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(-) Description

Title :  STRUCTURAL GENOMICS, THE CRYSTAL STRUCTURE OF A PUTATIVE ABC TRANSPORTER DOMAIN FROM PORPHYROMONAS GINGIVALIS W83
 
Authors :  K. Tan, E. Duggan, J. Abdullah, A. Joachimiak, Midwest Center For St Genomics (Mcsg)
Date :  01 Mar 07  (Deposition) - 03 Apr 07  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.60
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Apc90123. 1, Putative Abc Transporter, Porphyromonas Gingivalis W83, Structural Genomics, Psi-2, Protein Structure Initiative, Midwest Center For Structural Genomics, Mcsg, Transport Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  K. Tan, E. Duggan, J. Abdullah, A. Joachimiak
The Crystal Structure Of A Putative Abc Transporter Domain From Porphyromonas Gingivalis W83
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - ABC TRANSPORTER, PERMEASE PROTEIN, PUTATIVE
    Atcc: BAA-308
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21
    Expression System Plasmid: PMCSG19
    Expression System Strain: BL21
    Expression System Taxid: 511693
    Expression System Vector Type: PLASMID
    Fragment: ONE DOMAIN
    Gene: PG_0945
    Organism Scientific: PORPHYROMONAS GINGIVALIS
    Organism Taxid: 242619
    Strain: W83

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 8)

Asymmetric/Biological Unit (4, 8)
No.NameCountTypeFull Name
1ACT1Ligand/IonACETATE ION
2FMT2Ligand/IonFORMIC ACID
3MG1Ligand/IonMAGNESIUM ION
4MSE4Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASP A:102 , HOH A:621 , HOH A:673 , HOH A:686 , HOH A:687 , HOH A:688BINDING SITE FOR RESIDUE MG A 401
2AC2SOFTWAREGLU A:70 , ASN A:124 , HIS A:125 , HIS B:125 , ARG B:128BINDING SITE FOR RESIDUE ACT A 501
3AC3SOFTWARETYR A:115 , TRP B:165 , SER B:166 , HOH B:605BINDING SITE FOR RESIDUE FMT B 601
4AC4SOFTWAREHOH A:631 , HOH A:689 , PRO B:107BINDING SITE FOR RESIDUE FMT A 602

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2P0S)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2P0S)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2P0S)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2P0S)

(-) Exons   (0, 0)

(no "Exon" information available for 2P0S)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:130
 aligned with Q7MVU4_PORGI | Q7MVU4 from UniProtKB/TrEMBL  Length:442

    Alignment length:136
                                    57        67        77        87        97       107       117       127       137       147       157       167       177      
         Q7MVU4_PORGI    48 DMKTIAIADRTGEYEQLFKENDEFRFVHAEKTAEEYRKMGADKSGIDAVLEIRQDLLEDPNAVAIYGYKQLPASVSNHISRILSDYLSDKKIASYNIPDIKQILADSKIELSVHTYKWSEDGTNERTSGELASGIS 183
               SCOP domains d2p0sa1 A:48-183 Uncharacterized protein PG0945                                                                                          SCOP domains
               CATH domains 2p0sA01 A:48-156 Periplasmic binding protein-like II                                                         --------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeee....hhhhhh.....eeee...hhhhhhhhhhhhhh..eeeee..........eeeee....hhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhh......eee...------.......... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2p0s A  48 DmKTIAIADRTGEYEQLFKENDEFRFVHAEKTAEEYRKmGADKSGIDAVLEIRQDLLEDPNAVAIYGYKQLPASVSNHISRILSDYLSDKKIASYNIPDIKQILADSKIELSVHTYKWSE------TSGELASGIS 183
                             |      57        67        77        87        97       107       117       127       137       147       157       167      |177      
                             |                                   86-MSE                                                                          167    174         
                            49-MSE                                                                                                                                  


Chain B from PDB  Type:PROTEIN  Length:122
 aligned with Q7MVU4_PORGI | Q7MVU4 from UniProtKB/TrEMBL  Length:442

    Alignment length:122
                                    57        67        77        87        97       107       117       127       137       147       157       167  
         Q7MVU4_PORGI    48 DMKTIAIADRTGEYEQLFKENDEFRFVHAEKTAEEYRKMGADKSGIDAVLEIRQDLLEDPNAVAIYGYKQLPASVSNHISRILSDYLSDKKIASYNIPDIKQILADSKIELSVHTYKWSEDG 169
               SCOP domains d2p0sb_ B: Uncharacterized protein PG0945                                                                                  SCOP domains
               CATH domains 2p0sB01 B:48-158 Periplasmic binding protein-like II                                                           ----------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeee....hhhhh.....eeeee...hhhhhhhhhhhhhh..eeeee..........eeeee....hhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhh.....eeee..... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------- Transcript
                 2p0s B  48 DmKTIAIADRTGEYEQLFKENDEFRFVHAEKTAEEYRKmGADKSGIDAVLEIRQDLLEDPNAVAIYGYKQLPASVSNHISRILSDYLSDKKIASYNIPDIKQILADSKIELSVHTYKWSEDG 169
                             |      57        67        77        87        97       107       117       127       137       147       157       167  
                            49-MSE                               86-MSE
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2P0S)

(-) Gene Ontology  (2, 2)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B   (Q7MVU4_PORGI | Q7MVU4)
cellular component
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.

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