Show PDB file:   
         Plain Text   HTML   (compressed file size)
QuickSearch:   
by PDB,NDB,UniProt,PROSITE Code or Search Term(s)  
(-)Asym.Unit - manually
(-)Asymmetric Unit
(-)Asym. Unit - sites
(-)Biological Unit 1
(-)Biol. Unit 1 - sites
(-)Biological Unit 2
(-)Biological Unit 3
(-)Biological Unit 4
(-)Biological Unit 5
(-)Biological Unit 6
collapse expand < >
Image Asym.Unit - manually
Asym.Unit - manually  (Jmol Viewer)
Image Asymmetric Unit
Asymmetric Unit  (Jmol Viewer)
Image Asym. Unit - sites
Asym. Unit - sites  (Jmol Viewer)
Image Biological Unit 1
Biological Unit 1  (Jmol Viewer)
Image Biol. Unit 1 - sites
Biol. Unit 1 - sites  (Jmol Viewer)
Image Biological Unit 2
Biological Unit 2  (Jmol Viewer)
Image Biological Unit 3
Biological Unit 3  (Jmol Viewer)
Image Biological Unit 4
Biological Unit 4  (Jmol Viewer)
Image Biological Unit 5
Biological Unit 5  (Jmol Viewer)
Image Biological Unit 6
Biological Unit 6  (Jmol Viewer)

(-) Description

Title :  CRYSTAL STRUCTURE OF AN ISOMERASE FROM STREPTOMYCES COELICOLOR A3(2)
 
Authors :  R. Agarwal, S. K. Burley, S. Swaminathan, New York Sgx Research Cen Structural Genomics (Nysgxrc)
Date :  31 Jan 07  (Deposition) - 20 Feb 07  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.98
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  C  (1x)
Biol. Unit 4:  D  (1x)
Biol. Unit 5:  A,C  (4x)
Biol. Unit 6:  B,D  (4x)
Keywords :  9291A, Psi-Ii, Psi-2, Nysgxrc, Isomerase, Enolase, Tim Barrel, Structural Genomics, Protein Structure Initiative, New York Sgx Research Center For Structural Genomics (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  R. Agarwal, S. K. Burley, S. Swaminathan
Crystal Structure Of An Isomerase From Streptomyces Coelicolor
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - PUTATIVE ISOMERASE
    Atcc: BAA-471
    Chains: A, B, C, D
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PSGX3(BC)
    Expression System Strain: BL21(DE3)CODON PLUS RIL
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: SCO7570, SC5F1.24
    Organism Scientific: STREPTOMYCES COELICOLOR A3(2)
    Organism Taxid: 100226
    Strain: A3(2), M145

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): A   
Biological Unit 2 (1x):  B  
Biological Unit 3 (1x):   C 
Biological Unit 4 (1x):    D
Biological Unit 5 (4x): A C 
Biological Unit 6 (4x):  B D

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 44)

Asymmetric Unit (2, 44)
No.NameCountTypeFull Name
1MSE40Mod. Amino AcidSELENOMETHIONINE
2SO44Ligand/IonSULFATE ION
Biological Unit 1 (2, 11)
No.NameCountTypeFull Name
1MSE10Mod. Amino AcidSELENOMETHIONINE
2SO41Ligand/IonSULFATE ION
Biological Unit 2 (2, 11)
No.NameCountTypeFull Name
1MSE10Mod. Amino AcidSELENOMETHIONINE
2SO41Ligand/IonSULFATE ION
Biological Unit 3 (2, 11)
No.NameCountTypeFull Name
1MSE10Mod. Amino AcidSELENOMETHIONINE
2SO41Ligand/IonSULFATE ION
Biological Unit 4 (2, 11)
No.NameCountTypeFull Name
1MSE10Mod. Amino AcidSELENOMETHIONINE
2SO41Ligand/IonSULFATE ION
Biological Unit 5 (2, 88)
No.NameCountTypeFull Name
1MSE80Mod. Amino AcidSELENOMETHIONINE
2SO48Ligand/IonSULFATE ION
Biological Unit 6 (2, 88)
No.NameCountTypeFull Name
1MSE80Mod. Amino AcidSELENOMETHIONINE
2SO48Ligand/IonSULFATE ION

