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(-) Description

Title :  THE CRYSTAL STRUCTURE OF SCLEROTIUM ROLFSII LECTIN IN COMPLEX WITH N-ACETYL-D-GLUCOSAMINE
 
Authors :  D. D. Leonidas, S. E. Zographos, N. G. Oikonomakos
Date :  03 Jan 07  (Deposition) - 01 May 07  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.70
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  A,B  (2x)
Keywords :  Lectin, Dual Specificity, Sugar Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  D. D. Leonidas, B. M. Swamy, G. N. Hatzopoulos, S. J. Gonchigar, V. B. Chachadi, S. R. Inamdar, S. E. Zographos, N. G. Oikonomakos
Structural Basis For The Carbohydrate Recognition Of The Sclerotium Rolfsii Lectin
J. Mol. Biol. V. 368 1145 2007
PubMed-ID: 17391699  |  Reference-DOI: 10.1016/J.JMB.2007.02.092

(-) Compounds

Molecule 1 - SCLEROTIUM ROLFSII LECTIN
    Chains: A, B
    Organism Scientific: ATHELIA ROLFSII
    Organism Taxid: 39291

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): AB
Biological Unit 2 (2x): AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 10)

Asymmetric Unit (4, 10)
No.NameCountTypeFull Name
1ACE2Mod. Amino AcidACETYL GROUP
2ACT3Ligand/IonACETATE ION
3MPD3Ligand/Ion(4S)-2-METHYL-2,4-PENTANEDIOL
4NAG2Ligand/IonN-ACETYL-D-GLUCOSAMINE
Biological Unit 1 (4, 10)
No.NameCountTypeFull Name
1ACE2Mod. Amino AcidACETYL GROUP
2ACT3Ligand/IonACETATE ION
3MPD3Ligand/Ion(4S)-2-METHYL-2,4-PENTANEDIOL
4NAG2Ligand/IonN-ACETYL-D-GLUCOSAMINE
Biological Unit 2 (4, 20)
No.NameCountTypeFull Name
1ACE4Mod. Amino AcidACETYL GROUP
2ACT6Ligand/IonACETATE ION
3MPD6Ligand/Ion(4S)-2-METHYL-2,4-PENTANEDIOL
4NAG4Ligand/IonN-ACETYL-D-GLUCOSAMINE

(-) Sites  (8, 8)

Asymmetric Unit (8, 8)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASP A:77 , ILE A:78 , VAL A:79 , THR A:80 , ASN A:100 , ARG A:101 , TYR A:112 , VAL A:114 , LYS A:115 , HOH A:1067 , HOH A:1072 , HOH A:1106 , HOH A:1140 , HOH A:1144BINDING SITE FOR RESIDUE NAG A 145
2AC2SOFTWAREASP B:77 , ILE B:78 , VAL B:79 , THR B:80 , ASN B:81 , ARG B:101 , TYR B:112 , VAL B:114 , LYS B:115 , HOH B:1041 , HOH B:1076 , HOH B:1081 , HOH B:1145 , HOH B:1158 , HOH B:1159BINDING SITE FOR RESIDUE NAG B 145
3AC3SOFTWARESER A:97 , LYS A:118 , HOH A:1064BINDING SITE FOR RESIDUE ACT A 993
4AC4SOFTWARETYR A:72 , ARG B:74 , HOH B:1097BINDING SITE FOR RESIDUE ACT B 994
5AC5SOFTWAREASN B:14 , HOH B:1113BINDING SITE FOR RESIDUE ACT B 995
6AC6SOFTWARETYR A:126 , THR A:127 , SER B:47 , GLY B:48 , HIS B:70 , ASN B:71 , TYR B:72 , HOH B:1087BINDING SITE FOR RESIDUE MPD B 996
7AC7SOFTWAREHOH A:1174 , HOH A:1175 , ALA B:28 , ASN B:29 , GLY B:45 , HOH B:1103BINDING SITE FOR RESIDUE MPD B 997
8AC8SOFTWAREASN A:111 , HOH A:1095 , HOH A:1138 , ALA B:28 , SER B:47 , HOH B:1149BINDING SITE FOR RESIDUE MPD B 998

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2OFE)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2OFE)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2OFE)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2OFE)

(-) Exons   (0, 0)

(no "Exon" information available for 2OFE)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:142
                                                                                                                                                                              
               SCOP domains d2ofea_ A: automated matches                                                                                                                   SCOP domains
               CATH domains -2ofeA00 A:1-141  [code=2.60.270.20, no name defined]                                                                                          CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeeee......eeeeeeee......eeeeee..eeeeee.....eeeeeeee....eeeeeeeee..eeeeeeee......hhhhhhhhh..hhhhhhhhhh...eeeee.....eeeeeeee....eeeeeeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2ofe A   0 xTYKITVRVYQTNPNAFFHPVEKTVWKYANGGTWTITDDQHVLTMGGSGTSGTLRFHADNGESFTATFGVHNYKRWCDIVTNLAADETGMVINQQYYSQKNREEARERQLSNYEVKNAKGRNFEIVYTEAEGNDLHANLIIG 141
                            |        9        19        29        39        49        59        69        79        89        99       109       119       129       139  
                            |                                                                                                                                             
                            0-ACE                                                                                                                                         


Chain B from PDB  Type:PROTEIN  Length:142
                                                                                                                                                                              
               SCOP domains d2ofeb_ B: automated matches                                                                                                                   SCOP domains
               CATH domains -2ofeB00 B:1-141  [code=2.60.270.20, no name defined]                                                                                          CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeeee......eeeeeeee......eeeeee..eeeeee.....eeeeeeee....eeeeeeeee..eeeeeeee......hhhhhhhhh..hhhhhhhhhh...eeeee.....eeeeeeee....eeeeeeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2ofe B   0 xTYKITVRVYQTNPNAFFHPVEKTVWKYANGGTWTITDDQHVLTMGGSGTSGTLRFHADNGESFTATFGVHNYKRWCDIVTNLAADETGMVINQQYYSQKNREEARERQLSNYEVKNAKGRNFEIVYTEAEGNDLHANLIIG 141
                            |        9        19        29        39        49        59        69        79        89        99       109       119       129       139  
                            0-ACE
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric Unit
(-)
Class: All beta proteins (24004)

(-) CATH Domains  (1, 2)

Asymmetric Unit
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2OFE)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 2OFE)

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(-) Related Entries Specified in the PDB File

2ofc THE FREE STRUCTURE OF SRL
2ofd THE STRUCTURE OF SRL IN COMPLEX WITH N-ACETYL-D- GALACTOSAMINE