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(-) Description

Title :  CRYSTAL STRUCTURE OF AN OSMC-LIKE PROTEIN (GSU2788) FROM GEOBACTER SULFURREDUCENS AT 1.50 A RESOLUTION
 
Authors :  Joint Center For Structural Genomics (Jcsg)
Date :  29 Jan 07  (Deposition) - 13 Feb 07  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.50
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi-2, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of Hypothetical Protein (Np_953832. 1) Fro Geobacter Sulfurreducens At 1. 50 A Resolution
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - HYPOTHETICAL PROTEIN
    Atcc: 51573
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: SPEEDET
    Expression System Strain: HK100
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: NP_953832.1, GSU2788
    Organism Scientific: GEOBACTER SULFURREDUCENS
    Organism Taxid: 35554
    Strain: DSM 12127, PCA
 
Molecule 2 - HYPOTHETICAL PROTEIN
    Atcc: 51573
    Chains: B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: SPEEDET
    Expression System Strain: HK100
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: NP_953832.1, GSU2788
    Organism Scientific: GEOBACTER SULFURREDUCENS
    Organism Taxid: 35554
    Strain: DSM 12127, PCA

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (6, 13)

Asymmetric/Biological Unit (6, 13)
No.NameCountTypeFull Name
1ACT1Ligand/IonACETATE ION
2CSD1Mod. Amino Acid3-SULFINOALANINE
3MSE8Mod. Amino AcidSELENOMETHIONINE
4NA1Ligand/IonSODIUM ION
5P6G1Ligand/IonHEXAETHYLENE GLYCOL
6SO41Ligand/IonSULFATE ION

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETHR A:172 , VAL A:173 , LYS A:175 , THR B:172 , VAL B:173 , LYS B:175BINDING SITE FOR RESIDUE NA A 187
2AC2SOFTWAREVAL A:6 , ASN A:11 , LYS A:32 , ARG A:34 , GLU A:58BINDING SITE FOR RESIDUE ACT A 188
3AC3SOFTWAREARG B:161 , MSE B:162 , LYS B:165 , TYR B:166BINDING SITE FOR RESIDUE SO4 B 187
4AC4SOFTWAREARG A:112 , GLY A:113 , ASP A:148 , HOH A:284 , HOH A:439 , HOH A:440 , TRP B:39BINDING SITE FOR RESIDUE P6G A 189

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2OPL)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2OPL)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2OPL)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2OPL)

(-) Exons   (0, 0)

(no "Exon" information available for 2OPL)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:182
 aligned with Q749F5_GEOSL | Q749F5 from UniProtKB/TrEMBL  Length:186

    Alignment length:182
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183  
         Q749F5_GEOSL     4 TTVVNGVNVDQLMATIEQIKAKPEIAQFKFRATNQWMGGTHNQATIKDFYGACAEDDTRKPMVFDLDEPPVLLGENRGANPVEYLLVALSGCLTTSLVAHAAARGIALRGVKSRYEGDIDLRGFLGLSEEVPVGYREIRVFFSIDADLTDGQKEELIRMAQKYSPVYNTVAKPVPVAVLLDR 185
               SCOP domains d2opla1 A:4-185 Hypothetical protein GSU2788                                                                                                                                           SCOP domains
               CATH domains 2oplA01 A:4-175  [code=3.30.300.20, no name defined]                                                                                                                        ---------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..ee..eehhhhhhhhhhhhhhhhh.eeeeeeeeee.....eeeee..eee..eee.....eeeee..hhhhh......hhhhhhhhhhhhhhhhhhhhhhhhh.....eeeeeeeeeee................eeeeeeeee...hhhhhhhhhhhhhhhhhhhhhhhh...eeeee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2opl A   4 TTVVNGVNVDQLmATIEQIKAKPEIAQFKFRATNQWmGGTHNQATIKDFYGAcAEDDTRKPmVFDLDEPPVLLGENRGANPVEYLLVALSGCLTTSLVAHAAARGIALRGVKSRYEGDIDLRGFLGLSEEVPVGYREIRVFFSIDADLTDGQKEELIRmAQKYSPVYNTVAKPVPVAVLLDR 185
                                    13  |     23        33      | 43        53  |     63 |      73        83        93       103       113       123       133       143       153       163       173       183  
                                       16-MSE                  40-MSE          56-CSD   65-MSE                                                                                          162-MSE                   


Chain B from PDB  Type:PROTEIN  Length:182
 aligned with Q749F5_GEOSL | Q749F5 from UniProtKB/TrEMBL  Length:186

    Alignment length:182
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184  
         Q749F5_GEOSL     5 TVVNGVNVDQLMATIEQIKAKPEIAQFKFRATNQWMGGTHNQATIKDFYGACAEDDTRKPMVFDLDEPPVLLGENRGANPVEYLLVALSGCLTTSLVAHAAARGIALRGVKSRYEGDIDLRGFLGLSEEVPVGYREIRVFFSIDADLTDGQKEELIRMAQKYSPVYNTVAKPVPVAVLLDRG 186
               SCOP domains d2oplb1 B:5-186 Hypothetical protein GSU2788                                                                                                                                           SCOP domains
               CATH domains 2oplB01 B:5-174  [code=3.30.300.20, no name defined]                                                                                                                      ------------ CATH domains
           Pfam domains (1) ------------------------------------------------------------------------OsmC-2oplB01 B:77-182                                                                                     ---- Pfam domains (1)
           Pfam domains (2) ------------------------------------------------------------------------OsmC-2oplB02 B:77-182                                                                                     ---- Pfam domains (2)
         Sec.struct. author .ee..eehhhhhhhhhhhhhhhhh.eeeeeeeeeeee..eeeeee..eee..eee.....eeeee..hhhhh......hhhhhhhhhhhhhhhhhhhhhhhhh.....eeeeeeeeeee................eeeeeeeee...hhhhhhhhhhhhhhhhhhhhhhhh...eeeee... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2opl B   5 TVVNGVNVDQLmATIEQIKAKPEIAQFKFRATNQWmGGTHNQATIKDFYGACAEDDTRKPmVFDLDEPPVLLGENRGANPVEYLLVALSGCLTTSLVAHAAARGIALRGVKSRYEGDIDLRGFLGLSEEVPVGYREIRVFFSIDADLTDGQKEELIRmAQKYSPVYNTVAKPVPVAVLLDRG 186
                                    14 |      24        34     |  44        54        64|       74        84        94       104       114       124       134       144       154       164       174       184  
                                      16-MSE                  40-MSE                   65-MSE                                                                                          162-MSE
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Clan: no clan defined [family: OsmC] (11)

(-) Gene Ontology  (3, 3)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B   (Q749F5_GEOSL | Q749F5)
molecular function
    GO:0003674    molecular_function    Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions.
biological process
    GO:0008150    biological_process    Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
cellular component
    GO:0005575    cellular_component    The part of a cell, extracellular environment or virus in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together.

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