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(-) Description

Title :  PUTATIVE ANTIBIOTIC BIOSYNTHESIS MONOOXYGENASE FROM NITROSOMONAS EUROPAEA
 
Authors :  J. Osipiuk, E. Evdokimova, O. Kagan, A. Savchenko, A. Edwards, A. Joach Midwest Center For Structural Genomics (Mcsg)
Date :  22 Jan 07  (Deposition) - 30 Jan 07  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.83
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H
Biol. Unit 1:  A,H  (1x)
Biol. Unit 2:  B,C  (1x)
Biol. Unit 3:  D,G  (1x)
Biol. Unit 4:  E,F  (1x)
Keywords :  Structural Genomics, Apc6266, Psi-2, Protein Structure Initiative, Midwest Center For Structural Genomics, Mcsg, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  J. Osipiuk, E. Evdokimova, O. Kagan, A. Savchenko, A. Edwards, A. Joachimiak
X-Ray Structure Of Putative Antibiotic Biosynthesis Monooxygenase From Nitrosomonas Europaea.
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - DUF176
    Atcc19718
    ChainsA, B, C, D, E, F, G, H
    EngineeredYES
    Expression SystemESCHERICHIA COLI BL21(DE3)
    Expression System PlasmidPET15B MODIFIED
    Expression System StrainBL21(DE3)
    Expression System Taxid469008
    Expression System Vector TypePLASMID
    GeneNE0621
    Organism ScientificNITROSOMONAS EUROPAEA
    Organism Taxid915
    StrainIFO 14298
    SynonymPUTATIVE ANTIBIOTIC BIOSYNTHESIS MONOOXYGENASE

 Structural Features

(-) Chains, Units

  12345678
Asymmetric Unit ABCDEFGH
Biological Unit 1 (1x)A      H
Biological Unit 2 (1x) BC     
Biological Unit 3 (1x)   D  G 
Biological Unit 4 (1x)    EF  

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 32)

Asymmetric Unit (1, 32)
No.NameCountTypeFull Name
1MSE32Mod. Amino AcidSELENOMETHIONINE
Biological Unit 1 (1, 8)
No.NameCountTypeFull Name
1MSE8Mod. Amino AcidSELENOMETHIONINE
Biological Unit 2 (1, 8)
No.NameCountTypeFull Name
1MSE8Mod. Amino AcidSELENOMETHIONINE
Biological Unit 3 (1, 8)
No.NameCountTypeFull Name
1MSE8Mod. Amino AcidSELENOMETHIONINE
Biological Unit 4 (1, 8)
No.NameCountTypeFull Name
1MSE8Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (0, 0)

(no "Site" information available for 2OMO)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2OMO)

(-) Cis Peptide Bonds  (6, 6)

Asymmetric Unit
No.Residues
1Tyr A:95 -Pro A:96
2Tyr B:95 -Pro B:96
3Tyr C:95 -Pro C:96
4Tyr D:95 -Pro D:96
5Tyr G:95 -Pro G:96
6Tyr H:95 -Pro H:96

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2OMO)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2OMO)

(-) Exons   (0, 0)

(no "Exon" information available for 2OMO)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:105
 aligned with Q82WP3_NITEU | Q82WP3 from UniProtKB/TrEMBL  Length:100

    Alignment length:105
                                   1                                                                                                 
                                   | 3        13        23        33        43        53        63        73        83        93     
          Q82WP3_NITEU    - -------MYVTIVYASVKTDKTEAFKEATRMNHEQSIREPGNMRFDILQSADDPTRFVLYEAYKTRKDAAAHKETAHYLTWRDTVADWMAEPRKGVIYGGLYPTG 98
               SCOP domains -------d2omoa1 A:1-98 Hypothetical protein NE0621                                                         SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........eeeeeeee.hhhhhhhhhhhhhhhhhhhh....eeeeeeeee.....eeeeeeee.hhhhhhhhh.hhhhhhhhhhhhhhh....eeeeeeeee... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------- Transcript
                  2omo A -6 NLYFQGHmYVTIVYASVKTDKTEAFKEATRmNHEQSIREPGNmRFDILQSADDPTRFVLYEAYKTRKDAAAHKETAHYLTWRDTVADWmAEPRKGVIYGGLYPTG 98
                                   | 3        13        23|       33  |     43        53        63        73        83        93     
                                   1-MSE                 24-MSE      36-MSE                                        82-MSE            

Chain B from PDB  Type:PROTEIN  Length:105
 aligned with Q82WP3_NITEU | Q82WP3 from UniProtKB/TrEMBL  Length:100

