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(-) Description

Title :  CRYSTAL STRUCTURE OF THE CORC_HLYC DOMAIN OF A PUTATIVE CORYNEBACTERIUM GLUTAMICUM HEMOLYSIN
 
Authors :  M. E. Cuff, L. Volkart, M. Gu, A. Joachimiak, Midwest Center For Stru Genomics (Mcsg)
Date :  08 Mar 07  (Deposition) - 10 Apr 07  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.80
Chains :  Asym./Biol. Unit :  A
Keywords :  Structural Genomics, Corc_hlyc, Pfam03471, Putative Transport Protein, Transporter Associated Domain, Corynebacterium Glutamicum, Psi-2, Protein Structure Initiative, Midwest Center For Structural Genomics, Mcsg, Transport Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. E. Cuff, L. Volkart, M. Gu, A. Joachimiak
Structure Of The Corc_hlyc Domain Of A Putative Corynebacterium Glutamicum Hemolysin.
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - UNCHARACTERIZED CBS DOMAIN-CONTAINING PROTEIN
    Atcc: 13032
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PMCSG7
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: TLYC, CGL1194, CG1349
    Organism Scientific: CORYNEBACTERIUM GLUTAMICUM
    Organism Taxid: 1718
    Strain: DSM 20300, JCM 1318, LMG 3730, NCIMB 10025
    Synonym: MEMBRANE PROTEIN CONTAINING CBS DOMAIN, PUTATIVE HEMOLYSIN

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 12)

Asymmetric/Biological Unit (2, 12)
No.NameCountTypeFull Name
1BR9Ligand/IonBROMIDE ION
2EDO3Ligand/Ion1,2-ETHANEDIOL

(-) Sites  (11, 11)

Asymmetric Unit (11, 11)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREHOH A:304 , HOH A:466BINDING SITE FOR RESIDUE BR A 202
02AC2SOFTWAREPRO A:68 , GLU A:69 , HOH A:472BINDING SITE FOR RESIDUE BR A 203
03AC3SOFTWAREGLY A:19 , ASP A:20 , HOH A:345BINDING SITE FOR RESIDUE BR A 204
04AC4SOFTWAREGLU A:40 , THR A:41BINDING SITE FOR RESIDUE BR A 205
05AC5SOFTWARETHR A:56 , GLU A:88 , VAL A:89 , HOH A:441BINDING SITE FOR RESIDUE BR A 206
06AC6SOFTWARETHR A:56 , HOH A:441BINDING SITE FOR RESIDUE BR A 207
07AC7SOFTWAREASN A:92 , HOH A:379BINDING SITE FOR RESIDUE BR A 208
08AC8SOFTWAREALA A:52 , LEU A:53BINDING SITE FOR RESIDUE BR A 209
09AC9SOFTWAREILE A:7 , EDO A:302 , HOH A:351BINDING SITE FOR RESIDUE EDO A 301
10BC1SOFTWAREEDO A:301 , HOH A:387BINDING SITE FOR RESIDUE EDO A 302
11BC2SOFTWAREPHE A:47 , ASP A:48 , ASN A:51 , LEU A:53 , LYS A:55 , ASN A:92 , HOH A:393BINDING SITE FOR RESIDUE EDO A 303

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2P3H)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2P3H)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2P3H)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2P3H)

(-) Exons   (0, 0)

(no "Exon" information available for 2P3H)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:98
 aligned with Q8NR63_CORGL | Q8NR63 from UniProtKB/TrEMBL  Length:467

    Alignment length:98
                                   365       375       385       395       405       415       425       435       445        
         Q8NR63_CORGL   356 EDITETSPDKWLIDGDTPLDEVERAIGYELPEGDYETISGLLFDHANALLKTGDVIEIPLDFEPEDYLNNTSPTQRILRITVLEVERNVPVKLALALL 453
               SCOP domains d2p3ha1 A:5-102 Uncharacterized protein Cgl1194/Cg1349                                             SCOP domains
               CATH domains 2p3hA00 A:5-102  [code=3.30.465.10, no name defined]                                               CATH domains
               Pfam domains ---CorC_HlyC-2p3hA01 A:8-102                                                                       Pfam domains
         Sec.struct. author ..eeeee..eeeee...hhhhhhhhhh.........hhhhhhhhhhh.......eeeee...hhhhhh........eeeeeeeeee..eeeeeeeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------- Transcript
                 2p3h A   5 EDITETSPDKWLIDGDTPLDEVERAIGYELPEGDYETISGLLFDHANALLKTGDVIEIPLDFEPEDYLNNTSPTQRILRITVLEVERNVPVKLALALL 102
                                    14        24        34        44        54        64        74        84        94
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Clan: no clan defined [family: CorC_HlyC] (12)

(-) Gene Ontology  (6, 6)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (Q8NR63_CORGL | Q8NR63)
molecular function
    GO:0003824    catalytic activity    Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
    GO:0050660    flavin adenine dinucleotide binding    Interacting selectively and non-covalently with FAD, flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes, in either the oxidized form, FAD, or the reduced form, FADH2.
    GO:0016614    oxidoreductase activity, acting on CH-OH group of donors    Catalysis of an oxidation-reduction (redox) reaction in which a CH-OH group act as a hydrogen or electron donor and reduces a hydrogen or electron acceptor.
biological process
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
cellular component
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.

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