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(-) Description

Title :  CATALYTIC DOMAIN OF THE PROTO-ONCOGENE TYROSINE-PROTEIN KINASE MER
 
Authors :  J. R. Walker, X. Huang, P. J. Finerty Jr. , J. Weigelt, M. Sundstrom, C. H. Arrowsmith, A. M. Edwards, A. Bochkarev, S. Dhe-Paganon, Struct Genomics Consortium (Sgc)
Date :  28 Feb 07  (Deposition) - 08 May 07  (Release) - 19 May 10  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.40
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Atp-Binding, Disease Mutation, Glycoprotein, Kinase, Nucleotide- Binding, Phosphorylation, Proto-Oncogene, Receptor, Retinitis Pigmentosa, Sensory Transduction, Transferase, Tyrosine-Protein Kinase, Vision, Structural Genomics, Structural Genomics Consortium, Sgc (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  X. Huang, P. Finerty, J. R. Walker, C. Butler-Cole, M. Vedadi, M. Schapira, S. A. Parker, B. E. Turk, D. A. Thompson, S. Dhe-Paganon
Structural Insights Into The Inhibited States Of The Mer Receptor Tyrosine Kinase.
J. Struct. Biol. V. 165 88 2009
PubMed-ID: 19028587  |  Reference-DOI: 10.1016/J.JSB.2008.10.003
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - PROTO-ONCOGENE TYROSINE-PROTEIN KINASE MER
    ChainsA, B
    EC Number2.7.10.1
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System Taxid562
    FragmentCATALYTIC DOMAIN
    GeneMERTK, MER
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymC-MER, RECEPTOR TYROSINE KINASE MERTK
    TissuePERIPHERAL BLOOD LEUKOCYTE

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit AB
Biological Unit 1 (1x)A 
Biological Unit 2 (1x) B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 6)

Asymmetric Unit (3, 6)
No.NameCountTypeFull Name
1ANP2Ligand/IonPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
2BME1Ligand/IonBETA-MERCAPTOETHANOL
3MG3Ligand/IonMAGNESIUM ION
Biological Unit 1 (2, 2)
No.NameCountTypeFull Name
1ANP1Ligand/IonPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
2BME1Ligand/IonBETA-MERCAPTOETHANOL
3MG-1Ligand/IonMAGNESIUM ION
Biological Unit 2 (1, 1)
No.NameCountTypeFull Name
1ANP1Ligand/IonPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
2BME-1Ligand/IonBETA-MERCAPTOETHANOL
3MG-1Ligand/IonMAGNESIUM ION

(-) Sites  (6, 6)

Asymmetric Unit (6, 6)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREANP A:1 , ASN A:728 , ASP A:741BINDING SITE FOR RESIDUE MG A 4
2AC2SOFTWAREANP B:2 , HOH B:129 , ASN B:728 , ASP B:741BINDING SITE FOR RESIDUE MG B 5
3AC3SOFTWAREGLU B:712 , ASN B:716BINDING SITE FOR RESIDUE MG B 6
4AC4SOFTWAREMG A:4 , HOH A:82 , HOH A:84 , HOH A:113 , HOH A:121 , HOH A:141 , LEU A:593 , GLY A:594 , VAL A:601 , ALA A:617 , PRO A:672 , PHE A:673 , MET A:674 , ASP A:723 , ARG A:727 , ASN A:728 , MET A:730 , ASP A:741BINDING SITE FOR RESIDUE ANP A 1
5AC5SOFTWAREMG B:5 , HOH B:51 , HOH B:66 , HOH B:83 , HOH B:129 , HOH B:156 , HOH B:163 , HOH B:170 , LEU B:593 , VAL B:601 , ALA B:617 , PRO B:672 , PHE B:673 , MET B:674 , ASP B:678 , ARG B:727 , ASP B:741BINDING SITE FOR RESIDUE ANP B 2
6AC6SOFTWARELEU A:697 , ALA A:794 , ARG A:796 , CYS A:825 , LEU A:829BINDING SITE FOR RESIDUE BME A 3

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2P0C)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1Glu A:633 -Phe A:634
2Glu B:633 -Phe B:634

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (2, 4)

