-transporting ATP synthase complex assembly    The aggregation, arrangement and bonding together of a proton-transporting ATP synthase in the mitochondrial inner membrane.
    GO:0007005    mitochondrion organization    A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a mitochondrion; includes mitochondrial morphogenesis and distribution, and replication of the mitochondrial genome as well as synthesis of new mitochondrial components.
    GO:0006461    protein complex assembly    The aggregation, arrangement and bonding together of a set of components to form a protein complex.
cellular component
    GO:0005739    mitochondrion    A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.

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