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(-)Asym./Biol. Unit
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(-) Description

Authors :  C. Davies
Date :  04 Jan 07  (Deposition) - 29 May 07  (Release) - 13 Jul 11  (Revision)
Resolution :  2.12
Chains :  Asym./Biol. Unit :  A
Keywords :  Complement Inhibitor, Signaling Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google))
Reference :  Y. Huang, A. Fedarovich, S. Tomlinson, C. Davies
Crystal Structure Of Cd59: Implications For Molecular Recognition Of The Complement Proteins C8 And C9 In The Membrane-Attack Complex.
Acta Crystallogr. , Sect. D V. 63 714 2007
PubMed-ID: 17505110  |  Reference-DOI: 10.1107/S0907444907015557

(-) Compounds

Molecule 1 - CD59 GLYCOPROTEIN
    Expression SystemPICHIA PASTORIS
    Expression System PlasmidPPICZALPHAA
    Expression System StrainSMD1168H
    Expression System Taxid4922
    Expression System Vector TypePLASMID
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606

 Structural Features

(-) Chains, Units

Asymmetric/Biological Unit A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 2OFS)

(-) Sites  (0, 0)

(no "Site" information available for 2OFS)

(-) SS Bonds  (5, 5)

Asymmetric/Biological Unit
1A:3 -A:26
2A:6 -A:13
3A:19 -A:39
4A:45 -A:63
5A:64 -A:69

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2OFS)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (1, 1)

Asymmetric/Biological Unit (1, 1)
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_070124C89YCD59_HUMANDisease (HACD59)397514767AC64Y

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

(-) PROSITE Motifs  (1, 1)

Asymmetric/Biological Unit (1, 1)
1LY6_UPARPS00983 Ly-6 / u-PAR domain signature.CD59_HUMAN27-70  1A:2-45

(-) Exons   (2, 2)

Asymmetric/Biological Unit (2, 2)
No.Transcript IDExonExon IDGenome LocationLengthIDLocationLengthCountLocationLength

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:75
 aligned with CD59_HUMAN | P13987 from UniProtKB/Swiss-Prot  Length:128

    Alignment length:90
                                    19        29        39        49        59        69        79        89        99
               SCOP domains d               2ofsa_ A: CD59                                                             SCOP domains
               CATH domains 2               ofsA00 A:0-74 CD59                                                         CATH domains
               Pfam domains ------------------UPAR_LY6-2ofsA01 A:3-70                                             ---- Pfam domains
         Sec.struct. author .---------------.eee...........eee......eeeeeee..eeeeeeehhhhhhhhhhhhhhh....eeeee.......... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------Y---------- SAPs(SNPs)
                    PROSITE -----------------LY6_UPAR  PDB: A:2-45 UniProt: 27-70        ----------------------------- PROSITE
           Transcript 1 (1) Exon 1.5e     ---------------------------------Exon 1.8l  PDB: A:32-74 UniProt: 57-128     Transcript 1 (1)
           Transcript 1 (2) -------------Exon 1.6b  PDB: A:1-32 [INCOMPLETE]------------------------------------------ Transcript 1 (2)
                            |        -      |  4        14        24        34        44        54        64        74
                            |               1                                                                         

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  - → Gap (green background, '-', border residues have a numbering label)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric/Biological Unit

(-) CATH Domains  (1, 1)

Asymmetric/Biological Unit
Class: Mainly Beta (13760)

(-) Pfam Domains  (1, 1)