Asymmetric Unit (2, 4)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_041746A708SMERTK_HUMANUnclassified  ---A/BA708S
2UniProtVAR_041747E823QMERTK_HUMANPolymorphism55924349A/BE823Q

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 1 (2, 2)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_041746A708SMERTK_HUMANUnclassified  ---AA708S
2UniProtVAR_041747E823QMERTK_HUMANPolymorphism55924349AE823Q

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 2 (2, 2)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_041746A708SMERTK_HUMANUnclassified  ---BA708S
2UniProtVAR_041747E823QMERTK_HUMANPolymorphism55924349BE823Q

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

(-) PROSITE Motifs  (2, 4)

Asymmetric Unit (2, 4)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1PROTEIN_KINASE_ATPPS00107 Protein kinases ATP-binding region signature.MERTK_HUMAN593-619
 
  2A:593-619
B:593-619
2PROTEIN_KINASE_TYRPS00109 Tyrosine protein kinases specific active-site signature.MERTK_HUMAN719-731
 
  2A:719-731
B:719-731
Biological Unit 1 (2, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1PROTEIN_KINASE_ATPPS00107 Protein kinases ATP-binding region signature.MERTK_HUMAN593-619
 
  1A:593-619
-
2PROTEIN_KINASE_TYRPS00109 Tyrosine protein kinases specific active-site signature.MERTK_HUMAN719-731
 
  1A:719-731
-
Biological Unit 2 (2, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1PROTEIN_KINASE_ATPPS00107 Protein kinases ATP-binding region signature.MERTK_HUMAN593-619
 
  1-
B:593-619
2PROTEIN_KINASE_TYRPS00109 Tyrosine protein kinases specific active-site signature.MERTK_HUMAN719-731
 
  1-
B:719-731

(-) Exons   (8, 16)

Asymmetric Unit (8, 16)
 ENSEMBLUniProtKBPDB
No.Transcript IDExonExon IDGenome LocationLengthIDLocationLengthCountLocationLength
1.1aENST000002954081aENSE00001254759chr2:112656056-112656373318MERTK_HUMAN1-21210--
1.2bENST000002954082bENSE00001254651chr2:112686697-112687117421MERTK_HUMAN21-1611410--
1.3ENST000002954083ENSE00001751676chr2:112702537-112702637101MERTK_HUMAN161-195350--
1.4ENST000002954084ENSE00001658702chr2:112704971-112705144174MERTK_HUMAN195-253590--
1.5ENST000002954085ENSE00001692438chr2:112722768-11272285487MERTK_HUMAN253-282300--
1.6ENST000002954086ENSE00001644343chr2:112725714-112725829116MERTK_HUMAN282-320390--
1.7ENST000002954087ENSE00001710837chr2:112732866-112733049184MERTK_HUMAN321-382620--
1.8aENST000002954088aENSE00001610621chr2:112740419-112740570152MERTK_HUMAN382-432510--
1.9aENST000002954089aENSE00001685624chr2:112751828-112751981154MERTK_HUMAN433-484520--
1.21cENST0000029540821cENSE00001786989chr2:112754900-112755053154MERTK_HUMAN484-535520--
1.22ENST0000029540822ENSE00001609127chr2:112758778-11275886386MERTK_HUMAN535-564300--
1.23aENST0000029540823aENSE00001786122chr2:112760669-11276076496MERTK_HUMAN564-596332A:575-595
B:575-595
21
21
1.24ENST0000029540824ENSE00001731139chr2:112761481-11276156181MERTK_HUMAN596-623282A:598-621
B:599-621
24
23
1.25aENST0000029540825aENSE00001795827chr2:112765960-11276605293MERTK_HUMAN623-654322A:633-654
B:633-654
22
22
1.29ENST0000029540829ENSE00001693586chr2:112767525-112767643119MERTK_HUMAN654-693402A:654-693 (gaps)
B:654-693 (gaps)
40
40
1.36ENST0000029540836ENSE00001789903chr2:112776990-112777099110MERTK_HUMAN694-730372A:694-730
B:694-730
37
37
1.38ENST0000029540838ENSE00001793083chr2:112778999-112779158160MERTK_HUMAN730-783542A:730-783 (gaps)
B:730-783 (gaps)
54
54
1.39cENST0000029540839cENSE00001710351chr2:112779835-112779971137MERTK_HUMAN784-829462A:784-829
B:784-829
46
46
1.45eENST0000029540845eENSE00001427300chr2:112785928-1127871381211MERTK_HUMAN829-9991712A:829-861
B:829-861
33
33

