2OX7 - JenaLib

Asym./Biol. Unit (Jmol Viewer)

Title :   CRYSTAL STRUCTURE OF PROTEIN EF1440 FROM ENTEROCOCCUS FAECALIS

Authors :   V. N. Malashkevich, R. Toro, J. M. Sauder, K. D. Schwinn, D. A. Thompson, J. M. Adams, C. Reyes, C. Lau, J. Gilmore, I. Rooney, T. Gheyi, S. R. Wass S. Emtage, S. K. Burley, S. C. Almo, New York Sgx Research Center F Structural Genomics (Nysgxrc)

Date :   19 Feb 07 (Deposition) - 06 Mar 07 (Release) - 13 Jul 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.78

Chains :   Asym./Biol. Unit : A,B,C,D

Keywords :   Structural Genomics, Hypothetical Protein, Psi, Protein Structure Initiative, New York Structural Genomics Research Consortium, Nysgrc, New York Sgx Research Center For Structural Genomics, Nysgxrc, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   V. N. Malashkevich, R. Toro, J. M. Sauder, D. A. Thompson, K. T. Bain, J. M. Adams, T. Gheyi, C. Lau, J. Gilmore, S. R. Wasserman, K. D. Schwinn S. Emtage, S. K. Burley, S. C. Almo
Crystal Structure Of The Hypothetical Protein From Enterococcus Faecalis
To Be Published
PubMed: search

Molecule 1 - HYPOTHETICAL PROTEIN
	Atcc	:	700802
	Chains	:	A, B, C, D
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	BC-PSGX3(BC)
	Expression System Strain	:	BL21(DE3)CODON+RIL
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Gene	:	EF_1440
	Organism Scientific	:	ENTEROCOCCUS FAECALIS
	Organism Taxid	:	226185
	Strain	:	V583

		1	2	3	4
Asymmetric/Biological Unit	:	A	B	C	D

Summary Information (see also Sequences/Alignments below)

Asymmetric/Biological Unit (1, 16)

No.	Name	Count	Type	Full Name
1	MSE	16	Mod. Amino Acid	SELENOMETHIONINE

(no "Site" information available for 2OX7)

(no "SS Bond" information available for 2OX7)

Asymmetric/Biological Unit

No.	Residues
1	Ser C:43	-	Pro C:44
2	Gly C:45	-	Thr C:46
3	Ser D:43	-	Pro D:44

(no "SAP(SNP)/Variant" information available for 2OX7)

(no "PROSITE Motif" information available for 2OX7)

(no "Exon" information available for 2OX7)

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:144
 aligned with Q835D7_ENTFA | Q835D7 from UniProtKB/TrEMBL  Length:145

    Alignment length:144
                             1                                                                                                                                              
                             |       9        19        29        39        49        59        69        79        89        99       109       119       129       139    
         Q835D7_ENTFA     - -MIPKFRAWDTYEKEMLENVTPLFDDSNSMIAIITDFQIKGSPGTSEIEIGSYDTTFNWDEFPYVIMQSTGLKDKNGVEIFEGDILVYDAPKKYAHRRSMHEIAYADGRFFWEFLDLVFCQSNILYRDGYLVIGNIHENPELLE 143
               SCOP domains -d2ox7a1 A:3-145 Hypothetical protein EF1440                                                                                                     SCOP domains
               CATH domains ----2ox7A01 A:6-67 YopX-like domains                              -2ox7A02 A:69-137 YopX-like domains                                   -------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .....eeeee....eeeeeeeeee.....eeeee..eeeeee..eeeeee..eee.hhh....eeeeeeeeee.....eee..eeeee...........eeeeeee..eeee.......hhhhhhh...eeeeee......... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2ox7 A   2 SLIPKFRAWDTYEKEmLENVTPLFDDSNSmIAIITDFQIKGSPGTSEIEIGSYDTTFNWDEFPYVImQSTGLKDKNGVEIFEGDILVYDAPKKYAHRRSmHEIAYADGRFFWEFLDLVFCQSNILYRDGYLVIGNIHENPELLE 145
                                    11     |  21        31        41        51        61      | 71        81        91       101       111       121       131       141    
                                          17-MSE        31-MSE                               68-MSE                          101-MSE

