2OZT - JenaLib

Title :   CRYSTAL STRUCTURE OF O-SUCCINYLBENZOATE SYNTHASE FROM THERMOSYNECHOCOCCUS ELONGATUS BP-1

Authors :   V. N. Malashkevich, J. Bonanno, R. Toro, J. M. Sauder, K. D. Schwinn, K. T J. M. Adams, C. Reyes, I. Rooney, T. Gheyi, S. R. Wasserman, S. Emtage, S. K. Burley, S. C. Almo, New York Sgx Research Center For Struct Genomics (Nysgxrc)

Date :   27 Feb 07 (Deposition) - 13 Mar 07 (Release) - 13 Aug 14 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.42

Chains :   Asym./Biol. Unit : A

Keywords :   Structural Genomics, O-Succinylbenzoate Synthase, Psi, Protein Structure Initiative, New York Structural Genomics Research Consortium, Nysgrc, New York Sgx Research Center For Structural Genomics, Nysgxrc, Lyase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   D. Odokonyero, A. Sakai, Y. Patskovsky, V. N. Malashkevich, A. A. Fedorov, J. B. Bonanno, E. V. Fedorov, R. Toro, R. Agarwal, C. Wang N. D. Ozerova, W. S. Yew, J. M. Sauder, S. Swaminathan, S. K. Burley, S. C. Almo, M. E. Glasner
Loss Of Quaternary Structure Is Associated With Rapid Sequence Divergence In The Osbs Family.
Proc. Natl. Acad. Sci. Usa V. 111 8535 2014
PubMed-ID: 24872444 | Reference-DOI: 10.1073/PNAS.1318703111

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (3, 5)

Sites (3, 3)

SS Bonds (0, 0)

Cis Peptide Bonds (1, 1)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:321
 aligned with Q8DJP8_THEEB | Q8DJP8 from UniProtKB/TrEMBL  Length:322

    Alignment length:321
                             1                                                                                                                                                                                                                                                                                                                               
                             |       9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319 
         Q8DJP8_THEEB     - -MRWQWRIYEEPLQEPLTTAQGVWRSRSGIYLRLEDEQGQVGYGEIAPLPGWGSETLNADIALCQQLPGHLTPEIMATIPEALPAAQFGFATAWQSVGRLPYRVRPWPICALLGSGQAALEQWQQSWQRGQTTFKWKVGVMSPEEEQAILKALLAALPPGAKLRLDANGSWDRATANRWFAWLDRHGNGKIEYVEQPLPPDQWQALLSLAQTVTTAIALDESVVSAAEVQRWVDRGWPGFFVIKTALFGDPDSLSLLLRRGLEPQRLVFSSALEGAIARTAIFHLLETWQPCHALGFGVDRWRSAPLLTTLTAYERLWERL 320
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 2oztA01 A:0-103,A:307-320 Enolase-like, N-terminal domain                                               2oztA02 A:104-306 Enolase superfamily                                                                                                                                                                      2oztA01        CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------MR_MLE-2oztA01 A:148-219                                                ----------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeeeeeeeeeeeee..eeeeeeeeeeeeee.....eeeeee.........hhhhhhhhhhhh..eehhhhhh.....hhhhhhhhhhhhhhh.............eee.hhhhhhhhhhhhhhh...eeeee....hhhhhhhhhhhhhhhh....eeeee.....hhhhhhhhhhhhhhhh...eeeee......hhhhhhhhhhhh...eee.....hhhhhhhhhhh....eeeehhhhhhhhhhhhhhhhh..hhh.eee.....hhhhhhhhhhhhhhhh...................hhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2ozt A   0 SLRWQWRIYEEPLQEPLTTAQGVWRSRSGIYLRLEDEQGQVGYGEIAPLPGWGSETLNADIALCQQLPGHLTPEImATIPEALPAAQFGFATAWQSVGRLPYRVRPWPICALLGSGQAALEQWQQSWQRGQTTFKWKVGVmSPEEEQAILKALLAALPPGAKLRLDANGSWDRATANRWFAWLDRHGNGKIEYVEQPLPPDQWQALLSLAQTVTTAIALDESVVSAAEVQRWVDRGWPGFFVIKTALFGDPDSLSLLLRRGLEPQRLVFSSALEGAIARTAIFHLLETWQPCHALGFGVDRWRSAPLLTTLTAYERLWERL 320
                                     9        19        29        39        49        59        69     |  79        89        99       109       119       129       139|      149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319 
                                                                                                      75-MSE                                                          140-MSE

Legend:		→ Mismatch	(orange background)
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	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (2, 2)

Pfam Domains (1, 1)

Gene Ontology (8, 8)

Asymmetric/Biological Unit(hide GO term definitions)

Chain A (Q8DJP8_THEEB | Q8DJP8)

molecular function
	GO:0003824	catalytic activity	Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
	GO:0016836	hydro-lyase activity	Catalysis of the cleavage of a carbon-oxygen bond by elimination of water.
	GO:0016829	lyase activity	Catalysis of the cleavage of C-C, C-O, C-N and other bonds by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond. They differ from other enzymes in that two substrates are involved in one reaction direction, but only one in the other direction. When acting on the single substrate, a molecule is eliminated and this generates either a new double bond or a new ring.
	GO:0000287	magnesium ion binding	Interacting selectively and non-covalently with magnesium (Mg) ions.
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
biological process
	GO:0009234	menaquinone biosynthetic process	The chemical reactions and pathways resulting in the formation of any of the menaquinones. Structurally, menaquinones consist of a methylated naphthoquinone ring structure and side chains composed of a variable number of unsaturated isoprenoid residues. Menaquinones that have vitamin K activity and are known as vitamin K2.
	GO:0008152	metabolic process	The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
	GO:0042372	phylloquinone biosynthetic process	The chemical reactions and pathways resulting in the formation of phylloquinone, vitamin K1, a quinone-derived compound synthesized by green plants.

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