2O57 - JenaLib

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Title :   CRYSTAL STRUCTURE OF A PUTATIVE SARCOSINE DIMETHYLGLYCINE METHYLTRANSFERASE FROM GALDIERIA SULPHURARIA

Authors :   J. G. Mccoy, G. E. Wesenberg, G. N. Phillips Jr. , E. Bitto, C. A. Bingman, Center For Eukaryotic Structural Genomics (Cesg

Date :   05 Dec 06 (Deposition) - 19 Dec 06 (Release) - 24 Feb 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.95

Chains :   Asym. Unit : A,B,C,D
Biol. Unit 1: A,B  (1x)
Biol. Unit 2: C,D  (1x)

Keywords :   Structural Genomics, Protein Structure Initiative, Psi-2, Center For Eukaryotic Structural Genomics, Cesg, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   J. G. Mccoy, G. E. Wesenberg, G. N. Phillips Jr. , E. Bitto, C. A. Bingman
Crystal Structure Of A Putative Sarcosine Dimethylglycine Methyltransferase From Galdieria Sulphuraria
To Be Published
PubMed: search
(for further references see the PDB file header)

Molecule 1 - PUTATIVE SARCOSINE DIMETHYLGLYCINE METHYLTRANSFERASE
	Chains	:	A, B, C, D
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PVP 16
	Expression System Strain	:	B834 P(RARE2)
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Gene	:	C1006_101305G20.T1 (MSU_GALDI)
	Organism Scientific	:	GALDIERIA SULPHURARIA
	Organism Taxid	:	130081

		1	2	3	4
Asymmetric Unit	:	A	B	C	D
Biological Unit 1 (1x)	:	A	B
Biological Unit 2 (1x)	:			C	D

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (1, 24)

No.	Name	Count	Type	Full Name
1	MSE	24	Mod. Amino Acid	SELENOMETHIONINE

Biological Unit 1 (1, 12)

No.	Name	Count	Type	Full Name
1	MSE	12	Mod. Amino Acid	SELENOMETHIONINE

Biological Unit 2 (1, 12)

No.	Name	Count	Type	Full Name
1	MSE	12	Mod. Amino Acid	SELENOMETHIONINE

(no "Site" information available for 2O57)

(no "SS Bond" information available for 2O57)

Asymmetric Unit

No.	Residues
1	Glu A:52	-	Pro A:53
2	Glu B:52	-	Pro B:53
3	Glu C:52	-	Pro C:53
4	Glu D:52	-	Pro D:53

(no "SAP(SNP)/Variant" information available for 2O57)

(no "PROSITE Motif" information available for 2O57)

(no "Exon" information available for 2O57)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:282
                                                                                                                                                                                                                                                                                                                          
               SCOP domains d2o57a1 A:16-297 Putative sarcosine dimethylglycine methyltransferase                                                                                                                                                                                                                      SCOP domains
               CATH domains -2o57A01 A:17-57,A:196-206,A:234-286      2o57A02 A:58-192,A:207-233,A:294-296 Vaccinia Virus protein VP39                                                                       ---2o57A01    2o57A02                    2o57A01 A:17-57,A:196-206,A:234-286                  -------2o5- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhh...........hhhhhhhhhhhhhhhhhhhhhhhhh.......eeeee....hhhhhhhhhhhh.eeeeee.hhhhhhhhhhhhhhhh....eeeee............eeeeeee.hhhhh.hhhhhhhhhhhheeeeeeeeeeeeee....hhhhhhhhhhhhh.....hhhhhhhhhhhh.eeeeeeeehhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhh..eeeeeeeeee.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2o57 A  16 SKTVKDNAEIYYDDDDSDRFYFHVWGGEDIHVGLYKEPVDQDEIREASLRTDEWLASELAmTGVLQRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPCEDNSYDFIWSQDAFLHSPDKLKVFQECARVLKPRGVmAITDPmKEDGIDKSSIQPILDRIKLHDmGSLGLYRSLAKECGLVTLRTFSRPDSLVHHYSKVKAELIKRSSEIASFCSPEFQANmKRGLEHWIEGGRAGKLTWGGmLFRKSDKI 297
                                    25        35        45        55        65        75|       85        95       105       115       125       135       145       155       165       175       185   |   195       205     | 215       225       235       245       255       265  |    275       285   |   295  
                                                                                       76-MSE                                                                                                    183-MSE |                   211-MSE                                                  268-MSE              289-MSE    
                                                                                                                                                                                                       189-MSE

Chain B from PDB  Type:PROTEIN  Length:273
                                                                                                                                                                                                                                                                                                                 
               SCOP domains d2o57b_ B: Putative sarcosine dimethylglycine methyltransferase                                                                                                                                                                                                                   SCOP domains
               CATH domains 2o57B00 B:25-297 Vaccinia Virus protein VP39                                                                                                                                                                                                                                      CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhh...........hhhhhhhhhhhhhhhhhhhhhhhhh.......eeeee....hhhhhhhhhhhh.eeeeee.hhhhhhhhhhhhhhhh....eeeee.hhhhh......eeeeeee.hhhhh.hhhhhhhhhhhheeeeeeeeeeeeee....hhhhhhhhhhhhh.....hhhhhhhhhhhh..eeeeeeehhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhh..eeeeeeeee..... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2o57 B  25 IYYDDDDSDRFYFHVWGGEDIHVGLYKEPVDQDEIREASLRTDEWLASELAmTGVLQRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPCEDNSYDFIWSQDAFLHSPDKLKVFQECARVLKPRGVmAITDPmKEDGIDKSSIQPILDRIKLHDmGSLGLYRSLAKECGLVTLRTFSRPDSLVHHYSKVKAELIKRSSEIASFCSPEFQANmKRGLEHWIEGGRAGKLTWGGmLFRKSDKI 297
                                    34        44        54        64        74 |      84        94       104       114       124       134       144       154       164       174       184    |  194       204      |214       224       234       244       254       264   |   274       284    |  294   
                                                                              76-MSE                                                                                                    183-MSE |                   211-MSE                                                  268-MSE              289-MSE    
                                                                                                                                                                                              189-MSE

