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(-) Description

Title :  CRYSTAL STRUCTURE OF Q9HYQ7_PSEAE FROM PSEUDOMONAS AERUGINOSA. NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET PAR82
 
Authors :  J. Benach, H. Neely, J. Seetharaman, X. C. Chen, Y. Fang, K. Cunningham, L. Owens, L. C. Ma, R. Xiao, J. Liu, M. C. Baran, T. B. Acton, B. Rost, G. T. Montelione, J. F. Hunt, L. Tong, Northeast Structural Genomics Consortium (Nesg)
Date :  16 Jan 07  (Deposition) - 23 Jan 07  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.50
Chains :  Asym./Biol. Unit :  A,B,C,D
Keywords :  Par82, Nesg, Structural Genomics, Psi-2, Protein Structure Initiative, Northeast Structural Genomics Consortium, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. Benach, H. Neely, J. Seetharaman, X. C. Chen, Y. Fang, K. Cunningham, L. Owens, L. C. Ma, R. Xiao, J. Liu, M. C. Baran, T. B. Acton, B. Rost, G. T. Montelione, J. F. Hunt, L. Tong
Crystal Structure Of Q9Hyq7_pseae From Pseudomonas Aeruginosa
To Be Published
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - HYPOTHETICAL PROTEIN
    Chains: A, B, C, D
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET21
    Expression System Strain: BL21(DE3)+MAGIC
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: PA3338
    Organism Scientific: PSEUDOMONAS AERUGINOSA
    Organism Taxid: 287

 Structural Features

(-) Chains, Units

  1234
Asymmetric/Biological Unit : ABCD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 2OKA)

(-) Sites  (0, 0)

(no "Site" information available for 2OKA)

(-) SS Bonds  (6, 6)

Asymmetric/Biological Unit
No.Residues
1A:13 -A:16
2A:41 -B:41
3B:13 -B:16
4C:13 -C:16
5C:41 -D:41
6D:13 -D:16

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2OKA)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2OKA)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2OKA)

(-) Exons   (0, 0)

(no "Exon" information available for 2OKA)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:84
 aligned with Q9HYQ7_PSEAE | Q9HYQ7 from UniProtKB/TrEMBL  Length:96

    Alignment length:84
                                    13        23        33        43        53        63        73        83    
          Q9HYQ7_PSEAE    4 AKPEIVITYCTQCQWLLRAAWLAQELLSTFADDLGKVCLEPGTGGVFRITCDGVQVWERKADGGFPEAKALKQRVRDRIDPQRD 87
               SCOP domains d2okaa_ A: automated matches                                                         SCOP domains
               CATH domains 2okaA00 A:4-87 Glutaredoxin                                                          CATH domains
               Pfam domains ------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...eeeeeee....hhhhhhhhhhhhhhhh.....eeeeeee....eeeee..eeeeehhhhh...hhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------ Transcript
                  2oka A  4 AKPEIVITYCTQCQWLLRAAWLAQELLSTFADDLGKVCLEPGTGGVFRITCDGVQVWERKADGGFPEAKALKQRVRDRIDPQRD 87
                                    13        23        33        43        53        63        73        83    


Chain B from PDB  Type:PROTEIN  Length:84
 aligned with Q9HYQ7_PSEAE | Q9HYQ7 from UniProtKB/TrEMBL  Length:96

    Alignment length:84
                                    13        23        33        43        53        63        73        83    
          Q9HYQ7_PSEAE    4 AKPEIVITYCTQCQWLLRAAWLAQELLSTFADDLGKVCLEPGTGGVFRITCDGVQVWERKADGGFPEAKALKQRVRDRIDPQRD 87
               SCOP domains d2okab_ B: automated matches                                                         SCOP domains
               CATH domains 2okaB00 B:4-87 Glutaredoxin                                                          CATH domains
               Pfam domains ------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...eeeeeee....hhhhhhhhhhhhhhhh.....eeeeeee....eeeee..eeeeehhhhh...hhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------ Transcript
                  2oka B  4 AKPEIVITYCTQCQWLLRAAWLAQELLSTFADDLGKVCLEPGTGGVFRITCDGVQVWERKADGGFPEAKALKQRVRDRIDPQRD 87
                                    13        23        33        43        53        63        73        83    


Chain C from PDB  Type:PROTEIN  Length:84
 aligned with Q9HYQ7_PSEAE | Q9HYQ7 from UniProtKB/TrEMBL  Length:96

    Alignment length:84
                                    13        23        33        43        53        63        73        83    
          Q9HYQ7_PSEAE    4 AKPEIVITYCTQCQWLLRAAWLAQELLSTFADDLGKVCLEPGTGGVFRITCDGVQVWERKADGGFPEAKALKQRVRDRIDPQRD 87
               SCOP domains d2okac_ C: automated matches                                                         SCOP domains
               CATH domains 2okaC00 C:4-87 Glutaredoxin                                                          CATH domains
               Pfam domains ------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...eeeeeee....hhhhhhhhhhhhhhhh.....eeeeeee....eeeee..eeeeehhhhh...hhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------ Transcript
                  2oka C  4 AKPEIVITYCTQCQWLLRAAWLAQELLSTFADDLGKVCLEPGTGGVFRITCDGVQVWERKADGGFPEAKALKQRVRDRIDPQRD 87
                                    13        23        33        43        53        63        73        83    


Chain D from PDB  Type:PROTEIN  Length:84
 aligned with Q9HYQ7_PSEAE | Q9HYQ7 from UniProtKB/TrEMBL  Length:96

    Alignment length:84
                                    13        23        33        43        53        63        73        83    
          Q9HYQ7_PSEAE    4 AKPEIVITYCTQCQWLLRAAWLAQELLSTFADDLGKVCLEPGTGGVFRITCDGVQVWERKADGGFPEAKALKQRVRDRIDPQRD 87
               SCOP domains d2okad_ D: automated matches                                                         SCOP domains
               CATH domains 2okaD00 D:4-87 Glutaredoxin                                                          CATH domains
           Pfam domains (1) --Rdx-2okaD01 D:6-81                                                          ------ Pfam domains (1)
           Pfam domains (2) --Rdx-2okaD02 D:6-81                                                          ------ Pfam domains (2)
           Pfam domains (3) --Rdx-2okaD03 D:6-81                                                          ------ Pfam domains (3)
           Pfam domains (4) --Rdx-2okaD04 D:6-81                                                          ------ Pfam domains (4)
         Sec.struct. author ...eeeeeee....hhhhhhhhhhhhhhhh.....eeeeeee....eeeee..eeeeehhhhh...hhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------ Transcript
                  2oka D  4 AKPEIVITYCTQCQWLLRAAWLAQELLSTFADDLGKVCLEPGTGGVFRITCDGVQVWERKADGGFPEAKALKQRVRDRIDPQRD 87
                                    13        23        33        43        53        63        73        83
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 4)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (1, 4)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (1, 4)

Asymmetric/Biological Unit
(-)
Clan: no clan defined [family: Rdx] (5)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 2OKA)

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  2oka
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  Q9HYQ7_PSEAE | Q9HYQ7
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 Related Entries

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