Show PDB file:   
         Plain Text   HTML   (compressed file size)
QuickSearch:   
by PDB,NDB,UniProt,PROSITE Code or Search Term(s)  
(-)Biol.Unit 1 - manually
(-)Asymmetric Unit
(-)Asym. Unit - sites
(-)Biological Unit 1
(-)Biol. Unit 1 - sites
(-)Biological Unit 2
collapse expand < >
Image Biol.Unit 1 - manually
Biol.Unit 1 - manually  (Jmol Viewer)
Image Asymmetric Unit
Asymmetric Unit  (Jmol Viewer)
Image Asym. Unit - sites
Asym. Unit - sites  (Jmol Viewer)
Image Biological Unit 1
Biological Unit 1  (Jmol Viewer)
Image Biol. Unit 1 - sites
Biol. Unit 1 - sites  (Jmol Viewer)
Image Biological Unit 2
Biological Unit 2  (Jmol Viewer)

(-) Description

Title :  CRYSTAL STRUCTURE OF GCN5-RELATED N-ACETYLTRANSFERASE (YP_325469.1) FROM ANABAENA VARIABILIS ATCC 29413 AT 2.00 A RESOLUTION
 
Authors :  Joint Center For Structural Genomics (Jcsg)
Date :  26 Feb 07  (Deposition) - 13 Mar 07  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (6x)
Biol. Unit 2:  A  (2x)
Keywords :  Yp_325469. 1, Gcn5-Related N-Acetyltransferase, Acetyltransferase (Gnat) Family, Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi-2, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of Gcn5-Related N-Acetyltransferase (Yp_325469. 1) From Anabaena Variabilis Atcc 29413 At 2. 00 A Resolution
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - GCN5-RELATED N-ACETYLTRANSFERASE
    Atcc: 29413
    Chains: A
    EC Number: 2.3.1.-
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: SPEEDET
    Expression System Strain: HK100
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: YP_325469.1, AVA_4977
    Organism Scientific: ANABAENA VARIABILIS
    Organism Taxid: 1172
    Strain: PCC 7937

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (6x): A
Biological Unit 2 (2x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 11)

Asymmetric Unit (4, 11)
No.NameCountTypeFull Name
1ACT1Ligand/IonACETATE ION
2COA1Ligand/IonCOENZYME A
3MSE5Mod. Amino AcidSELENOMETHIONINE
4PEG4Ligand/IonDI(HYDROXYETHYL)ETHER
Biological Unit 1 (4, 66)
No.NameCountTypeFull Name
1ACT6Ligand/IonACETATE ION
2COA6Ligand/IonCOENZYME A
3MSE30Mod. Amino AcidSELENOMETHIONINE
4PEG24Ligand/IonDI(HYDROXYETHYL)ETHER
Biological Unit 2 (4, 22)
No.NameCountTypeFull Name
1ACT2Ligand/IonACETATE ION
2COA2Ligand/IonCOENZYME A
3MSE10Mod. Amino AcidSELENOMETHIONINE
4PEG8Ligand/IonDI(HYDROXYETHYL)ETHER

(-) Sites  (6, 6)

Asymmetric Unit (6, 6)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREMSE A:67 , ARG A:75 , HOH A:692BINDING SITE FOR RESIDUE ACT A 396
2AC2SOFTWAREVAL A:84 , GLY A:85 , ILE A:86 , ARG A:91 , GLY A:92 , ASP A:93 , GLY A:94 , ALA A:95 , ALA A:96 , ILE A:97 , TYR A:118 , ALA A:120 , THR A:121 , ARG A:123 , LEU A:124 , TYR A:125 , LYS A:127 , ARG A:252 , SER A:253 , GLN A:254 , HOH A:569 , HOH A:584 , HOH A:626 , HOH A:675 , HOH A:705 , HOH A:729 , HOH A:732 , HOH A:746BINDING SITE FOR RESIDUE COA A 500
3AC3SOFTWAREGLY A:72 , HIS A:178 , TYR A:301 , PRO A:302 , GLY A:386 , GLU A:387 , HOH A:597BINDING SITE FOR RESIDUE PEG A 501
4AC4SOFTWAREGLN A:74 , GLU A:297 , ARG A:299 , GLY A:332 , LYS A:333 , SER A:334 , HOH A:540BINDING SITE FOR RESIDUE PEG A 502
5AC5SOFTWARELEU A:160 , LYS A:161 , ASN A:162 , HIS A:167BINDING SITE FOR RESIDUE PEG A 503
6AC6SOFTWARESER A:328 , ALA A:330 , LYS A:333 , GLU A:335 , HOH A:706BINDING SITE FOR RESIDUE PEG A 504