    Alignment length:105
                                   1                                                                                                 
                                   | 3        13        23        33        43        53        63        73        83        93     
          Q82WP3_NITEU    - -------MYVTIVYASVKTDKTEAFKEATRMNHEQSIREPGNMRFDILQSADDPTRFVLYEAYKTRKDAAAHKETAHYLTWRDTVADWMAEPRKGVIYGGLYPTG 98
               SCOP domains d2omob_ B: Hypothetical protein NE0621                                                                    SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........eeeeeeee.hhhhhhhhhhhhhhhhhhhh....eeeeeeeee.....eeeeeeee.hhhhhhhhh.hhhhhhhhhhhhhhh....eeeeeeeee... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------- Transcript
                  2omo B -6 NLYFQGHmYVTIVYASVKTDKTEAFKEATRmNHEQSIREPGNmRFDILQSADDPTRFVLYEAYKTRKDAAAHKETAHYLTWRDTVADWmAEPRKGVIYGGLYPTG 98
                                   | 3        13        23|       33  |     43        53        63        73        83        93     
                                   1-MSE                 24-MSE      36-MSE                                        82-MSE            

Chain C from PDB  Type:PROTEIN  Length:104
 aligned with Q82WP3_NITEU | Q82WP3 from UniProtKB/TrEMBL  Length:100

    Alignment length:104
                                  1                                                                                                 
                                  |  4        14        24        34        44        54        64        74        84        94    
          Q82WP3_NITEU    - ------MYVTIVYASVKTDKTEAFKEATRMNHEQSIREPGNMRFDILQSADDPTRFVLYEAYKTRKDAAAHKETAHYLTWRDTVADWMAEPRKGVIYGGLYPTG 98
               SCOP domains d2omoc_ C: Hypothetical protein NE0621                                                                   SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......eeeeeeee....hhhhhhhhhhhhhhhhh....eeeeeeeee.....eeeeeeee.hhhhhhhhh.hhhhhhhhhhhhhhh....eeeeeeeee... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------- Transcript
                  2omo C -5 LYFQGHmYVTIVYASVKTDKTEAFKEATRmNHEQSIREPGNmRFDILQSADDPTRFVLYEAYKTRKDAAAHKETAHYLTWRDTVADWmAEPRKGVIYGGLYPTG 98
                                  |  4        14        24        34 |      44        54        64        74       |84        94    
                                  1-MSE                 24-MSE      36-MSE                                        82-MSE            

Chain D from PDB  Type:PROTEIN  Length:104
 aligned with Q82WP3_NITEU | Q82WP3 from UniProtKB/TrEMBL  Length:100

    Alignment length:104
                                   1                                                                                                
                                   | 3        13        23        33        43        53        63        73        83        93    
          Q82WP3_NITEU    - -------MYVTIVYASVKTDKTEAFKEATRMNHEQSIREPGNMRFDILQSADDPTRFVLYEAYKTRKDAAAHKETAHYLTWRDTVADWMAEPRKGVIYGGLYPT 97
               SCOP domains d2omod_ D: Hypothetical protein NE0621                                                                   SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........eeeeeeee.hhhhhhhhhhhhhhhhhhhh....eeeeeeeee.....eeeeeeee.hhhhhhhhh.hhhhhhhhhhhhhhh....eeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------- Transcript
                  2omo D -6 NLYFQGHmYVTIVYASVKTDKTEAFKEATRmNHEQSIREPGNmRFDILQSADDPTRFVLYEAYKTRKDAAAHKETAHYLTWRDTVADWmAEPRKGVIYGGLYPT 97
                                   | 3        13        23|       33  |     43        53        63        73        83        93    
                                   1-MSE                 24-MSE      36-MSE                                        82-MSE           

Chain E from PDB  Type:PROTEIN  Length:95
 aligned with Q82WP3_NITEU | Q82WP3 from UniProtKB/TrEMBL  Length:100

    Alignment length:95
                                    10        20        30        40        50        60        70        80        90     
          Q82WP3_NITEU    1 MYVTIVYASVKTDKTEAFKEATRMNHEQSIREPGNMRFDILQSADDPTRFVLYEAYKTRKDAAAHKETAHYLTWRDTVADWMAEPRKGVIYGGLY 95
               SCOP domains d2omoe_ E: Hypothetical protein NE0621                                                          SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeee.hhhhhhhhhhhhhhhhhhhh....eeeeeeeee.....eeeeeeee.hhhhhhhhh.hhhhhhhhhhhhhhh....eeeeeeeee Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------- Transcript
                  2omo E  1 mYVTIVYASVKTDKTEAFKEATRmNHEQSIREPGNmRFDILQSADDPTRFVLYEAYKTRKDAAAHKETAHYLTWRDTVADWmAEPRKGVIYGGLY 95
                            |       10        20   |    30     |  40        50        60        70        80 |      90     
                            1-MSE                 24-MSE      36-MSE                                        82-MSE         

Chain F from PDB  Type:PROTEIN  Length:96
 aligned with Q82WP3_NITEU | Q82WP3 from UniProtKB/TrEMBL  Length:100