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:249
 aligned with MERTK_HUMAN | Q12866 from UniProtKB/Swiss-Prot  Length:999

    Alignment length:287
                                   584       594       604       614       624       634       644       654       664       674       684       694       704       714       724       734       744       754       764       774       784       794       804       814       824       834       844       854       
          MERTK_HUMAN   575 NKLEDVVIDRNLLILGKILGEGEFGSVMEGNLKQEDGTSLKVAVKTMKLDNSSQREIEEFLSEAACMKDFSHPNVIRLLGVCIEMSSQGIPKPMVILPFMKYGDLHTYLLYSRLETGPKHIPLQTLLKFMVDIALGMEYLSNRNFLHRDLAARNCMLRDDMTVCVADFGLSKKIYSGDYYRQGRIAKMPVKWIAIESLADRVYTSKSDVWAFGVTMWEIATRGMTPYPGVQNHEMYDYLLHGHRLKQPEDCLDELYEIMYSCWRTDPLDRPTFSVLRLQLEKLLESL 861
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 2p0cA01 A:575-673 Pho  sphorylase Kinase; domai           n 1                                      2p0cA02 A:674-859 Transferase(Phosphotransferase) domain 1                                                                                                                                -- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........hhh.eeeeeeee.--...eeeeeee.....eeeeeeee.-----------.hhhhhhhhhh..........eee.-------...eeeee.....hhhhhhhhh.........hhhhhhhhhhhhhhhhhhhhhh.......hhh.eee.....eee.....------------------hhhhhhhhhhhh...hhhhhhhhhhhhhhhhhh.........hhhhhhhhhhh..........hhhhhhhhhhh...hhhhh.hhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------S------------------------------------------------------------------------------------------------------------------Q-------------------------------------- SAPs(SNPs)
                    PROSITE ------------------PROTEIN_KINASE_ATP         ---------------------------------------------------------------------------------------------------PROTEIN_KINAS---------------------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.23a            --------------------------Exon 1.25a  PDB: A:633-654      ---------------------------------------Exon 1.36  PDB: A:694-730            -----------------------------------------------------Exon 1.39c  PDB: A:784-829 UniProt: 784-829   -------------------------------- Transcript 1 (1)
           Transcript 1 (2) ---------------------Exon 1.24  PDB: A:598-621   ------------------------------Exon 1.29  PDB: A:654-693 (gaps)        ------------------------------------Exon 1.38  PDB: A:730-783 (gaps) UniProt: 730-783     ---------------------------------------------Exon 1.45e  PDB: A:829-861        Transcript 1 (2)
                 2p0c A 575 NKLEDVVIDRNLLILGKILGE--FGSVMEGNLKQEDGTSLKVAVKTM-----------EFLSEAACMKDFSHPNVIRLLGVCI-------PKPMVILPFMKYGDLHTYLLYSRLETGPKHIPLQTLLKFMVDIALGMEYLSNRNFLHRDLAARNCMLRDDMTVCVADFGL------------------PVKWIAIESLADRVYTSKSDVWAFGVTMWEIATRGMTPYPGVQNHEMYDYLLHGHRLKQPEDCLDELYEIMYSCWRTDPLDRPTFSVLRLQLEKLLESL 861
                                   584       594|  |   604       614      |  -       634       644       654  |      -|      674       684       694       704       714       724       734       744         -       764       774       784       794       804       814       824       834       844       854       
                                              595  |                    621         633                     657     665                                                                            744                763                                                                                                  
                                                 598                                                                                                                                                                                                                                                                       

Chain B from PDB  Type:PROTEIN  Length:248
 aligned with MERTK_HUMAN | Q12866 from UniProtKB/Swiss-Prot  Length:999