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2OZG)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2OZG)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2OZG)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2OZG)

(-) Exons   (0, 0)

(no "Exon" information available for 2OZG)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:388
 aligned with Q3M362_ANAVT | Q3M362 from UniProtKB/TrEMBL  Length:395

    Alignment length:388
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387        
         Q3M362_ANAVT     8 RFKYTKASQENIQQLGNILEQCFVMSFGDSEIYVKGIGLENFRVIYREQKVAGGLAILPMGQWWGGQRVPMAGIAAVGIAPEYRGDGAAIALIQHTLQEISEQDIPISVLYPATQRLYRKAGYEQAGSSCVWEIPTDSIQIQHASLPLEPVVLKNNPIFHELYQQQAQLTHGYLDRHPAIWQGLNRTLDTETLYSYLIGDKDKPQGYIIFTQERTRDGSILRIRDWVTLSNPAVQSFWTFIANHRSQIDKVTWKSSVIDALTLLLPEQSATIRSQDRWMLRIVNVCKALEARGYPLGVEAELHLEVQDDLLATNQGKFILSVANGKSEVTKGGKGELQLDIKGLASLYTSLFTPRQLQLTGKLQATETALLKATQIFAGESPWMIDFF 395
               SCOP domains d2ozga2 A:8-290 Putative acetyltransferase Ava4977                                                                                                                                                                                                                                         d2ozga1 A:291-395 Putative acetyltransferase Ava4977                                                      SCOP domains
               CATH domains 2ozgA01 A:8-68,A:77-131,A:288-291                            2ozgA02 2ozgA01 A:8-68,A:77-131,A:288-291                      2ozgA02 A:69-76,A:132-287  [code=3.40.630.30, no name defined]                                                                                              2ozg2ozgA03 A:292-385 Nonspecific Lipid-transfer Protein; Chain A                                 ---------- CATH domains
               Pfam domains --Acetyltransf_9-2ozgA01 A:10-133                                                                                             ------------------------------------------SCP2_2-2ozgA02 A:176-393                                                                                                                                                                                                  -- Pfam domains
         Sec.struct. author .eeeee....hhhhhhhhhhhhh....hhhhhhhhhhh...eeeeee..eeeeeeeeeeeeeee..eeeeeeeeeeeee.hhhh..hhhhhhhhhhhhhhhhh...eeee...hhhhhhhh..eeeeeeeeeeee.hhh........eee.....hhhhhhhhhhhhhhh...ee.hhhhhhhhh........eeeeeee..eeeeeeeeeeee....eeeeeeeeee.hhhhhhhhhhhhhh......eeeeee....hhhhhh.....eeeeeeeeeeee.hhhhhhhhh.......eeeeeeee...hhhhheeeeeeee..eeeeee.....eeeehhhhhhhhh...hhhhhhhh..eeehhhhhhhhhhhhh.......... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2ozg A   8 RFKYTKASQENIQQLGNILEQCFVmSFGDSEIYVKGIGLENFRVIYREQKVAGGLAILPmGQWWGGQRVPmAGIAAVGIAPEYRGDGAAIALIQHTLQEISEQDIPISVLYPATQRLYRKAGYEQAGSSCVWEIPTDSIQIQHASLPLEPVVLKNNPIFHELYQQQAQLTHGYLDRHPAIWQGLNRTLDTETLYSYLIGDKDKPQGYIIFTQERTRDGSILRIRDWVTLSNPAVQSFWTFIANHRSQIDKVTWKSSVIDALTLLLPEQSATIRSQDRWmLRIVNVCKALEARGYPLGVEAELHLEVQDDLLATNQGKFILSVANGKSEVTKGGKGELQLDIKGLASLYTSLFTPRQLQLTGKLQATETALLKATQIFAGESPWmIDFF 395
                                    17        27    |   37        47        57        67        77|       87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387   |    
                                                   32-MSE                             67-MSE     78-MSE                                                                                                                                                                                                         286-MSE                                                                                                  391-MSE
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 2)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (2, 3)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (2, 2)

