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(-) Description

Title :  THE STRUCTURE OF PUTATIVE TOLB FROM AGROBACTERIUM TUMEFACIENS
 
Authors :  M. E. Cuff, X. Xu, J. Gu, A. Edwards, A. Savchenko, A. Joachimiak, Midwes For Structural Genomics (Mcsg)
Date :  12 Jan 07  (Deposition) - 27 Feb 07  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.85
Chains :  Asym./Biol. Unit :  A
Keywords :  Tolb, Agrobacterium Tumefaciens, 6-Stranded Beta-Propeller, Structural Genomics, Psi-2, Protein Structure Initiative, Midwest Center For Structural Genomics, Mcsg, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. E. Cuff, X. Xu, J. Gu, A. Edwards, A. Savchenko, A. Joachimiak
The Structure Of Putative Tolb From Agrobacterium Tumefaciens
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - UNCHARACTERIZED PROTEIN ATU1656/AGR_C_3050
    Atcc: 33970
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: P11 VARIANT
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: TOLB
    Organism Scientific: AGROBACTERIUM TUMEFACIENS STR.
    Organism Taxid: 176299
    Strain: C58

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 10)

Asymmetric/Biological Unit (2, 10)
No.NameCountTypeFull Name
1ACY2Ligand/IonACETIC ACID
2MSE8Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREPHE A:105 , SER A:190 , PHE A:239 , ASP A:240 , HOH A:535BINDING SITE FOR RESIDUE ACY A 401
2AC2SOFTWARETYR A:130 , ASP A:174 , HIS A:241 , HOH A:441 , HOH A:581BINDING SITE FOR RESIDUE ACY A 402

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2OJH)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Leu A:127 -Pro A:128

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2OJH)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2OJH)

(-) Exons   (0, 0)

(no "Exon" information available for 2OJH)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:277
 aligned with Y1656_AGRFC | Q8UEU8 from UniProtKB/Swiss-Prot  Length:293

    Alignment length:277
                                    25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       
          Y1656_AGRFC    16 GSMRSSIEIFNIRTRKMRVVWQTPELFEAPNWSPDGKYLLLNSEGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGTPRLMTKNLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFPV 292
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 2ojhA00 A:16-292 TolB, C-terminal domain                                                                                                                                                                                                                                              CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeeee....eeeeeeee....eeeee.....eeeeee..eeeeee.......ee.............ee.....eeeeee.......eeeeee......ee......eeeeee.....eeeeeeee..eeeeeeee.....eee.......eeeeee.....eeeeee......eeeeee.....eee.....eeeeeeee.....eeeeeeee.........eeeeeeeee......eeeeeeee...............eeeeeee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2ojh A  16 GSmRSSIEIFNIRTRKmRVVWQTPELFEAPNWSPDGKYLLLNSEGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGTPRLmTKNLPSYWHGWSPDGKSFTYCGIRDQVFDIYSmDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQmQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLmDmDGGNVETLFDLFGGQGTmNSPNWSPDGDEFAYVRYFPV 292
                              |     25      | 35        45        55        65        75        85        95       105       115       125       135       145       155|      165       175       185       195       205       215       225       235       245      |255       265      |275       285       
                              |            32-MSE                                                                                    123-MSE                          156-MSE                                195-MSE                                                  252-MSE             272-MSE                
                             18-MSE                                                                                                                                                                                                                                     254-MSE
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2OJH)

(-) CATH Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2OJH)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 2OJH)

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