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(-) Description

Title :  CRYSTAL STRUCTURE OF S. AUREUS YLAN, AN ESSENTIAL LEUCINE RICH PROTEIN INVOLVED IN THE CONTROL OF CELL SHAPE
 
Authors :  L. Xu, S. E. Sedelnikova, P. J. Baker, J. Errington, A. Hunt, D. W. Rice
Date :  23 Dec 06  (Deposition) - 05 Jun 07  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.24
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Triple Helix, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  L. Xu, S. E. Sedelnikova, P. J. Baker, A. Hunt, J. Errington, D. W. Rice
Crystal Structure Of S. Aureus Ylan, An Essential Leucine Rich Protein Involved In The Control Of Cell Shape.
Proteins V. 68 438 2007
PubMed-ID: 17469204  |  Reference-DOI: 10.1002/PROT.21377

(-) Compounds

Molecule 1 - UPF0358 PROTEIN MW0995
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PETBLUE1
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: YLAN
    Organism Scientific: STAPHYLOCOCCUS AUREUS SUBSP. AUREUS
    Organism Taxid: 196620
    Strain: MW2
    Synonym: YLAN

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 6)

Asymmetric/Biological Unit (1, 6)
No.NameCountTypeFull Name
1MSE6Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (0, 0)

(no "Site" information available for 2ODM)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2ODM)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Cys A:38 -Pro A:39
2His A:85 -Glu A:86

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2ODM)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2ODM)

(-) Exons   (0, 0)

(no "Exon" information available for 2ODM)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:79
 aligned with Y995_STAAW | Q7A161 from UniProtKB/Swiss-Prot  Length:91

    Alignment length:83
                                    14        24        34        44        54        64        74        84   
            Y995_STAAW    5 ATMKNAALKQLTKDADEILHLIKVQLDNLTLPSCPLYEEVLDTQMFGLQKEVDFAVKLGLVDREDGKQIMLRLEKELSKLHEA 87
               SCOP domains d2odma_ A: automated matches                                                        SCOP domains
               CATH domains ----------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhh..----..hhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------- Transcript
                  2odm A  5 ATmKNAALKQLTKDADEILHLIKVQLDNL----CPLYEEVLDTQmFGLQKEVDFAVKLGLVDREDGKQImLRLEKELSKLHEA 87
                              |     14        24        |-   |    44    |   54        64        74        84   
                              |                        33   38         49-MSE                   74-MSE         
                              7-MSE                                                                            


Chain B from PDB  Type:PROTEIN  Length:83
 aligned with Y995_STAAW | Q7A161 from UniProtKB/Swiss-Prot  Length:91

    Alignment length:88
                                    13        23        33        43        53        63        73        83        
            Y995_STAAW    4 QATMKNAALKQLTKDADEILHLIKVQLDNLTLPSCPLYEEVLDTQMFGLQKEVDFAVKLGLVDREDGKQIMLRLEKELSKLHEAFTLV 91
               SCOP domains d2odmb_ B: automated matches                                                             SCOP domains
               CATH domains ---------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) DUF1507-2odmB01 B:4-91                                                                   Pfam domains (1)
           Pfam domains (2) DUF1507-2odmB02 B:4-91                                                                   Pfam domains (2)
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhh.-----.hhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------- Transcript
                  2odm B  4 QATmKNAALKQLTKDADEILHLIKVQLDN-----CPLYEEVLDTQmFGLQKEVDFAVKLGLVDREDGKQImLRLEKELSKLHEAFTLV 91
                               |    13        23        |-    |   43     |  53        63        73|       83        
                               7-MSE                   32    38         49-MSE                   74-MSE
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Class: All alpha proteins (14657)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2ODM)

(-) Pfam Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Clan: no clan defined [family: DUF1507] (1)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
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