Asymmetric Unit
(-)
Clan: Acetyltrans (109)
(-)
Clan: no clan defined [family: SCP2_2] (2)

(-) Gene Ontology  (2, 2)

Asymmetric Unit(hide GO term definitions)
Chain A   (Q3M362_ANAVT | Q3M362)
molecular function
    GO:0008080    N-acetyltransferase activity    Catalysis of the transfer of an acetyl group to a nitrogen atom on the acceptor molecule.
    GO:0016740    transferase activity    Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.

 Visualization

(-) Interactive Views

Asymmetric Unit
  Complete Structure
    Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
    WebMol | AstexViewer[tm]@PDBe
(Java Applets, require no local installation except for Java; loading may be slow)
    STRAP
(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    RasMol
(require local installation)
    Molscript (VRML)
(requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)
 
  Ligands, Modified Residues, Ions
    ACT  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    COA  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    MSE  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    PEG  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
 
  Sites
    AC1  [ RasMol ]  +environment [ RasMol ]
    AC2  [ RasMol ]  +environment [ RasMol ]
    AC3  [ RasMol ]  +environment [ RasMol ]
    AC4  [ RasMol ]  +environment [ RasMol ]
    AC5  [ RasMol ]  +environment [ RasMol ]
    AC6  [ RasMol ]  +environment [ RasMol ]
 
  Cis Peptide Bonds
(no "Cis Peptide Bonds" information available for 2ozg)
 
Biological Units
  Complete Structure
    Biological Unit 1  [ Jena3D ]
    Biological Unit 2  [ Jena3D ]

(-) Still Images

Jmol
  protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick
[ Asym. Unit PNG format | Asym. Unit - sites PNG format | Biol. Unit 1 PNG format | Biol. Unit 1 - sites PNG format | Biol. Unit 2 PNG format ](automatic orientation, automatically generated)
Molscript
  protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick
[ mono PDF format | stereo PDF format ](default orientation, automatically generated)

 Databases and Analysis Tools

(-) Databases

Access by PDB/NDB ID
  2ozg
    Family and Domain Information: ProDom | SYSTERS
    General Structural Information: GlycoscienceDB | MMDB | NDB | OCA | PDB | PDBe | PDBj | PDBsum | PDBWiki | PQS | PROTEOPEDIA
    Orientation in Membranes: OPM
    Protein Surface: SURFACE
    Secondary Structure: DSSP (structure derived) | HSSP (homology derived)
    Structural Genomics: GeneCensus
    Structural Neighbours: CE | VAST
    Structure Classification: CATH | Dali | SCOP
    Validation and Original Data: BMRB Data View | BMRB Restraints Grid | EDS | PROCHECK | RECOORD | WHAT_CHECK
 
Access by UniProt ID/Accession number
  Q3M362_ANAVT | Q3M362
    Comparative Protein Structure Models: ModBase
    Genomic Information: Ensembl
    Protein-protein Interaction: DIP
    Sequence, Family and Domain Information: InterPro | Pfam | SMART | UniProtKB/TrEMBL
 
Access by Enzyme Classificator   (EC Number)
  2.3.1.-
    General Enzyme Information: BRENDA | EC-PDB | Enzyme | IntEnz
    Pathway: KEGG | MetaCyc
 
Access by Disease Identifier   (MIM ID)
  (no 'MIM ID' available)
    Disease Information: OMIM
 
Access by GenAge ID
  (no 'GenAge ID' available)
    Age Related Information: GenAge

(-) Analysis Tools

Access by PDB/NDB ID
    Domain Information: XDom
    Interatomic Contacts of Structural Units: CSU
    Ligand-protein Contacts: LPC
    Protein Cavities: castP
    Sequence and Secondary Structure: PDBCartoon
    Structure Alignment: STRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    Structure and Sequence Browser: STING
 
Access by UniProt ID/Accession number
  Q3M362_ANAVT | Q3M362
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)

 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

(no "Entries Sharing at Least One Protein Chain" available for 2OZG)

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 2OZG)