    Alignment length:287
                                   584       594       604       614       624       634       644       654       664       674       684       694       704       714       724       734       744       754       764       774       784       794       804       814       824       834       844       854       
          MERTK_HUMAN   575 NKLEDVVIDRNLLILGKILGEGEFGSVMEGNLKQEDGTSLKVAVKTMKLDNSSQREIEEFLSEAACMKDFSHPNVIRLLGVCIEMSSQGIPKPMVILPFMKYGDLHTYLLYSRLETGPKHIPLQTLLKFMVDIALGMEYLSNRNFLHRDLAARNCMLRDDMTVCVADFGLSKKIYSGDYYRQGRIAKMPVKWIAIESLADRVYTSKSDVWAFGVTMWEIATRGMTPYPGVQNHEMYDYLLHGHRLKQPEDCLDELYEIMYSCWRTDPLDRPTFSVLRLQLEKLLESL 861
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 2p0cB01 B:575-673 Pho   sphorylase Kinase; doma           in 1                                     2p0cB02 B:674-859 Transferase(Phosphotransferase) domain 1                                                                                                                                -- CATH domains
           Pfam domains (1) ------------Pkinase_T   yr-2p0cB01 B:587-854                                                                                                                                                                                                                                            ------- Pfam domains (1)
           Pfam domains (2) ------------Pkinase_T   yr-2p0cB02 B:587-854                                                                                                                                                                                                                                            ------- Pfam domains (2)
         Sec.struct. author ........hhh.eeeeeeee.---.eeeeeeee.....eeeeeeee.-----------.hhhhhhhhhh..........eee.-------...eeeee.....hhhhhhhhh.........hhhhhhhhhhhhhhhhhhhhh........hhh.eee.....eee.....------------------hhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhh.........hhhhhhhhhhh..........hhhhhhhhhhh...hhhhh.hhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------S------------------------------------------------------------------------------------------------------------------Q-------------------------------------- SAPs(SNPs)
                    PROSITE ------------------PROTEIN_KINASE_ATP         ---------------------------------------------------------------------------------------------------PROTEIN_KINAS---------------------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.23a            --------------------------Exon 1.25a  PDB: B:633-654      ---------------------------------------Exon 1.36  PDB: B:694-730            -----------------------------------------------------Exon 1.39c  PDB: B:784-829 UniProt: 784-829   -------------------------------- Transcript 1 (1)
           Transcript 1 (2) ---------------------Exon 1.24  PDB: B:599-621   ------------------------------Exon 1.29  PDB: B:654-693 (gaps)        ------------------------------------Exon 1.38  PDB: B:730-783 (gaps) UniProt: 730-783     ---------------------------------------------Exon 1.45e  PDB: B:829-861        Transcript 1 (2)
                 2p0c B 575 NKLEDVVIDRNLLILGKILGE---GSVMEGNLKQEDGTSLKVAVKTM-----------EFLSEAACMKDFSHPNVIRLLGVCI-------PKPMVILPFMKYGDLHTYLLYSRLETGPKHIPLQTLLKFMVDIALGMEYLSNRNFLHRDLAARNCMLRDDMTVCVADFGL------------------PVKWIAIESLADRVYTSKSDVWAFGVTMWEIATRGMTPYPGVQNHEMYDYLLHGHRLKQPEDCLDELYEIMYSCWRTDPLDRPTFSVLRLQLEKLLESL 861
                                   584       594|   |  604       614      |  -       634       644       654  |      -|      674       684       694       704       714       724       734       744         -       764       774       784       794       804       814       824       834       844       854       
                                              595 599                   621         633                     657     665                                                                            744                763                                                                                                  

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2P0C)

(-) CATH Domains  (2, 4)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (1, 2)

Asymmetric Unit
(-)
Clan: PKinase (934)

(-) Gene Ontology  (35, 35)