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREARG A:125 , SER A:320 , HOH A:680 , HOH A:702BINDING SITE FOR RESIDUE SO4 A 501
2AC2SOFTWAREARG B:125 , HOH B:661 , HOH B:672 , HOH B:682 , HOH B:719BINDING SITE FOR RESIDUE SO4 B 501
3AC3SOFTWAREARG C:125 , SER C:320 , HOH C:634 , HOH C:733BINDING SITE FOR RESIDUE SO4 C 501
4AC4SOFTWAREARG D:125 , SER D:320 , HOH D:681 , HOH D:732 , HOH D:736BINDING SITE FOR RESIDUE SO4 D 501

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2OQH)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2OQH)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2OQH)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2OQH)

(-) Exons   (0, 0)

(no "Exon" information available for 2OQH)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:360
 aligned with Q9F3A5_STRCO | Q9F3A5 from UniProtKB/TrEMBL  Length:375

    Alignment length:368
                             1                                                                                                                                                                                                                                                                                                                                                                              
                             |       9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359        
         Q9F3A5_STRCO     - -MKITDVDVWVVNLPLVNPFTSSFETKTGETRTVVRVRTDSGVEGWGETMWGAPVAAIVRRMAPDLIGTSPFALEAFHRKQHMVPFFYGYLGYAAIAAVDVACWDAMGKATGQSVTDLLGGAVRDEVPITALITRADAPGATPADLPKAMAEHAVRVVEEGGFDAVKLKGTTDCAGDVAILRAVREALPGVNLRVDPNAAWSVPDSVRAGIALEELDLEYLEDPCVGIEGMAQVKAKVRIPLCTNMCVVRFEDFAPAMRLNAVDVIHGDVYKWGGIAATKALAAHCETFGLGMNLHSGGELGIATAAHLAVVSSTPVLSRAIDSMYYLHADDIIEPLHLENGRLRVPSGPGLGVSVDEDKLRHYAGVN 367
               SCOP domains d2oqha1 A:2-122 auto        mated matches                                                                                d2oqha2 A:123-369 automated matches                                                                                                                                                                                                                     SCOP domains
               CATH domains 2oqhA01       2oqhA2        oqhA01 A:2-15,A:21-113,A:355-369 Enolase-like, N-terminal domain                    2oqhA02 A:16-20,A:114-354 Enolase superfamily                                                                                                                                                                                                    2oqhA01         CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeeeeeee......--------.eeeeeeeeee....eeeeeee.hhhhhhhhhhhhhhh......hhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhh......eeeeeeeehhhhh......hhhhhhhhhhhhhhhhhh..eeeee...hhhhhhhhhhhhhhhh...eeeee.....hhhhhhhhhhhhhhhh..eee...hhhhhhhhhhhhh...eee.....hhhhhhhhhhh....eeeehhhhhhhhhhhhhhhhhhhhh..eeee.....hhhhhhhhhhhhhhh......ee.hhhhh.........ee..eee...........hhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2oqh A   2 SLKITDVDVWVVNLPLVNPF--------GETRTVVRVRTDSGVEGWGETmWGAPVAAIVRRmAPDLIGTSPFALEAFHRKQHmVPFFYGYLGYAAIAAVDVACWDAmGKATGQSVTDLLGGAVRDEVPITALITRADAPGATPADLPKAmAEHAVRVVEEGGFDAVKLKGTTDCAGDVAILRAVREALPGVNLRVDPNAAWSVPDSVRAGIALEELDLEYLEDPCVGIEGmAQVKAKVRIPLCTNmCVVRFEDFAPAmRLNAVDVIHGDVYKWGGIAATKALAAHCETFGLGmNLHSGGELGIATAAHLAVVSSTPVLSRAIDSmYYLHADDIIEPLHLENGRLRVPSGPGLGVSVDEDKLRHYAGVN 369
                                    11        21        31        41        51        61 |      71        81  |     91       101      |111       121       131       141       151       161       171       181       191       201       211       221       231|      241     | 251       261       271       281       291  |    301       311       321    |  331       341       351       361        
                                              21       30                   51-MSE      63-MSE               84-MSE                 108-MSE                                    151-MSE                                                                          232-MSE        247-MSE     259-MSE                            294-MSE                         326-MSE                                       


