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(-) Description

Title :  RESTRICTION ENDONUCLEASE BCNI IN THE ABSENCE OF DNA
 
Authors :  M. Sokolowska, M. Kaus-Drobek, H. Czapinska, G. Tamulaitis, R. H. Szczepanowski, Urbanke K. , V. Siksnys, M. Bochtler
Date :  22 Dec 06  (Deposition) - 20 Mar 07  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.60
Chains :  Asym./Biol. Unit :  A
Keywords :  Monomeric Endonuclease, Restriction Enzyme, Bcni, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. Sokolowska, M. Kaus-Drobek, H. Czapinska, G. Tamulaitis, R. H. Szczepanowski, C. Urbanke, V. Siksnys, M. Bochtler
Monomeric Restriction Endonuclease Bcni In The Apo Form And In An Asymmetric Complex With Target Dna.
J. Mol. Biol. V. 369 722 2007
PubMed-ID: 17445830  |  Reference-DOI: 10.1016/J.JMB.2007.03.018
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - R.BCNI
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: ER2267
    Expression System Taxid: 562
    Expression System Vector: PBAD24
    Expression System Vector Type: PLASMID
    Gene: BCNIR
    Organism Scientific: BREVIBACILLUS CENTROSPORUS
    Organism Taxid: 54910

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 2)

Asymmetric/Biological Unit (2, 2)
No.NameCountTypeFull Name
1ACT1Ligand/IonACETATE ION
2PEG1Ligand/IonDI(HYDROXYETHYL)ETHER

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELEU A:75 , LYS A:78 , ASP A:147 , LEU A:148 , ASN A:149BINDING SITE FOR RESIDUE ACT A 239
2AC2SOFTWAREPHE A:160 , ILE A:224 , HOH A:273BINDING SITE FOR RESIDUE PEG A 240

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2ODH)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2ODH)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2ODH)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2ODH)

(-) Exons   (0, 0)

(no "Exon" information available for 2ODH)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:233
 aligned with Q8RNV8_9BACL | Q8RNV8 from UniProtKB/TrEMBL  Length:238

    Alignment length:238
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230        
         Q8RNV8_9BACL     1 MKIWSKEEVVNKLHEIKNKGYLSVPTDMFRTDDGVVGQILERQFGVQENNITLGDLGEFELKGMRNRKAKSNLTLFHKKPVAGQTVIQIFNRFGYVKPSSRNPEVMKKKLFTTIKGGRLNNLGLTLNAKHASEINLYYQDEYLSTWDLNLSKIEKLVLVFAETIGRANSPEEQFHFTKAYMLTEINDITSLINDGVLVMDLCIDQDLSKSKGPHDRGPHLRIPISKLDKLYRNIERLL 238
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eehhhhhhhhhhhhhhh..ee..........hhhhhhhhhhhh....eeee...eeeeeeeee......eeeeee....ee.hhhhhhhhhheee.-----...eeeeeeeee........eeee.....eeeeee..eeeeeee.hhhhhh.eeeeeeeee........eeeeeeeeeeeee..hhhhhhh...eeeeeeeee.......ee...eeeee..hhhhheeeeee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2odh A   1 MKIWSKEEVVNKLHEIKNKGYLSVPTDMFRTDDGVVGQILERQFGVQENNITLGDLGEFELKGMRNRKAKSNLTLFHKKPVAGQTVIQIFNRFGYVKP-----EVMKKKLFTTIKGGRLNNLGLTLNAKHASEINLYYQDEYLSTWDLNLSKIEKLVLVFAETIGRANSPEEQFHFTKAYMLTEINDITSLINDGVLVMDLCIDQDLSKSKGPHDRGPHLRIPISKLDKLYRNIERLL 238
                                    10        20        30        40        50        60        70        80        90       | -   |   110       120       130       140       150       160       170       180       190       200       210       220       230        
                                                                                                                            98   104
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2ODH)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2ODH)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2ODH)

(-) Gene Ontology  (1, 1)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (Q8RNV8_9BACL | Q8RNV8)
molecular function
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q8RNV8_9BACL | Q8RNV8: 2odi 2q10 3imb

(-) Related Entries Specified in the PDB File

2odi RESTRICTION ENDONUCLEASE BCNI-COGNATE DNA SUBSTRATE COMPLEX