Chain B from PDB  Type:PROTEIN  Length:144
 aligned with Q835D7_ENTFA | Q835D7 from UniProtKB/TrEMBL  Length:145

    Alignment length:144
                             1                                                                                                                                              
                             |       9        19        29        39        49        59        69        79        89        99       109       119       129       139    
         Q835D7_ENTFA     - -MIPKFRAWDTYEKEMLENVTPLFDDSNSMIAIITDFQIKGSPGTSEIEIGSYDTTFNWDEFPYVIMQSTGLKDKNGVEIFEGDILVYDAPKKYAHRRSMHEIAYADGRFFWEFLDLVFCQSNILYRDGYLVIGNIHENPELLE 143
               SCOP domains d2ox7b_ B: Hypothetical protein EF1440                                                                                                           SCOP domains
               CATH domains ----2ox7B01 B:6-67 YopX-like domains                              -2ox7B02 B:69-137 YopX-like domains                                   -------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .....eeeee....eeeeeeeeee.....eeeeeeeeeeeee..eeeeeeeeeee.hhh....eeeeeeeeee.....eee..eeeee............eeeeee..eeee.......hhhhhhh...eeeeee...hhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2ox7 B   2 SLIPKFRAWDTYEKEmLENVTPLFDDSNSmIAIITDFQIKGSPGTSEIEIGSYDTTFNWDEFPYVImQSTGLKDKNGVEIFEGDILVYDAPKKYAHRRSmHEIAYADGRFFWEFLDLVFCQSNILYRDGYLVIGNIHENPELLE 145
                                    11     |  21        31        41        51        61      | 71        81        91       101       111       121       131       141    
                                          17-MSE        31-MSE                               68-MSE                          101-MSE

Chain C from PDB  Type:PROTEIN  Length:143
 aligned with Q835D7_ENTFA | Q835D7 from UniProtKB/TrEMBL  Length:145

    Alignment length:143
                             1                                                                                                                                             
                             |       9        19        29        39        49        59        69        79        89        99       109       119       129       139   
         Q835D7_ENTFA     - -MIPKFRAWDTYEKEMLENVTPLFDDSNSMIAIITDFQIKGSPGTSEIEIGSYDTTFNWDEFPYVIMQSTGLKDKNGVEIFEGDILVYDAPKKYAHRRSMHEIAYADGRFFWEFLDLVFCQSNILYRDGYLVIGNIHENPELL 142
               SCOP domains d2ox7c_ C: Hypothetical protein EF1440                                                                                                          SCOP domains
               CATH domains ----2ox7C01 C:6-67 YopX-like domains                              -2ox7C02 C:69-137 YopX-like domains                                   ------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeee....eeeeeeeeee.....eeeeeeeeeee......eeeeeeeee.hhh....eeeeeeeeee.....eee..eeeee............eeeeee..eeee.......hhhhhhh...eeeeee........ Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2ox7 C   2 SLIPKFRAWDTYEKEmLENVTPLFDDSNSmIAIITDFQIKGSPGTSEIEIGSYDTTFNWDEFPYVImQSTGLKDKNGVEIFEGDILVYDAPKKYAHRRSmHEIAYADGRFFWEFLDLVFCQSNILYRDGYLVIGNIHENPELL 144
                                    11     |  21        31        41        51        61      | 71        81        91       101       111       121       131       141   
                                          17-MSE        31-MSE                               68-MSE                          101-MSE

Chain D from PDB  Type:PROTEIN  Length:143
 aligned with Q835D7_ENTFA | Q835D7 from UniProtKB/TrEMBL  Length:145

