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(-) Description

Title :  THE CRYSTAL STRUCTURE OF DELTA PROTEIN OF PSM19035 FROM STREPTOCCOCUS PYOGENES
 
Authors :  A. Cicek, W. Weihofen, W. Saenger
Date :  26 Feb 07  (Deposition) - 11 Mar 08  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.83
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (2x)
Keywords :  Para, Walker Type Atpases, Dna Segregation, Psm19035, Plasmid, Dna Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  F. Pratto, A. Cicek, W. A. Weihofen, R. Lurz, W. Saenger, J. C. Alonso
Streptococcus Pyogenes Psm19035 Requires Dynamic Assembly Of Atp-Bound Para And Parb On Pars Dna During Plasmid Segregation.
Nucleic Acids Res. V. 36 3676 2008
PubMed-ID: 18477635  |  Reference-DOI: 10.1093/NAR/GKN170
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - ORF DELTA'
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PT7
    Expression System Strain: ER2566
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: DELTA
    Organism Scientific: STREPTOCOCCUS PYOGENES
    Organism Taxid: 1314
    Synonym: PUTATIVE UNCHARACTERIZED PROTEIN DELTA, ORF DELTA

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (2x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 3)

Asymmetric Unit (3, 3)
No.NameCountTypeFull Name
1AGS1Ligand/IonPHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER
2EPE1Ligand/Ion4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
3MG1Ligand/IonMAGNESIUM ION
Biological Unit 1 (2, 4)
No.NameCountTypeFull Name
1AGS2Ligand/IonPHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER
2EPE2Ligand/Ion4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
3MG-1Ligand/IonMAGNESIUM ION

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWARESER A:51 , HOH A:386 , HOH A:553BINDING SITE FOR RESIDUE MG A 299
2AC2SOFTWARELYS A:45 , GLY A:46 , GLY A:47 , GLY A:49 , LYS A:50 , SER A:51 , LYS A:52 , PRO A:164 , TYR A:220 , ILE A:251 , LYS A:252 , ARG A:253 , SER A:254 , SER A:261 , TYR A:279 , HOH A:330 , HOH A:348 , HOH A:386 , HOH A:396 , HOH A:400 , HOH A:424 , HOH A:468 , HOH A:482 , HOH A:553 , HOH A:554BINDING SITE FOR RESIDUE AGS A 300
3AC3SOFTWARESER A:134 , TRP A:135 , THR A:136 , ASN A:139 , HOH A:555BINDING SITE FOR RESIDUE EPE A 301

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2OZE)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2OZE)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:284
 aligned with Q57280_STRPY | Q57280 from UniProtKB/TrEMBL  Length:298

    Alignment length:284
                                    24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294    
         Q57280_STRPY    15 MEKEELKILEELRRILSNKNEAIVILNNYFKGGVGKSKLSTMFAYLTDKLNLKVLMIDKDLQATLTKDLAKTFKVELPRVNFYEGLKNGNLASSIVHLTDNLDLIPGTFDLMLLPKLTRSWTFENESRLLATLLAPLKSDYDLIIIDTVPTPSVYTNNAIVASDYVMIPLQAEEESTNNIQNYISYLIDLQEQFNPGLDMIGFVPYLVDTDSATIKSNLEELYKQHKEDNLVFQNIIKRSNKVSTWSKNGITEHKGYDKKVLSMYKNVFFEMLERIIQLENEKE 298
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------CbiA-2ozeA01 A:37-259                                                                                                                                                                                                          --------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhh..eeeee.......hhhhhhhhhhhhhhhh...eeeeee...hhhhhhhh..........hhhhhhhhh.hhhhhee....eeee..hhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhh.eeeeee....hhhhhhhhhhh.eeeeeehhhhhhhhhhhhhhhhhhhhhhhhh...eeeeeeeee....hhhhhhhhhhhhhhh..........ee.hhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2oze A  15 MEKEELKILEELRRILSNKNEAIVILNNYFKGGVGKSKLSTMFAYLTDKLNLKVLMIDKDLQATLTKDLAKTFKVELPRVNFYEGLKNGNLASSIVHLTDNLDLIPGTFDLMLLPKLTRSWTFENESRLLATLLAPLKSDYDLIIIDTVPTPSVYTNNAIVASDYVMIPLQAEEESTNNIQNYISYLIDLQEQFNPGLDMIGFVPYLVDTDSATIKSNLEELYKQHKEDNLVFQNIIKRSNKVSTWSKNGITEHKGYDKKVLSMYKNVFFEMLERIIQLENEKE 298
                                    24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2OZE)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2OZE)

(-) Pfam Domains  (1, 1)

Asymmetric Unit
(-)
Clan: P-loop_NTPase (1112)

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