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(-) Description

Title :  CRYSTAL STRUCTURE OF ACETYLTRANSFERASE GNAT FAMILY (YP_013287.1) FROM LISTERIA MONOCYTOGENES 4B F2365 AT 1.46 A RESOLUTION
 
Authors :  Joint Center For Structural Genomics (Jcsg)
Date :  09 Jan 07  (Deposition) - 13 Feb 07  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.46
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  C  (1x)
Biol. Unit 4:  D  (1x)
Keywords :  Yp_013287. 1, Acetyltransferase Gnat Family, Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi-2, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of Acetyltransferase Gnat Family (Yp_013287. 1) From Listeria Monocytogenes 4B F2365 At 1. 46 Resolution
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - ACETYLTRANSFERASE, GNAT FAMILY
    Chains: A, B, C, D
    EC Number: 2.3.-.-
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: SPEEDET
    Expression System Strain: HK100
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: YP_013287.1, LMOF2365_0683
    Organism Scientific: LISTERIA MONOCYTOGENES STR. 4B
    Organism Taxid: 265669
    Strain: F2365

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): A   
Biological Unit 2 (1x):  B  
Biological Unit 3 (1x):   C 
Biological Unit 4 (1x):    D

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 34)

Asymmetric Unit (3, 34)
No.NameCountTypeFull Name
1EDO7Ligand/Ion1,2-ETHANEDIOL
2MSE24Mod. Amino AcidSELENOMETHIONINE
3UNL3Ligand/IonUNKNOWN LIGAND
Biological Unit 1 (3, 9)
No.NameCountTypeFull Name
1EDO2Ligand/Ion1,2-ETHANEDIOL
2MSE6Mod. Amino AcidSELENOMETHIONINE
3UNL1Ligand/IonUNKNOWN LIGAND
Biological Unit 2 (3, 8)
No.NameCountTypeFull Name
1EDO1Ligand/Ion1,2-ETHANEDIOL
2MSE6Mod. Amino AcidSELENOMETHIONINE
3UNL1Ligand/IonUNKNOWN LIGAND
Biological Unit 3 (2, 9)
No.NameCountTypeFull Name
1EDO3Ligand/Ion1,2-ETHANEDIOL
2MSE6Mod. Amino AcidSELENOMETHIONINE
3UNL-1Ligand/IonUNKNOWN LIGAND
Biological Unit 4 (3, 8)
No.NameCountTypeFull Name
1EDO1Ligand/Ion1,2-ETHANEDIOL
2MSE6Mod. Amino AcidSELENOMETHIONINE
3UNL1Ligand/IonUNKNOWN LIGAND

(-) Sites  (10, 10)

Asymmetric Unit (10, 10)
No.NameEvidenceResiduesDescription
01AC1SOFTWARELEU A:29 , ASP A:32 , THR A:33 , TRP A:36 , ILE A:108 , MSE A:109 , VAL A:110 , SER A:111 , ARG A:112 , SER A:115 , GLY A:116 , ILE A:117 , SER A:118 , LEU A:119 , SER A:120 , HOH A:225 , HOH A:226 , HOH A:250 , HOH A:277 , HOH A:383 , ASP D:96 , HOH D:338BINDING SITE FOR RESIDUE UNL A 179
02AC2SOFTWARETRP B:36BINDING SITE FOR RESIDUE UNL B 179
03AC3SOFTWARETRP D:36 , LEU D:37BINDING SITE FOR RESIDUE UNL D 179
04AC4SOFTWAREPHE C:17 , ALA C:18 , ALA C:19BINDING SITE FOR RESIDUE EDO C 179
05AC5SOFTWAREPHE A:161 , GLU B:62 , HOH B:338 , HOH B:354BINDING SITE FOR RESIDUE EDO B 180
06AC6SOFTWARELEU C:93 , TRP C:94 , GLU C:95 , LYS C:164 , LEU C:170 , HOH C:359 , HOH C:378BINDING SITE FOR RESIDUE EDO C 180
07AC7SOFTWARELYS D:84 , PRO D:86 , ASP D:100 , ALA D:102 , HOH D:315BINDING SITE FOR RESIDUE EDO D 180
08AC8SOFTWAREVAL A:155 , HOH A:182 , HOH B:276BINDING SITE FOR RESIDUE EDO A 180
09AC9SOFTWARESER A:118 , LYS A:121 , ARG A:156 , TYR A:157 , HOH A:315BINDING SITE FOR RESIDUE EDO A 181
10BC1SOFTWAREGLY C:116 , SER C:118 , LEU C:119 , SER C:120 , HOH C:197 , HOH C:263 , HOH C:310 , HOH C:377BINDING SITE FOR RESIDUE EDO C 181

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2OH1)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2OH1)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2OH1)

(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

(no "Exon" information available for 2OH1)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:175
                                                                                                                                                                                                               
