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(-) Description

Title :  CRYSTAL STRUCTURE OF A PUTATIVE METALLOENZYME OF THE DUF664 FAMILY (DR_1065) FROM DEINOCOCCUS RADIODURANS AT 1.80 A RESOLUTION
 
Authors :  Joint Center For Structural Genomics (Jcsg)
Date :  09 Feb 07  (Deposition) - 20 Feb 07  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.80
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (2x)
Keywords :  Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi-2, Metal Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of Hypothetical Protein (Np_294789. 1) Fro Deinococcus Radiodurans At 1. 80 A Resolution
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - HYPOTHETICAL PROTEIN
    Atcc: 13939
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: SPEEDET
    Expression System Strain: HK100
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: NP_294789.1, DR_1065
    Organism Scientific: DEINOCOCCUS RADIODURANS
    Organism Taxid: 1299
    Strain: DSM 20539, IFO 15346, LMG 4051, NCIB 9279, R1

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (2x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 8)

Asymmetric Unit (4, 8)
No.NameCountTypeFull Name
1GOL2Ligand/IonGLYCEROL
2MSE3Mod. Amino AcidSELENOMETHIONINE
3NI1Ligand/IonNICKEL (II) ION
4SO42Ligand/IonSULFATE ION
Biological Unit 1 (3, 14)
No.NameCountTypeFull Name
1GOL4Ligand/IonGLYCEROL
2MSE6Mod. Amino AcidSELENOMETHIONINE
3NI-1Ligand/IonNICKEL (II) ION
4SO44Ligand/IonSULFATE ION

(-) Sites  (5, 5)

Asymmetric Unit (5, 5)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHIS A:76 , ASP A:168 , HIS A:172 , HOH A:403 , HOH A:436 , HOH A:449BINDING SITE FOR RESIDUE NI A 300
2AC2SOFTWAREPRO A:115 , ALA A:116 , LYS A:142 , HOH A:337 , HOH A:377 , HOH A:541BINDING SITE FOR RESIDUE SO4 A 301
3AC3SOFTWAREASN A:171 , HIS A:172 , GLN A:175 , ARG A:177 , HOH A:402 , HOH A:403 , HOH A:409 , HOH A:449 , HOH A:477BINDING SITE FOR RESIDUE SO4 A 302
4AC4SOFTWARETHR A:72 , TRP A:104 , HOH A:363 , HOH A:388 , HOH A:532BINDING SITE FOR RESIDUE GOL A 303
5AC5SOFTWAREVAL A:83 , TYR A:84 , HIS A:164BINDING SITE FOR RESIDUE GOL A 304

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2OU6)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2OU6)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2OU6)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2OU6)

(-) Exons   (0, 0)

(no "Exon" information available for 2OU6)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:183
 aligned with Q9RVG4_DEIRA | Q9RVG4 from UniProtKB/TrEMBL  Length:189

    Alignment length:183
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181   
         Q9RVG4_DEIRA     2 PTFNPELHAQTLNSERAYFVQPDADPAFTPHIGALVEMLTYARLTTLQAVEGLPEDQLWATAPGFANSIGTLLAHIAAVERVYHVLSFQGRDVTPEDDGAAYWGLTMGKEGTAPARLPTLDELRAELADARAETLRVFAAKDDAWLAEPLGPGWANQHWAWFHVMEDEVNHRGQLRLLRQVLA 184
               SCOP domains d2ou6a1 A:2-184 Hypothetical protein DR1065                                                                                                                                             SCOP domains
               CATH domains 2ou6A00 A:2-184 dinb family like domain                                                                                                                                                 CATH domains
               Pfam domains ---------------------------------DUF664-2ou6A01 A:35-184                                                                                                                                Pfam domains
         Sec.struct. author ...hhhhh.....hhhhhh.........hhhhhhhhhhhhhhhhhhhhhhh..hhhhh.........hhhhhhhhhhhhhhhhhhhhh.........hhhhhhhhh............hhhhhhhhhhhhhhhhhhhhh..hhhhhh........hhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2ou6 A   2 PTFNPELHAQTLNSERAYFVQPDADPAFTPHIGALVEmLTYARLTTLQAVEGLPEDQLWATAPGFANSIGTLLAHIAAVERVYHVLSFQGRDVTPEDDGAAYWGLTmGKEGTAPARLPTLDELRAELADARAETLRVFAAKDDAWLAEPLGPGWANQHWAWFHVmEDEVNHRGQLRLLRQVLA 184
                                    11        21        31       |41        51        61        71        81        91       101      |111       121       131       141       151       161    |  171       181   
                                                                39-MSE                                                              108-MSE                                                   166-MSE
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric Unit
(-)
Class: All alpha proteins (14657)

(-) CATH Domains  (1, 1)

Asymmetric Unit
(-)
Class: Mainly Alpha (13335)

(-) Pfam Domains  (1, 1)

Asymmetric Unit
(-)
Clan: DinB (11)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 2OU6)

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