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(-) Description

Title :  TRANSPORTER ASSOCIATED DOMAIN CORC_HLYC FROM NITROSOMONAS EUROPAEA
 
Authors :  Y. Kim, C. Hatzos, S. Clancy, A. Joachimiak, Midwest Center For Stru Genomics (Mcsg)
Date :  01 Mar 07  (Deposition) - 03 Apr 07  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.65
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Alpha-Beta Structure, Structural Genomics, Psi-2, Protein Structure Initiative, Midwest Center For Structural Genomics, Mcsg, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Y. Kim, C. Hatzos, S. Clancy, A. Joachimiak
The Crystal Structure Of The Transporter Associated Domain Corc_hlyc From Nitrosomonas Europaea
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - CBS DOMAIN
    Atcc: 19718
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PMCSG7
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: CORC_HLYC DOMAIN
    Gene: NE2227
    Organism Scientific: NITROSOMONAS EUROPAEA
    Organism Taxid: 915
    Strain: IFO 14298

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 3)

Asymmetric/Biological Unit (2, 3)
No.NameCountTypeFull Name
1ACY1Ligand/IonACETIC ACID
2MSE2Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHOH A:68 , ASN A:456 , LEU A:457 , GLU A:459 , ASN B:456 , LEU B:457BINDING SITE FOR RESIDUE ACY A 201

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2P13)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2P13)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2P13)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2P13)

(-) Exons   (0, 0)

(no "Exon" information available for 2P13)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:85
 aligned with Q82SS8_NITEU | Q82SS8 from UniProtKB/TrEMBL  Length:520

    Alignment length:85
                                   440       450       460       470       480       490       500       510     
         Q82SS8_NITEU   431 EKVVAEQQADGTWLMDGWISIRKASNLLEHDLVDEAERYSTLGGYLLWQFGYIPAAGEQITVDGLIFEIVSVNKHNIGKVRVHRT 515
               SCOP domains d2p13a1 A:431-515 Uncharacterized protein NE2227                                      SCOP domains
               CATH domains 2p13A00 A:431-515  [code=3.30.465.10, no name defined]                                CATH domains
               Pfam domains ------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eee.....eeee...hhhhhhhhhh...........hhhhhhhhhhh.......eeee..eeeee.........eeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------- Transcript
                 2p13 A 431 EKVVAEQQADGTWLmDGWISIRKASNLLEHDLVDEAERYSTLGGYLLWQFGYIPAAGEQITVDGLIFEIVSVNKHNIGKVRVHRT 515
                                   440    |  450       460       470       480       490       500       510     
                                        445-MSE                                                                  


Chain B from PDB  Type:PROTEIN  Length:83
 aligned with Q82SS8_NITEU | Q82SS8 from UniProtKB/TrEMBL  Length:520

    Alignment length:85
                                   440       450       460       470       480       490       500       510     
         Q82SS8_NITEU   431 EKVVAEQQADGTWLMDGWISIRKASNLLEHDLVDEAERYSTLGGYLLWQFGYIPAAGEQITVDGLIFEIVSVNKHNIGKVRVHRT 515
               SCOP domains d2p13b_ B: Uncharacterized protei  n NE2227                                           SCOP domains
               CATH domains 2p13B00 B:431-515  [code=3.30.465  .10, no name defined]                              CATH domains
           Pfam domains (1) -----CorC_HlyC-2p13B01 B:436-515                                                      Pfam domains (1)
           Pfam domains (2) -----CorC_HlyC-2p13B02 B:436-515                                                      Pfam domains (2)
         Sec.struct. author ....eee.....eeee...hhhhhhhhhh....--.....hhhhhhhhhhh.......eeee..eeeee.........eeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------- Transcript
                 2p13 B 431 EKVVAEQQADGTWLmDGWISIRKASNLLEHDLV--AERYSTLGGYLLWQFGYIPAAGEQITVDGLIFEIVSVNKHNIGKVRVHRT 515
                                   440    |  450       460  |  | 470       480       490       500       510     
                                        445-MSE           463  |                                                 
                                                             466
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Clan: no clan defined [family: CorC_HlyC] (12)

(-) Gene Ontology  (6, 6)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B   (Q82SS8_NITEU | Q82SS8)
molecular function
    GO:0003824    catalytic activity    Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
    GO:0050660    flavin adenine dinucleotide binding    Interacting selectively and non-covalently with FAD, flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes, in either the oxidized form, FAD, or the reduced form, FADH2.
    GO:0016614    oxidoreductase activity, acting on CH-OH group of donors    Catalysis of an oxidation-reduction (redox) reaction in which a CH-OH group act as a hydrogen or electron donor and reduces a hydrogen or electron acceptor.
biological process
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
cellular component
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.

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