    Alignment length:143
                             1                                                                                                                                             
                             |       9        19        29        39        49        59        69        79        89        99       109       119       129       139   
         Q835D7_ENTFA     - -MIPKFRAWDTYEKEMLENVTPLFDDSNSMIAIITDFQIKGSPGTSEIEIGSYDTTFNWDEFPYVIMQSTGLKDKNGVEIFEGDILVYDAPKKYAHRRSMHEIAYADGRFFWEFLDLVFCQSNILYRDGYLVIGNIHENPELL 142
               SCOP domains d2ox7d_ D: Hypothetical protein EF1440                                                                                                          SCOP domains
               CATH domains ----2ox7D01 D:6-67 YopX-like domains                              -2ox7D02 D:69-137 YopX-like domains                                   ------- CATH domains
           Pfam domains (1) ----YopX-2ox7D01 D:6-144                                                                                                                        Pfam domains (1)
           Pfam domains (2) ----YopX-2ox7D02 D:6-144                                                                                                                        Pfam domains (2)
           Pfam domains (3) ----YopX-2ox7D03 D:6-144                                                                                                                        Pfam domains (3)
           Pfam domains (4) ----YopX-2ox7D04 D:6-144                                                                                                                        Pfam domains (4)
         Sec.struct. author .....eeeee....eeeeeeeeee.....eeeeeeeeee........eeeeeeee.hhh....eeeeeeeeee.....eee..eeeee...........eeeeeee..eeee.......hhhhhhh...eeeeee........ Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2ox7 D   2 SLIPKFRAWDTYEKEmLENVTPLFDDSNSmIAIITDFQIKGSPGTSEIEIGSYDTTFNWDEFPYVImQSTGLKDKNGVEIFEGDILVYDAPKKYAHRRSmHEIAYADGRFFWEFLDLVFCQSNILYRDGYLVIGNIHENPELL 144
                                    11     |  21        31        41        51        61      | 71        81        91       101       111       121       131       141   
                                          17-MSE        31-MSE                               68-MSE                          101-MSE

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric/Biological Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: All beta proteins (24004)

Fold: YopX-like (4)

Superfamily: YopX-like (4)

Family: YopX-like (3)

Protein domain: Hypothetical protein EF1440 (1)

Enterococcus faecalis [TaxId: 1351] (1)

1a	d2ox7a1	A:3-145
1b	d2ox7b_	B:
1c	d2ox7c_	C:
1d	d2ox7d_	D:

Asymmetric/Biological Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Mainly Beta (13760)

Architecture: Roll (1513)

Topology: SH3 type barrels. (648)

Homologous Superfamily: YopX-like domains (3)

Enterococcus faecalis v583. Organism_taxid: 226185. Strain: v583. (1)

1a	2ox7A02	A:69-137
1b	2ox7B02	B:69-137
1c	2ox7C02	C:69-137
1d	2ox7D02	D:69-137

Homologous Superfamily: YopX-like domains (1)

Enterococcus faecalis v583. Organism_taxid: 226185. Strain: v583. (1)

2a	2ox7A01	A:6-67
2b	2ox7B01	B:6-67
2c	2ox7C01	C:6-67
2d	2ox7D01	D:6-67

Asymmetric/Biological Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: no clan defined [family: YopX] (2)

Family: YopX (2)

Enterococcus faecalis (Streptococcus faecalis) (1)

1a	YopX-2ox7D01	D:6-144
1b	YopX-2ox7D02	D:6-144
1c	YopX-2ox7D03	D:6-144
1d	YopX-2ox7D04	D:6-144

Asymmetric/Biological Unit(hide GO term definitions)

(no "Gene Ontology" information available for 2OX7)

Asymmetric/Biological Unit
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	Cis Peptide Bonds
		Gly C:45 - Thr C:46	[ RasMol ]
		Ser C:43 - Pro C:44	[ RasMol ]
		Ser D:43 - Pro D:44	[ RasMol ]

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Description

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Chains, Units

Ligands, Modified Residues, Ions (1, 16)

Sites (0, 0)

SS Bonds (0, 0)

Cis Peptide Bonds (3, 3)

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