    Alignment length:96
                              1                                                                                             
                              |      8        18        28        38        48        58        68        78        88      
          Q82WP3_NITEU    - --MYVTIVYASVKTDKTEAFKEATRMNHEQSIREPGNMRFDILQSADDPTRFVLYEAYKTRKDAAAHKETAHYLTWRDTVADWMAEPRKGVIYGGL 94
               SCOP domains d2omof_ F: Hypothetical protein NE0621                                                           SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...eeeeeeeee...hhhhhhhhhhhhhhhhh....eeeeeeeee.....eeeeeeee.hhhhhhhhh.hhhhhhhhhhhh..eeeeeeeeeeeee Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------ Transcript
                  2omo F -1 GHmYVTIVYASVKTDKTEAFKEATRmNHEQSIREPGNmRFDILQSADDPTRFVLYEAYKTRKDAAAHKETAHYLTWRDTVADWmAEPRKGVIYGGL 94
                              |      8        18     |  28       |38        48        58        68        78   |    88      
                              1-MSE                 24-MSE      36-MSE                                        82-MSE        

Chain G from PDB  Type:PROTEIN  Length:99
 aligned with Q82WP3_NITEU | Q82WP3 from UniProtKB/TrEMBL  Length:100

    Alignment length:99
                              1                                                                                                
                              |      8        18        28        38        48        58        68        78        88         
          Q82WP3_NITEU    - --MYVTIVYASVKTDKTEAFKEATRMNHEQSIREPGNMRFDILQSADDPTRFVLYEAYKTRKDAAAHKETAHYLTWRDTVADWMAEPRKGVIYGGLYPT 97
               SCOP domains d2omog_ G: Hypothetical protein NE0621                                                              SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeeee....hhhhhhhhhhhhhhhhh....eeeeeeeee.....eeeeeeee.hhhhhhhhh.hhhhhhhhhhhhhhh....eeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------- Transcript
                  2omo G -1 GHmYVTIVYASVKTDKTEAFKEATRmNHEQSIREPGNmRFDILQSADDPTRFVLYEAYKTRKDAAAHKETAHYLTWRDTVADWmAEPRKGVIYGGLYPT 97
                              |      8        18     |  28       |38        48        58        68        78   |    88         
                              1-MSE                 24-MSE      36-MSE                                        82-MSE           

Chain H from PDB  Type:PROTEIN  Length:99
 aligned with Q82WP3_NITEU | Q82WP3 from UniProtKB/TrEMBL  Length:100

    Alignment length:99
                              1                                                                                                
                              |      8        18        28        38        48        58        68        78        88         
          Q82WP3_NITEU    - --MYVTIVYASVKTDKTEAFKEATRMNHEQSIREPGNMRFDILQSADDPTRFVLYEAYKTRKDAAAHKETAHYLTWRDTVADWMAEPRKGVIYGGLYPT 97
               SCOP domains d2omoh_ H: Hypothetical protein NE0621                                                              SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) --ABM-2omoH01 H:1-77                                                           -------------------- Pfam domains (1)
           Pfam domains (2) --ABM-2omoH02 H:1-77                                                           -------------------- Pfam domains (2)
           Pfam domains (3) --ABM-2omoH03 H:1-77                                                           -------------------- Pfam domains (3)
           Pfam domains (4) --ABM-2omoH04 H:1-77                                                           -------------------- Pfam domains (4)
           Pfam domains (5) --ABM-2omoH05 H:1-77                                                           -------------------- Pfam domains (5)
           Pfam domains (6) --ABM-2omoH06 H:1-77                                                           -------------------- Pfam domains (6)
           Pfam domains (7) --ABM-2omoH07 H:1-77                                                           -------------------- Pfam domains (7)
           Pfam domains (8) --ABM-2omoH08 H:1-77                                                           -------------------- Pfam domains (8)
         Sec.struct. author ..eeeeeeeeee...hhhhhhhhhhhhhhhhh....eeeeeeeee.....eeeeeeee.hhhhhhhhh.hhhhhhhhhhhh..eeeeeeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------- Transcript
                  2omo H -1 GHmYVTIVYASVKTDKTEAFKEATRmNHEQSIREPGNmRFDILQSADDPTRFVLYEAYKTRKDAAAHKETAHYLTWRDTVADWmAEPRKGVIYGGLYPT 97
                              |      8        18     |  28       |38        48        58        68        78   |    88         
                              1-MSE                 24-MSE      36-MSE                                        82-MSE           

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 8)

Asymmetric Unit

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2OMO)

(-) Pfam Domains  (1, 8)

Asymmetric Unit
(-)
Family: ABM (9)
1aABM-2omoH01H:1-77
1bABM-2omoH02H:1-77
1cABM-2omoH03H:1-77
1dABM-2omoH04H:1-77
1eABM-2omoH05H:1-77
1fABM-2omoH06H:1-77
1gABM-2omoH07H:1-77
1hABM-2omoH08H:1-77

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 2OMO)

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