Chain B from PDB  Type:PROTEIN  Length:374
 aligned with Q9F3A5_STRCO | Q9F3A5 from UniProtKB/TrEMBL  Length:375

    Alignment length:374
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370    
         Q9F3A5_STRCO     1 MKITDVDVWVVNLPLVNPFTSSFETKTGETRTVVRVRTDSGVEGWGETMWGAPVAAIVRRMAPDLIGTSPFALEAFHRKQHMVPFFYGYLGYAAIAAVDVACWDAMGKATGQSVTDLLGGAVRDEVPITALITRADAPGATPADLPKAMAEHAVRVVEEGGFDAVKLKGTTDCAGDVAILRAVREALPGVNLRVDPNAAWSVPDSVRAGIALEELDLEYLEDPCVGIEGMAQVKAKVRIPLCTNMCVVRFEDFAPAMRLNAVDVIHGDVYKWGGIAATKALAAHCETFGLGMNLHSGGELGIATAAHLAVVSSTPVLSRAIDSMYYLHADDIIEPLHLENGRLRVPSGPGLGVSVDEDKLRHYAGVNERDGDLT 374
               SCOP domains d2oqhb1 B:3-122 automated matches                                                                                       d2oqhb2 B:123-376 automated matches                                                                                                                                                                                                                            SCOP domains
               CATH domains 2oqhB01 B:3-113,B:355-376 Enolase-like, N-terminal domain                                                      2oqhB02 B:114-354 Enolase superfamily                                                                                                                                                                                                            2oqhB01                CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeeeeeeee...........eeeeeeeeeeee....eeeeee..hhhhhhhhhhhhhhhh.....hhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhh.....eeeeeeeehhhhh......hhhhhhhhhhhhhhhhhh..eeeee...hhhhhhhhhhhhhhhh...eeeee.....hhhhhhhhhhhhhhhh..eee...hhhhhhhhhhhhh...eee.....hhhhhhhhhhh....eeeehhhhhhhhhhhhhhhhhhhhh..eeee.....hhhhhhhhhhhhhhh......ee.hhhhh.........ee..eee...........hhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2oqh B   3 LKITDVDVWVVNLPLVNPFTSSFETKTGETRTVVRVRTDSGVEGWGETmWGAPVAAIVRRmAPDLIGTSPFALEAFHRKQHmVPFFYGYLGYAAIAAVDVACWDAmGKATGQSVTDLLGGAVRDEVPITALITRADAPGATPADLPKAmAEHAVRVVEEGGFDAVKLKGTTDCAGDVAILRAVREALPGVNLRVDPNAAWSVPDSVRAGIALEELDLEYLEDPCVGIEGmAQVKAKVRIPLCTNmCVVRFEDFAPAmRLNAVDVIHGDVYKWGGIAATKALAAHCETFGLGmNLHSGGELGIATAAHLAVVSSTPVLSRAIDSmYYLHADDIIEPLHLENGRLRVPSGPGLGVSVDEDKLRHYAGVNERDGDLT 376
                                    12        22        32        42        52        62|       72        82 |      92       102     | 112       122       132       142       152       162       172       182       192       202       212       222       232       242    |  252      |262       272       282       292 |     302       312       322   |   332       342       352       362       372    
                                                                           51-MSE      63-MSE               84-MSE                 108-MSE                                    151-MSE                                                                          232-MSE        247-MSE     259-MSE                            294-MSE                         326-MSE                                              


Chain C from PDB  Type:PROTEIN  Length:368
 aligned with Q9F3A5_STRCO | Q9F3A5 from UniProtKB/TrEMBL  Length:375

