2OFC - JenaLib

Title :   THE CRYSTAL STRUCTURE OF SCLEROTIUM ROLFSII LECTIN

Authors :   D. D. Leonidas, S. E. Zographos, N. G. Oikonomakos

Date :   03 Jan 07 (Deposition) - 01 May 07 (Release) - 24 Feb 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.11

Chains :   Asym. Unit : A,B
Biol. Unit 1: A,B  (1x)
Biol. Unit 2: A,B  (2x)
Biol. Unit 3: A (2x),B (2x)
Biol. Unit 4: A (1x),B (1x)

Keywords :   Lectin, Dual Specificity, Sugar Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   D. D. Leonidas, B. M. Swamy, G. N. Hatzopoulos, S. J. Gonchigar, V. B. Chachadi, S. R. Inamdar, S. E. Zographos, N. G. Oikonomakos
Structural Basis For The Carbohydrate Recognition Of The Sclerotium Rolfsii Lectin
J. Mol. Biol. V. 368 1145 2007
PubMed-ID: 17391699 | Reference-DOI: 10.1016/J.JMB.2007.02.092
(for further references see the PDB file header)

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (4, 8)

Asymmetric Unit (4, 8)

No.	Name	Count	Type	Full Name
1	ACE	2	Mod. Amino Acid	ACETYL GROUP
2	ACT	2	Ligand/Ion	ACETATE ION
3	MPD	3	Ligand/Ion	(4S)-2-METHYL-2,4-PENTANEDIOL
4	TRS	1	Ligand/Ion	2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL

Biological Unit 1 (4, 8)

No.	Name	Count	Type	Full Name
1	ACE	2	Mod. Amino Acid	ACETYL GROUP
2	ACT	2	Ligand/Ion	ACETATE ION
3	MPD	3	Ligand/Ion	(4S)-2-METHYL-2,4-PENTANEDIOL
4	TRS	1	Ligand/Ion	2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL

Biological Unit 2 (4, 16)

No.	Name	Count	Type	Full Name
1	ACE	4	Mod. Amino Acid	ACETYL GROUP
2	ACT	4	Ligand/Ion	ACETATE ION
3	MPD	6	Ligand/Ion	(4S)-2-METHYL-2,4-PENTANEDIOL
4	TRS	2	Ligand/Ion	2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL

Biological Unit 3 (3, 10)

No.	Name	Count	Type	Full Name
1	ACE	2	Mod. Amino Acid	ACETYL GROUP
2	ACT	4	Ligand/Ion	ACETATE ION
3	MPD	4	Ligand/Ion	(4S)-2-METHYL-2,4-PENTANEDIOL
4	TRS	-1	Ligand/Ion	2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL

Biological Unit 4 (3, 5)

No.	Name	Count	Type	Full Name
1	ACE	1	Mod. Amino Acid	ACETYL GROUP
2	ACT	2	Ligand/Ion	ACETATE ION
3	MPD	2	Ligand/Ion	(4S)-2-METHYL-2,4-PENTANEDIOL
4	TRS	-1	Ligand/Ion	2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL

Sites (6, 6)

Asymmetric Unit (6, 6)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	ASN B:14 , HOH B:1201	BINDING SITE FOR RESIDUE ACT B 995
2	AC2	SOFTWARE	ARG B:74 , ALA B:129 , HOH B:1070 , HOH B:1146 , HOH B:1224	BINDING SITE FOR RESIDUE ACT B 996
3	AC3	SOFTWARE	ASP A:77 , ILE A:78 , VAL A:79 , ARG A:101 , TYR A:112 , HOH A:1026 , HOH A:1063 , HOH A:1067	BINDING SITE FOR RESIDUE TRS A 994
4	AC4	SOFTWARE	ALA B:28 , ASN B:29 , GLY B:45 , HOH B:1038 , HOH B:1039 , HOH B:1220 , HOH B:1228	BINDING SITE FOR RESIDUE MPD B 997
5	AC5	SOFTWARE	TYR A:126 , THR A:127 , HOH A:1034 , SER B:47 , GLY B:48 , HIS B:70 , ASN B:71 , TYR B:72	BINDING SITE FOR RESIDUE MPD A 998
6	AC6	SOFTWARE	ASN A:111 , HOH A:1088 , TYR B:27 , ALA B:28 , SER B:47 , HOH B:1035 , HOH B:1228	BINDING SITE FOR RESIDUE MPD B 999

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
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Chain A from PDB  Type:PROTEIN  Length:142
                                                                                                                                                                              
               SCOP domains d2ofca_ A: automated matches                                                                                                                   SCOP domains
               CATH domains -2ofcA00 A:1-141  [code=2.60.270.20, no name defined]                                                                                          CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeeee......eeeeeeee......eeeeee..eeeeee.....eeeeeeee....eeeeeeeee..eeeeeeee......hhhhhhhhh..hhhhhhhhhh...eeeee.....eeeeeeee....eeeeeeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2ofc A   0 xTYKITVRVYQTNPNAFFHPVEKTVWKYANGGTWTITDDQHVLTMGGSGTSGTLRFHADNGESFTATFGVHNYKRWCDIVTNLAADETGMVINQQYYSQKNREEARERQLSNYEVKNAKGRNFEIVYTEAEGNDLHANLIIG 141
                            |        9        19        29        39        49        59        69        79        89        99       109       119       129       139  
                            |                                                                                                                                             
                            0-ACE

Chain B from PDB  Type:PROTEIN  Length:142
                                                                                                                                                                              
               SCOP domains d2ofcb_ B: automated matches                                                                                                                   SCOP domains
               CATH domains -2ofcB00 B:1-141  [code=2.60.270.20, no name defined]                                                                                          CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeeee......eeeeeeee......eeeeee..eeeeee.....eeeeeeee....eeeeeeeee..eeeeeeee......hhhhhhhhh..hhhhhhhhhh...eeeee.....eeeeeeee....eeeeeeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2ofc B   0 xTYKITVRVYQTNPNAFFHPVEKTVWKYANGGTWTITDDQHVLTMGGSGTSGTLRFHADNGESFTATFGVHNYKRWCDIVTNLAADETGMVINQQYYSQKNREEARERQLSNYEVKNAKGRNFEIVYTEAEGNDLHANLIIG 141
                            |        9        19        29        39        49        59        69        79        89        99       109       119       129       139  
                            0-ACE

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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (1, 2)

CATH Domains (1, 2)

Pfam Domains (0, 0)

Gene Ontology (0, 0)

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Biological Units
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