Chain C from PDB  Type:PROTEIN  Length:272
                                                                                                                                                                                                                                                                                                                
               SCOP domains d2o57c_ C: Putative sarcosine dimethylglycine methyltransferase                                                                                                                                                                                                                  SCOP domains
               CATH domains 2o57C00 C:26-297 Vaccinia Virus protein VP39                                                                                                                                                                                                                                     CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhh...........hhhhhhhhhhhhhhhhhhhhhhhhh.......eeeee....hhhhhhhhhhhh.eeeeee.hhhhhhhhhhhhhhh.....eeeee............eeeeeee.hhhhh.hhhhhhhhhhhheeeeeeeeeeeeee....hhhhhhhhhhhhh.....hhhhhhhhhhhh.eeeeeeeehhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhh..eeeeeeeeee.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2o57 C  26 YYDDDDSDRFYFHVWGGEDIHVGLYKEPVDQDEIREASLRTDEWLASELAmTGVLQRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPCEDNSYDFIWSQDAFLHSPDKLKVFQECARVLKPRGVmAITDPmKEDGIDKSSIQPILDRIKLHDmGSLGLYRSLAKECGLVTLRTFSRPDSLVHHYSKVKAELIKRSSEIASFCSPEFQANmKRGLEHWIEGGRAGKLTWGGmLFRKSDKI 297
                                    35        45        55        65        75|       85        95       105       115       125       135       145       155       165       175       185   |   195       205     | 215       225       235       245       255       265  |    275       285   |   295  
                                                                             76-MSE                                                                                                    183-MSE |                   211-MSE                                                  268-MSE              289-MSE    
                                                                                                                                                                                             189-MSE

Chain D from PDB  Type:PROTEIN  Length:265
                                                                                                                                                                                                                                                                                                         
               SCOP domains d2o57d_ D: Putative sarcosine dimethylglycine methyltransferase                                                                                                                                                                                                           SCOP domains
               CATH domains 2o57D00 D:30-297 Vaccinia Virus protein VP39                                                                                                                                                                                                                              CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhh............hhhhhhhhhhhhhhhhhhhhhhhhh.......eeeee....hhhhhhhhhhhh.eeeeee.hhhhhhhhhhhhhhhh....eeeee............eeeeeee.hhhhh.hhhhhhhhhhhheeeeeeeeeeeeee....hhhhhhhhhhhh......hhhhhhhhhhhh.eeeeeeeehhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhh..eeeeeeeeee.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2o57 D  30 DDSDRFYFHVWGGEDIHVGLYKEPVDQDEIREASLRTDEWLASELAmTGVLQRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPCEDNSYDFIWSQDAFLHSPDKLKVFQECARVLKPRGVmAITDPmKEDGIDKSSIQPILDRIKLHDmGSLGLYRSLAKECGLVTLRTFSRPDSLVHHYSKVKAELIKRSSEFCSPEFQANmKRGLEHWIEGGRAGKLTWGGmLFRKSDKI 297
                                    39        49        59        69      | 79        89        99       109       119       129       139       149       159       169       179   |   189       199       209 |     219       229       239       249     ||262     | 272       282      |292     
                                                                         76-MSE                                                                                                    183-MSE |                   211-MSE                                     255|      268-MSE              289-MSE    
                                                                                                                                                                                         189-MSE                                                            259

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Alpha Beta (26913)

Architecture: 3-Layer(aba) Sandwich (12045)

Topology: Rossmann fold (7312)

Homologous Superfamily: Vaccinia Virus protein VP39 (378)

Galdieria sulphuraria. Organism_taxid: 130081. (1)

1a	2o57D00	D:30-297
1b	2o57C00	C:26-297
1c	2o57B00	B:25-297
1d	2o57A02	A:58-192,A:207-233,A:294-296

Class: Mainly Alpha (13335)

Architecture: Orthogonal Bundle (10391)

Topology: Helix Hairpins (718)

Homologous Superfamily: Mycolic acid cyclopropane synthase domain like (1)

Galdieria sulphuraria. Organism_taxid: 130081. (1)

2o57A01

A:17-57,A:196-206,A:234-286

(no "Pfam Domain" information available for 2O57)

Asymmetric Unit(hide GO term definitions)

(no "Gene Ontology" information available for 2O57)

Asymmetric Unit
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	Cis Peptide Bonds
		Glu A:52 - Pro A:53	[ RasMol ]
		Glu B:52 - Pro B:53	[ RasMol ]
		Glu C:52 - Pro C:53	[ RasMol ]
		Glu D:52 - Pro D:53	[ RasMol ]

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Description

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Ligands, Modified Residues, Ions (1, 24)

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Cis Peptide Bonds (4, 4)

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