    Alignment length:368
                             1                                                                                                                                                                                                                                                                                                                                                                              
                             |       9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359        
         Q9F3A5_STRCO     - -MKITDVDVWVVNLPLVNPFTSSFETKTGETRTVVRVRTDSGVEGWGETMWGAPVAAIVRRMAPDLIGTSPFALEAFHRKQHMVPFFYGYLGYAAIAAVDVACWDAMGKATGQSVTDLLGGAVRDEVPITALITRADAPGATPADLPKAMAEHAVRVVEEGGFDAVKLKGTTDCAGDVAILRAVREALPGVNLRVDPNAAWSVPDSVRAGIALEELDLEYLEDPCVGIEGMAQVKAKVRIPLCTNMCVVRFEDFAPAMRLNAVDVIHGDVYKWGGIAATKALAAHCETFGLGMNLHSGGELGIATAAHLAVVSSTPVLSRAIDSMYYLHADDIIEPLHLENGRLRVPSGPGLGVSVDEDKLRHYAGVN 367
               SCOP domains d2oqhc1 C:2-122 automated matches                                                                                        d2oqhc2 C:123-369 automated matches                                                                                                                                                                                                                     SCOP domains
               CATH domains 2oqhC01       2oqhC2oqhC01 C:2-15,C:21-113,C:355-369 Enolase-like, N-terminal domain                            2oqhC02 C:16-20,C:114-354 Enolase superfamily                                                                                                                                                                                                    2oqhC01         CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeeeeeeee.............eeeeeeeeeee....eeeeeee.hhhhhhhhhhhhhhhh.....hhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhh.....eeeeeeeehhhhh...hhhhhhhhhhhhhhhhhhhhh..eeeee...hhhhhhhhhhhhhhhh...eeeee.....hhhhhhhhhhhhhhhh..eee...hhhhhhhhhhhhh...eee.....hhhhhhhhhhh....eeee......hhhhhhhhhhhhhhh..eeee.....hhhhhhhhhhhhhhh......ee.hhhhh.........ee..eee...........hhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2oqh C   2 SLKITDVDVWVVNLPLVNPFTSSFETKTGETRTVVRVRTDSGVEGWGETmWGAPVAAIVRRmAPDLIGTSPFALEAFHRKQHmVPFFYGYLGYAAIAAVDVACWDAmGKATGQSVTDLLGGAVRDEVPITALITRADAPGATPADLPKAmAEHAVRVVEEGGFDAVKLKGTTDCAGDVAILRAVREALPGVNLRVDPNAAWSVPDSVRAGIALEELDLEYLEDPCVGIEGmAQVKAKVRIPLCTNmCVVRFEDFAPAmRLNAVDVIHGDVYKWGGIAATKALAAHCETFGLGmNLHSGGELGIATAAHLAVVSSTPVLSRAIDSmYYLHADDIIEPLHLENGRLRVPSGPGLGVSVDEDKLRHYAGVN 369
                                    11        21        31        41        51        61 |      71        81  |     91       101      |111       121       131       141       151       161       171       181       191       201       211       221       231|      241     | 251       261       271       281       291  |    301       311       321    |  331       341       351       361        
                                                                            51-MSE      63-MSE               84-MSE                 108-MSE                                    151-MSE                                                                          232-MSE        247-MSE     259-MSE                            294-MSE                         326-MSE                                       


Chain D from PDB  Type:PROTEIN  Length:371
 aligned with Q9F3A5_STRCO | Q9F3A5 from UniProtKB/TrEMBL  Length:375

