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(-) Description

Title :  UNCHARACTERIZED PROTEIN CONSERVED IN BACTERIA, COG3792 FROM NEISSERIA MENINGITIDIS
 
Authors :  Y. Kim, H. Li, M. Gu, M. Bargassa, A. Joachimiak, Midwest Center For S Genomics (Mcsg)
Date :  06 Dec 06  (Deposition) - 09 Jan 07  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.90
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Alpha-Beta, Structural Genomics, Psi-2, Protein Structure Initiative, Midwest Center For Structural Genomics, Mcsg, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Y. Kim, H. Li, M. Gu, M. Bargassa, A. Joachimiak
Uncharacterized Protein Conserved In Bacteria, Cog3792 From Neisseria Meningitidis
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - HYPOTHETICAL PROTEIN
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PMCSG7
    Expression System Strain: BL21DE3
    Expression System Taxid: 469008
    Expression System Vector: LIC
    Expression System Vector Type: PLASMID
    Gene: NMB0513
    Organism Scientific: NEISSERIA MENINGITIDIS
    Organism Taxid: 122586
    Strain: MC58
    Synonym: UNCHARACTERIZED CONSERVED PROTEIN COG3792 IN BACTERIA

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 3)

Asymmetric/Biological Unit (1, 3)
No.NameCountTypeFull Name
1MSE3Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (0, 0)

(no "Site" information available for 2O5H)

(-) SS Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1A:33 -B:33

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2O5H)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2O5H)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2O5H)

(-) Exons   (0, 0)

(no "Exon" information available for 2O5H)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:128
 aligned with Q9K0R7_NEIMB | Q9K0R7 from UniProtKB/TrEMBL  Length:133

    Alignment length:134
                               1                                                                                                                                  
                               |     7        17        27        37        47        57        67        77        87        97       107       117       127    
         Q9K0R7_NEIMB     - ---MRKLNNHDVHKRYQDRLEEDVEFTINYELPLSCLWSTIKDFSSDFEEKTEAFFILFKELLRRGHLKLQRDGQIIGHTPEEWEQIFREVWPEYEIEPNPLPGYAPFDIGMWLTVEAPAYAVWIDPEDGSEYW 131
               SCOP domains ---d2o5ha1 A:1-131 Hypothetical protein NMB0513                                                                                        SCOP domains
               CATH domains 2o5hA00 A:-2-131 NMB0513-like                                                                                                          CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhh.hhhhhhhhhhhhh.hhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhh..eeeee..ee...hhhhhhhhhhhhh........------..hhhhhhhhh...eeeee......ee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2o5h A  -2 SNAmRKLNNHDVHKRYQDRLEEDVEFTINYELPLSCLWSTIKDFSSDFEEKTEAFFILFKELLRRGHLKLQRDGQIIGHTPEEWEQIFREVWPEYEIEPN------PFDIGmWLTVEAPAYAVWIDPEDGSEYW 131
                               |     7        17        27        37        47        57        67        77        87        97      |107 |     117       127    
                               |                                                                                              97    104    |                      
                               1-MSE                                                                                                     109-MSE                  


Chain B from PDB  Type:PROTEIN  Length:118
 aligned with Q9K0R7_NEIMB | Q9K0R7 from UniProtKB/TrEMBL  Length:133

    Alignment length:118
                                    13        23        33        43        53        63        73        83        93       103       113        
         Q9K0R7_NEIMB     4 LNNHDVHKRYQDRLEEDVEFTINYELPLSCLWSTIKDFSSDFEEKTEAFFILFKELLRRGHLKLQRDGQIIGHTPEEWEQIFREVWPEYEIEPNPLPGYAPFDIGMWLTVEAPAYAVW 121
               SCOP domains d2o5hb_ B: Hypothetical protein NMB0513                                                                                SCOP domains
               CATH domains 2o5hB00 B:4-121 NMB0513-like                                                                                           CATH domains
           Pfam domains (1) --------------------------------------------------------DUF596-2o5hB01 B:60-121                                        Pfam domains (1)
           Pfam domains (2) --------------------------------------------------------DUF596-2o5hB02 B:60-121                                        Pfam domains (2)
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhh..eeee..eee..hhhhhhhhhhhhh....ee.........eehhhhhhhh...eee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------- Transcript
                 2o5h B   4 LNNHDVHKRYQDRLEEDVEFTINYELPLSCLWSTIKDFSSDFEEKTEAFFILFKELLRRGHLKLQRDGQIIGHTPEEWEQIFREVWPEYEIEPNPLPGYAPFDIGmWLTVEAPAYAVW 121
                                    13        23        33        43        53        63        73        83        93       103     | 113        
                                                                                                                                   109-MSE
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Class: Mainly Alpha (13335)

(-) Pfam Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Clan: no clan defined [family: DUF596] (1)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 2O5H)

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