Asymmetric/Biological Unit

(-) Gene Ontology  (27, 27)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (CD59_HUMAN | P13987)
molecular function
    GO:0001848    complement binding    Interacting selectively and non-covalently with any component or product of the complement cascade.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
biological process
    GO:0048208    COPII vesicle coating    The addition of COPII proteins and adaptor proteins to ER membranes during the formation of transport vesicles, forming a vesicle coat.
    GO:0006888    ER to Golgi vesicle-mediated transport    The directed movement of substances from the endoplasmic reticulum (ER) to the Golgi, mediated by COP II vesicles. Small COP II coated vesicles form from the ER and then fuse directly with the cis-Golgi. Larger structures are transported along microtubules to the cis-Golgi.
    GO:0007596    blood coagulation    The sequential process in which the multiple coagulation factors of the blood interact, ultimately resulting in the formation of an insoluble fibrin clot; it may be divided into three stages: stage 1, the formation of intrinsic and extrinsic prothrombin converting principle; stage 2, the formation of thrombin; stage 3, the formation of stable fibrin polymers.
    GO:0001775    cell activation    A change in the morphology or behavior of a cell resulting from exposure to an activating factor such as a cellular or soluble ligand.
    GO:0007166    cell surface receptor signaling pathway    A series of molecular signals initiated by activation of a receptor on the surface of a cell. The pathway begins with binding of an extracellular ligand to a cell surface receptor, or for receptors that signal in the absence of a ligand, by ligand-withdrawal or the activity of a constitutively active receptor. The pathway ends with regulation of a downstream cellular process, e.g. transcription.
    GO:0001971    negative regulation of activation of membrane attack complex    Any process that stops, prevents, or reduces the frequency, rate or extent of the activation of the membrane attack complex components of the complement cascade.
    GO:0043066    negative regulation of apoptotic process    Any process that stops, prevents, or reduces the frequency, rate or extent of cell death by apoptotic process.
    GO:0042102    positive regulation of T cell proliferation    Any process that activates or increases the rate or extent of T cell proliferation.
    GO:0030449    regulation of complement activation    Any process that modulates the frequency, rate or extent of complement activation.
cellular component
    GO:0012507    ER to Golgi transport vesicle membrane    The lipid bilayer surrounding a vesicle transporting substances from the endoplasmic reticulum to the Golgi.
    GO:0000139    Golgi membrane    The lipid bilayer surrounding any of the compartments of the Golgi apparatus.
    GO:0031362    anchored component of external side of plasma membrane    The component of the plasma membrane consisting of the gene products that are tethered to the external side of the membrane only by a covalently attached anchor, such as a lipid group embedded in the membrane. Gene products with peptide sequences that are embedded in the membrane are excluded from this grouping.
    GO:0031225    anchored component of membrane    The component of a membrane consisting of the gene products that are tethered to the membrane only by a covalently attached anchor, such as a lipid group that is embedded in the membrane. Gene products with peptide sequences that are embedded in the membrane are excluded from this grouping.
    GO:0009986    cell surface    The external part of the cell wall and/or plasma membrane.
    GO:0043218    compact myelin    The portion of the myelin sheath in which layers of cell membrane are tightly juxtaposed, completely excluding cytoplasm. The juxtaposed cytoplasmic surfaces form the major dense line, while the juxtaposed extracellular surfaces form the interperiod line visible in electron micrographs.
    GO:0005789    endoplasmic reticulum membrane    The lipid bilayer surrounding the endoplasmic reticulum.
    GO:0033116    endoplasmic reticulum-Golgi intermediate compartment membrane    The lipid bilayer surrounding any of the compartments of the endoplasmic reticulum (ER)-Golgi intermediate compartment system.
    GO:0070062    extracellular exosome    A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.
    GO:0005576    extracellular region    The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.
    GO:0005615    extracellular space    That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid.
    GO:0005925    focal adhesion    Small region on the surface of a cell that anchors the cell to the extracellular matrix and that forms a point of termination of actin filaments.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0005886    plasma membrane    The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.
    GO:0042383    sarcolemma    The outer membrane of a muscle cell, consisting of the plasma membrane, a covering basement membrane (about 100 nm thick and sometimes common to more than one fiber), and the associated loose network of collagen fibers.
    GO:0031982    vesicle    Any small, fluid-filled, spherical organelle enclosed by membrane.


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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

        CD59_HUMAN | P139871cdq 1cdr 1cds 1erg 1erh 2j8b 2uwr 2ux2 4bik 5imt 5imy

(-) Related Entries Specified in the PDB File

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