Asymmetric Unit(hide GO term definitions)
Chain A,B   (MERTK_HUMAN | Q12866)
molecular function
    GO:0005524    ATP binding    Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
    GO:0016301    kinase activity    Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0004672    protein kinase activity    Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP.
    GO:0004713    protein tyrosine kinase activity    Catalysis of the reaction: ATP + a protein tyrosine = ADP + protein tyrosine phosphate.
    GO:0016740    transferase activity    Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
    GO:0004714    transmembrane receptor protein tyrosine kinase activity    Combining with a signal and transmitting the signal from one side of the membrane to the other to initiate a change in cell activity by catalysis of the reaction: ATP + a protein-L-tyrosine = ADP + a protein-L-tyrosine phosphate.
biological process
    GO:0043277    apoptotic cell clearance    The recognition and removal of an apoptotic cell by a neighboring cell or by a phagocyte.
    GO:0007166    cell surface receptor signaling pathway    A series of molecular signals initiated by activation of a receptor on the surface of a cell. The pathway begins with binding of an extracellular ligand to a cell surface receptor, or for receptors that signal in the absence of a ligand, by ligand-withdrawal or the activity of a constitutively active receptor. The pathway ends with regulation of a downstream cellular process, e.g. transcription.
    GO:0007267    cell-cell signaling    Any process that mediates the transfer of information from one cell to another. This process includes signal transduction in the receiving cell and, where applicable, release of a ligand and any processes that actively facilitate its transport and presentation to the receiving cell. Examples include signaling via soluble ligands, via cell adhesion molecules and via gap junctions.
    GO:0050900    leukocyte migration    The movement of a leukocyte within or between different tissues and organs of the body.
    GO:0001779    natural killer cell differentiation    The process in which a relatively unspecialized cell acquires the specialized features of a natural killer cell.
    GO:2000107    negative regulation of leukocyte apoptotic process    Any process that stops, prevents, or reduces the frequency, rate or extent of leukocyte apoptotic process.
    GO:0051250    negative regulation of lymphocyte activation    Any process that stops, prevents, or reduces the frequency, rate or extent of lymphocyte activation.
    GO:0018108    peptidyl-tyrosine phosphorylation    The phosphorylation of peptidyl-tyrosine to form peptidyl-O4'-phospho-L-tyrosine.
    GO:0006909    phagocytosis    An endocytosis process that results in the engulfment of external particulate material by phagocytes. The particles are initially contained within phagocytic vacuoles (phagosomes), which then fuse with primary lysosomes to effect digestion of the particles.
    GO:0016310    phosphorylation    The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide.
    GO:0030168    platelet activation    A series of progressive, overlapping events triggered by exposure of the platelets to subendothelial tissue. These events include shape change, adhesiveness, aggregation, and release reactions. When carried through to completion, these events lead to the formation of a stable hemostatic plug.
    GO:0050766    positive regulation of phagocytosis    Any process that activates or increases the frequency, rate or extent of phagocytosis.
    GO:0043491    protein kinase B signaling    A series of reactions, mediated by the intracellular serine/threonine kinase protein kinase B (also called AKT), which occurs as a result of a single trigger reaction or compound.
    GO:0006468    protein phosphorylation    The process of introducing a phosphate group on to a protein.
    GO:0060041    retina development in camera-type eye    The process whose specific outcome is the progression of the retina over time, from its formation to the mature structure. The retina is the innermost layer or coating at the back of the eyeball, which is sensitive to light and in which the optic nerve terminates.
    GO:0032940    secretion by cell    The controlled release of a substance by a cell.
    GO:0007283    spermatogenesis    The process of formation of spermatozoa, including spermatocytogenesis and spermiogenesis.
    GO:0034446    substrate adhesion-dependent cell spreading    The morphogenetic process that results in flattening of a cell as a consequence of its adhesion to a substrate.
    GO:0060068    vagina development    The reproductive developmental process whose specific outcome is the progression of the vagina over time, from its formation to the mature structure.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0005615    extracellular space    That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid.
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0005887    integral component of plasma membrane    The component of the plasma membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0001750    photoreceptor outer segment    The outer segment of a vertebrate photoreceptor that contains discs of photoreceptive membranes.
    GO:0005886    plasma membrane    The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.
    GO:0016028    rhabdomere    The specialized microvilli-containing organelle on the apical surfaces of a photoreceptor cell containing the visual pigment rhodopsin and most of the proteins involved in phototransduction.

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        MERTK_HUMAN | Q128662dbj 3bpr 3brb 3tcp 4m3q 4mh7 4mha 5k0k 5k0x 5tc0 5td2

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