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(-) Description

Title :  SOLUTION STRUCTURE OF HI1506, A NOVEL TWO DOMAIN PROTEIN FROM HAEMOPHILUS INFLUENZAE
 
Authors :  N. Sari, Y. He, V. Doseeva, K. Surabian, F. Schwarz, O. Herzberg, J. Orban, Structure 2 Function Project (S2F)
Date :  12 Feb 07  (Deposition) - 01 May 07  (Release) - 24 Feb 09  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (20x)
Keywords :  Structural Genomics, Nmr, Haemophilus Influenzae, Hypothetical Protein, Structure 2 Function Project, S2F, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  N. Sari, Y. He, V. Doseeva, K. Surabian, J. Ramprakash, F. Schwarz, O. Herzberg, J. Orban
Solution Structure Of Hi1506, A Novel Two-Domain Protein From Haemophilus Influenzae.
Protein Sci. V. 16 977 2007
PubMed-ID: 17400915  |  Reference-DOI: 10.1110/PS.072820907
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - MU-LIKE PROPHAGE FLUMU PROTEIN GP35, PROTEIN HI1507 IN MU-LIKE PROPHAGE FLUMU REGION
    Atcc: 51907, 51907
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET 100/D-TOPO
    Expression System Strain: BL21 STAR DE3
    Expression System Taxid: 562
    Expression System Vector Type: RECOMBINANT AMPICILLIN- RESISTANT PLASMID
    Gene: HI1506, HI1507
    Organism Scientific: HAEMOPHILUS INFLUENZAE
    Organism Taxid: 727
    Strain: DSM 11121, KW20, RD

 Structural Features

(-) Chains, Units

  
NMR Structure (20x): 

Summary Information (see also Sequences/Alignments below)

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(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:131
 aligned with VG35_HAEIN | P44228 from UniProtKB/Swiss-Prot  Length:128

    Alignment length:131
                               1                                                                                                                               
                               |     7        17        27        37        47        57        67        77        87        97       107       117       127 
           VG35_HAEIN     - ---MDKTFCVVVQNRIKEGYRRAGFSFHLGDNSLAAVSESQLAQLKADPRLVVQITETGSQEGGEGLSKEPAGSDEQKQLRADPPSTDLNTFTVEQLKAQLTERGITFKQSATKAELIALFAPADGEKSEA 128
               SCOP domains ---d2outa2 A:4-70 Mu-like prophage FluMu protein gp35, HI1506         -----------------------d2outa1 A:94-131                       SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------HeH-2outA01 A:89-122              --------- Pfam domains
         Sec.struct. author .........eeee.................eee.....hhhhhhhhh......ee......................................hhhhhhhhhhhh........hhhhhhhh.......... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2out A   1 GSHMDKTFCVVVQNRIKEGYRRAGFSFHLGDNSLAAVSESQLAQLKADPRLVVQITETGSQEGGEGLSKEPAGSDEQKQLRADPPSTDLNTFTVEQLKAQLTERGITFKQSATKAELIALFAPADGEKSEA 131
                                    10        20        30        40        50        60        70        80        90       100       110       120       130
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 2)

NMR Structure
(-)
Class: All alpha proteins (14657)
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2OUT)

(-) Pfam Domains  (1, 1)

NMR Structure
(-)
Clan: HeH (20)

(-) Gene Ontology  (1, 1)

NMR Structure(hide GO term definitions)
Chain A   (VG35_HAEIN | P44228)
biological process
    GO:0006353    DNA-templated transcription, termination    The cellular process that completes DNA-templated transcription; the formation of phosphodiester bonds ceases, the RNA-DNA hybrid dissociates, and RNA polymerase releases the DNA.

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