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(-) Description

Title :  CRYSTAL STRUCTURE OF PUTATIVE XRE-FAMILY TRANSCRIPTIONAL REGULATOR FROM RHODOCOCCUS SP.
 
Authors :  I. A. Shumilin, T. Skarina, O. Onopriyenko, V. Yim, M. Chruszcz, M. Cymb A. Savchenko, A. Edwards, A. Joachimiak, W. Minor, Midwest Center F Structural Genomics (Mcsg)
Date :  04 Jan 07  (Deposition) - 16 Jan 07  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.70
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Transcription Regulator, Xre-Family, Structural Genomics, Psi, Protein Structure Initiative, Midwest Center For Structural Genomics, Mcsg, Transcription (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  I. A. Shumilin, T. Skarina, O. Onopriyenko, V. Yim, M. Chruszcz, M. Cymborowski, A. Savchenko, A. Edwards, A. Joachimiak, W. Minor
Crystal Structure Of Putative Xre-Family Transcriptional Regulator From Rhodococcus Sp.
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - PUTATIVE XRE-FAMILY TRANSCRIPTIONAL REGULATOR
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: P15TV
    Expression System Strain: BL21-CODONPLUS(DE3)-RP
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: RHA1_RO04071
    Organism Scientific: RHODOCOCCUS SP.
    Organism Taxid: 101510
    Strain: RHA1

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 4)

Asymmetric/Biological Unit (1, 4)
No.NameCountTypeFull Name
1MSE4Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (0, 0)

(no "Site" information available for 2OFY)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2OFY)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Val A:83 -Ser A:84
2Val B:83 -Ser B:84

 Sequence-Structure Mapping

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(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:82
 aligned with Q0S9B8_RHOJR | Q0S9B8 from UniProtKB/TrEMBL  Length:86

    Alignment length:82
                                    12        22        32        42        52        62        72        82  
          Q0S9B8_RHOJR    3 RVPLTAEELERGQRLGELLRSARGDMSMVTVAFDAGISVETLRKIETGRIATPAFFTIAAVARVLDLSLDDVAAVVTFGPVS 84
               SCOP domains d2ofya1 A:3-84 Putative transcriptional regulator RHA1_ro04071                     SCOP domains
               CATH domains ----2ofyA01 A:7-76 lambda repressor-like DNA-binding domains              -------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhhhhhhh..hhhhhhhhhh.hhhhhhhhhh......hhhhhhhhhhhh..hhhhhhh........ Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------- Transcript
                  2ofy A  3 RVPLTAEELERGQRLGELLRSARGDmSmVTVAFDAGISVETLRKIETGRIATPAFFTIAAVARVLDLSLDDVAAVVTFGPVS 84
                                    12        22     | |32        42        52        62        72        82  
                                                    28-MSE                                                    
                                                      30-MSE                                                  


Chain B from PDB  Type:PROTEIN  Length:80
 aligned with Q0S9B8_RHOJR | Q0S9B8 from UniProtKB/TrEMBL  Length:86

    Alignment length:80
                                    14        24        34        44        54        64        74        84
          Q0S9B8_RHOJR    5 PLTAEELERGQRLGELLRSARGDMSMVTVAFDAGISVETLRKIETGRIATPAFFTIAAVARVLDLSLDDVAAVVTFGPVS 84
               SCOP domains d2ofyb_ B: Putative transcriptional regulator RHA1_ro04071                       SCOP domains
               CATH domains --2ofyB01 B:7-76 lambda repressor-like DNA-binding domains              -------- CATH domains
               Pfam domains -------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhh..hhhhhhhhhh.hhhhhhhhhh......hhhhhhhhhhhhh.hhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------- Transcript
                  2ofy B  5 PLTAEELERGQRLGELLRSARGDmSmVTVAFDAGISVETLRKIETGRIATPAFFTIAAVARVLDLSLDDVAAVVTFGPVS 84
                                    14        24   | |  34        44        54        64        74        84
                                                  28-MSE                                                    
                                                    30-MSE
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Class: All alpha proteins (14657)

(-) CATH Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Class: Mainly Alpha (13335)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2OFY)

(-) Gene Ontology  (2, 2)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B   (Q0S9B8_RHOJR | Q0S9B8)
molecular function
    GO:0003677    DNA binding    Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
    GO:0043565    sequence-specific DNA binding    Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding.

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