    Alignment length:375
                             1                                                                                                                                                                                                                                                                                                                                                                                     
                             |       9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369     
         Q9F3A5_STRCO     - -MKITDVDVWVVNLPLVNPFTSSFETKTGETRTVVRVRTDSGVEGWGETMWGAPVAAIVRRMAPDLIGTSPFALEAFHRKQHMVPFFYGYLGYAAIAAVDVACWDAMGKATGQSVTDLLGGAVRDEVPITALITRADAPGATPADLPKAMAEHAVRVVEEGGFDAVKLKGTTDCAGDVAILRAVREALPGVNLRVDPNAAWSVPDSVRAGIALEELDLEYLEDPCVGIEGMAQVKAKVRIPLCTNMCVVRFEDFAPAMRLNAVDVIHGDVYKWGGIAATKALAAHCETFGLGMNLHSGGELGIATAAHLAVVSSTPVLSRAIDSMYYLHADDIIEPLHLENGRLRVPSGPGLGVSVDEDKLRHYAGVNERDGDLT 374
               SCOP domains d2oqhd1 D:2-122 auto    mated matches                                                                                    d2oqhd2 D:123-376 automated matches                                                                                                                                                                                                                            SCOP domains
               CATH domains 2oqhD01 D:2-113,D:35    5-376 Enolase-like, N-terminal domain                                                   2oqhD02 D:114-354 Enolase superfamily                                                                                                                                                                                                            2oqhD01                CATH domains
           Pfam domains (1) ---MR_MLE_N-2oqhD01     D:5-121                                                                                         -----------------------------------------------------------MR_MLE-2oqhD05 D:181-246                                          ---------------------------------------------------------------------------------------------------------------------------------- Pfam domains (1)
           Pfam domains (2) ---MR_MLE_N-2oqhD02     D:5-121                                                                                         -----------------------------------------------------------MR_MLE-2oqhD06 D:181-246                                          ---------------------------------------------------------------------------------------------------------------------------------- Pfam domains (2)
           Pfam domains (3) ---MR_MLE_N-2oqhD03     D:5-121                                                                                         -----------------------------------------------------------MR_MLE-2oqhD07 D:181-246                                          ---------------------------------------------------------------------------------------------------------------------------------- Pfam domains (3)
           Pfam domains (4) ---MR_MLE_N-2oqhD04     D:5-121                                                                                         -----------------------------------------------------------MR_MLE-2oqhD08 D:181-246                                          ---------------------------------------------------------------------------------------------------------------------------------- Pfam domains (4)
           Pfam domains (5) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MR_MLE_C-2oqhD09 D:246-356                                                                                     -------------------- Pfam domains (5)
           Pfam domains (6) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MR_MLE_C-2oqhD10 D:246-356                                                                                     -------------------- Pfam domains (6)
           Pfam domains (7) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MR_MLE_C-2oqhD11 D:246-356                                                                                     -------------------- Pfam domains (7)
           Pfam domains (8) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MR_MLE_C-2oqhD12 D:246-356                                                                                     -------------------- Pfam domains (8)
         Sec.struct. author ...eeeeeeeeeee......----.....eeeeeeeeee....eeeeeee.hhhhhhhhhhhhhhhh.....hhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhh.....eeeeeeeehhhhh...hhhhhhhhhhhhhhhhhhhhh..eeeee...hhhhhhhhhhhhhhhh...eeeee.....hhhhhhhhhhhhhhhh..eee...hhhhhhhhhhhhh...eee.....hhhhhhhhhhh....eeeehhhhhhhhhhhhhhhhhhhhh..eeee.....hhhhhhhhhhhhhh.......ee.hhhhh.........ee..eee...........hhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2oqh D   2 SLKITDVDVWVVNLPLVNPF----ETKTGETRTVVRVRTDSGVEGWGETmWGAPVAAIVRRmAPDLIGTSPFALEAFHRKQHmVPFFYGYLGYAAIAAVDVACWDAmGKATGQSVTDLLGGAVRDEVPITALITRADAPGATPADLPKAmAEHAVRVVEEGGFDAVKLKGTTDCAGDVAILRAVREALPGVNLRVDPNAAWSVPDSVRAGIALEELDLEYLEDPCVGIEGmAQVKAKVRIPLCTNmCVVRFEDFAPAmRLNAVDVIHGDVYKWGGIAATKALAAHCETFGLGmNLHSGGELGIATAAHLAVVSSTPVLSRAIDSmYYLHADDIIEPLHLENGRLRVPSGPGLGVSVDEDKLRHYAGVNERDGDLT 376
                                    11        21    |   31        41        51        61 |      71        81  |     91       101      |111       121       131       141       151       161       171       181       191       201       211       221       231|      241     | 251       261       271       281       291  |    301       311       321    |  331       341       351       361       371     
                                              21   26                       51-MSE      63-MSE               84-MSE                 108-MSE                                    151-MSE                                                                          232-MSE        247-MSE     259-MSE                            294-MSE                         326-MSE
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 8)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (2, 8)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (3, 12)

Asymmetric Unit
(-)
Clan: Enolase_N (69)
(-)
Clan: Enolase_TIM (82)

(-) Gene Ontology  (4, 4)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D   (Q9F3A5_STRCO | Q9F3A5)
molecular function
    GO:0003824    catalytic activity    Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
    GO:0016853    isomerase activity    Catalysis of the geometric or structural changes within one molecule. Isomerase is the systematic name for any enzyme of EC class 5.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
biological process
    GO:0008152    metabolic process    The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.