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 2oh1A00 A:4-178  [code=3.40.630.30, no name defined]                                                                                                                            CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee..eeeeeee.hhhhhhhhhhhhhhhhhhhhhh...hhhhhhhh....hhhhhhhh..eeeee.....eeeeeeee...hhhhhhhhhhhh...eeeeeeeee.hhhh..hhhhhhhhhhhhhhhhh...eeeeeee..hhhhhhhhhhh..eeeeee..eeeeeee.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2oh1 A   4 NKITAGGLEFLVRFAAPTDRLKINDLmIDTARWLKESGSTQWSDILHGFDVHNIEQRIELGEVALFETEAGALAGAmIIRKTPSDWDTDLWEDLAIDKAYYLHRImVSRAFSGISLSKQmIYFAEKLGIEmSVPFIRLDCIESNETLNQmYVRYGFQFSGKKNGFYLYQKELSQK 178
                                    13        23      | 33        43        53        63        73      | 83        93       103     | 113       123       133|      143       153       163       173     
                                                     30-MSE                                            80-MSE                      109-MSE       123-MSE    134-MSE            153-MSE                     


Chain B from PDB  Type:PROTEIN  Length:174
                                                                                                                                                                                                              
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains 2oh1B00 B:3-176  [code=3.40.630.30, no name defined]                                                                                                                           CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeee..eeeeeee.hhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhh.hhhhhhhhhhh..eeeeee....eeeeeeee...hhhhhhhhhhhhhh.eeeeeeeee.hhhh..hhhhhhhhhhhhhhhhhh..eeeeeee..hhhhhhhhhhh..eeeeee..eeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2oh1 B   3 QNKITAGGLEFLVRFAAPTDRLKINDLmIDTARWLKESGSTQWSDILHGFDVHNIEQRIELGEVALFETEAGALAGAmIIRKTPSDWDTDLWEDLAIDKAYYLHRImVSRAFSGISLSKQmIYFAEKLGIEmSVPFIRLDCIESNETLNQmYVRYGFQFSGKKNGFYLYQKELS 176
                                    12        22       |32        42        52        62        72       |82        92       102      |112       122|      132 |     142       152|      162       172    
                                                      30-MSE                                            80-MSE                      109-MSE       123-MSE    134-MSE            153-MSE                   


Chain C from PDB  Type:PROTEIN  Length:172
                                                                                                                                                                                                            
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 2oh1C00 C:4-175  [code=3.40.630.30, no name defined]                                                                                                                         CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee..eeeeeee.hhhhhhhhhhhhhhhhhhhhhh...hhhhhhhh....hhhhhhhh..eeeee.....eeeeeeee...hhhhhhhhhhhhhh.eeeeeeeee.hhhh..hhhhhhhhhhhhhhhhh...eeeeeee..hhhhhhhhhhh..eeeeee..eeeeeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2oh1 C   4 NKITAGGLEFLVRFAAPTDRLKINDLmIDTARWLKESGSTQWSDILHGFDVHNIEQRIELGEVALFETEAGALAGAmIIRKTPSDWDTDLWEDLAIDKAYYLHRImVSRAFSGISLSKQmIYFAEKLGIEmSVPFIRLDCIESNETLNQmYVRYGFQFSGKKNGFYLYQKEL 175
                                    13        23      | 33        43        53        63        73      | 83        93       103     | 113       123       133|      143       153       163       173  
                                                     30-MSE                                            80-MSE                      109-MSE       123-MSE    134-MSE            153-MSE                  


Chain D from PDB  Type:PROTEIN  Length:174
                                                                                                                                                                                                              
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains 2oh1D00 D:3-176  [code=3.40.630.30, no name defined]                                                                                                                           CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeee..eeeeeee.hhhhhhhhhhhhhhhhhhhhhh...hhhhhhhh....hhhhhhhh..eeeeee....eeeeeeee...hhhhhhhhhhhhhh.eeeeeeeee.hhhh..hhhhhhhhhhhhhhhhh...eeeeeee..hhhhhhhhhhhh.eeeeee..eeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2oh1 D   3 QNKITAGGLEFLVRFAAPTDRLKINDLmIDTARWLKESGSTQWSDILHGFDVHNIEQRIELGEVALFETEAGALAGAmIIRKTPSDWDTDLWEDLAIDKAYYLHRImVSRAFSGISLSKQmIYFAEKLGIEmSVPFIRLDCIESNETLNQmYVRYGFQFSGKKNGFYLYQKELS 176
                                    12        22       |32        42        52        62        72       |82        92       102      |112       122|      132 |     142       152|      162       172    
                                                      30-MSE                                            80-MSE                      109-MSE       123-MSE    134-MSE            153-MSE
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2OH1)

(-) CATH Domains  (1, 4)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2OH1)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
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