 Visualization

(-) Interactive Views

Asymmetric Unit
  Complete Structure
    Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
    WebMol | AstexViewer[tm]@PDBe
(Java Applets, require no local installation except for Java; loading may be slow)
    STRAP
(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    RasMol
(require local installation)
    Molscript (VRML)
(requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)
 
  Ligands, Modified Residues, Ions
    MSE  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    SO4  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
 
  Sites
    AC1  [ RasMol ]  +environment [ RasMol ]
    AC2  [ RasMol ]  +environment [ RasMol ]
    AC3  [ RasMol ]  +environment [ RasMol ]
    AC4  [ RasMol ]  +environment [ RasMol ]
 
  Cis Peptide Bonds
(no "Cis Peptide Bonds" information available for 2oqh)
 
Biological Units
  Complete Structure
    Biological Unit 1  [ Jena3D ]
    Biological Unit 2  [ Jena3D ]
    Biological Unit 3  [ Jena3D ]
    Biological Unit 4  [ Jena3D ]
    Biological Unit 5  [ Jena3D ]
    Biological Unit 6  [ Jena3D ]

(-) Still Images

Jmol
  protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick
[ Asym. Unit PNG format | Asym. Unit - sites PNG format | Biol. Unit 1 PNG format | Biol. Unit 1 - sites PNG format | Biol. Unit 2 PNG format | Biol. Unit 3 PNG format | Biol. Unit 4 PNG format | Biol. Unit 5 PNG format | Biol. Unit 6 PNG format ](automatic orientation, automatically generated)
Molscript
  protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick
[ mono PDF format | stereo PDF format ](default orientation, automatically generated)

 Databases and Analysis Tools

(-) Databases

Access by PDB/NDB ID
  2oqh
    Family and Domain Information: ProDom | SYSTERS
    General Structural Information: GlycoscienceDB | MMDB | NDB | OCA | PDB | PDBe | PDBj | PDBsum | PDBWiki | PQS | PROTEOPEDIA
    Orientation in Membranes: OPM
    Protein Surface: SURFACE
    Secondary Structure: DSSP (structure derived) | HSSP (homology derived)
    Structural Genomics: GeneCensus
    Structural Neighbours: CE | VAST
    Structure Classification: CATH | Dali | SCOP
    Validation and Original Data: BMRB Data View | BMRB Restraints Grid | EDS | PROCHECK | RECOORD | WHAT_CHECK
 
Access by UniProt ID/Accession number
  Q9F3A5_STRCO | Q9F3A5
    Comparative Protein Structure Models: ModBase
    Genomic Information: Ensembl
    Protein-protein Interaction: DIP
    Sequence, Family and Domain Information: InterPro | Pfam | SMART | UniProtKB/TrEMBL
 
Access by Enzyme Classificator   (EC Number)
  (no 'Enzyme Classificator' available)
    General Enzyme Information: BRENDA | EC-PDB | Enzyme | IntEnz
    Pathway: KEGG | MetaCyc
 
Access by Disease Identifier   (MIM ID)
  (no 'MIM ID' available)
    Disease Information: OMIM
 
Access by GenAge ID
  (no 'GenAge ID' available)
    Age Related Information: GenAge

(-) Analysis Tools

Access by PDB/NDB ID
    Domain Information: XDom
    Interatomic Contacts of Structural Units: CSU
    Ligand-protein Contacts: LPC
    Protein Cavities: castP
    Sequence and Secondary Structure: PDBCartoon
    Structure Alignment: STRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    Structure and Sequence Browser: STING
 
Access by UniProt ID/Accession number
  Q9F3A5_STRCO | Q9F3A5
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)

 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q9F3A5_STRCO | Q9F3A5: 4dye

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 2OQH)