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(-) Description

Title :  CRYSTAL STRUCTURE OF A DUF1048 PROTEIN WITH A LEFT-HANDED SUPERHELIX FOLD (BCE_3448) FROM BACILLUS CEREUS ATCC 10987 AT 2.05 A RESOLUTION
 
Authors :  Joint Center For Structural Genomics (Jcsg)
Date :  01 Dec 06  (Deposition) - 19 Dec 06  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.05
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi-2, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of Hypothetical Protein (Np_979748. 1) Fro Bacillus Cereus Atcc 10987 At 2. 05 A Resolution
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - HYPOTHETICAL PROTEIN
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: RESIDUES 14-97
    Gene: NP_979748.1
    Organism Scientific: BACILLUS CEREUS
    Organism Taxid: 222523
    Strain: ATCC 10987

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 16)

Asymmetric Unit (3, 16)
No.NameCountTypeFull Name
1GOL3Ligand/IonGLYCEROL
2MSE12Mod. Amino AcidSELENOMETHIONINE
3SO41Ligand/IonSULFATE ION
Biological Unit 1 (2, 7)
No.NameCountTypeFull Name
1GOL1Ligand/IonGLYCEROL
2MSE6Mod. Amino AcidSELENOMETHIONINE
3SO4-1Ligand/IonSULFATE ION
Biological Unit 2 (3, 9)
No.NameCountTypeFull Name
1GOL2Ligand/IonGLYCEROL
2MSE6Mod. Amino AcidSELENOMETHIONINE
3SO41Ligand/IonSULFATE ION

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREARG A:70 , ASP A:74 , ALA B:45 , ARG B:70 , GLN B:71 , ASP B:74BINDING SITE FOR RESIDUE SO4 B 1
2AC2SOFTWAREASP A:28 , TYR A:29 , ALA A:66 , ARG A:70 , GLN A:71 , HOH A:129BINDING SITE FOR RESIDUE GOL A 2
3AC3SOFTWAREGLU A:86 , ASN B:47 , ASP B:50 , HOH B:107 , HOH B:112 , HOH B:114BINDING SITE FOR RESIDUE GOL B 3
4AC4SOFTWAREGLU A:14 , MSE A:49 , GLU B:57 , LEU B:87 , ASN B:90 , ALA B:91 , TYR B:94BINDING SITE FOR RESIDUE GOL B 4

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2O3L)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2O3L)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2O3L)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2O3L)

(-) Exons   (0, 0)

(no "Exon" information available for 2O3L)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:83
 aligned with Q734F7_BACC1 | Q734F7 from UniProtKB/TrEMBL  Length:113

    Alignment length:86
                                    19        29        39        49        59        69        79        89      
          Q734F7_BACC1   10 GDKKEYKMMMARVAALPEDYQFVFKKIQNYMWNFSAGNGMDMLHIQYELIDLFEAGAAEGRQVLDITGEDVASFADELVANAKTYV 95
               SCOP domains ----d2o3la1 A:14-95 Hypothetical protein BCE3448                                       SCOP domains
               CATH domains 2   o3lA00 A:13-95 c-terminal domain of poly(a) binding protein                        CATH domains
               Pfam domains -------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author h---hhhhhhhhhhh.hhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhh.hhhhhhh.hhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------- Transcript
                  2o3l A 13 G---EYKmmmARVAALPEDYQFVFKKIQNYmWNFSAGNGmDmLHIQYELIDLFEAGAAEGRQVLDITGEDVASFADELVANAKTYV 95
                            |   |  |19        29        39|       49 |      59        69        79        89      
                            |  14  |||                   40-MSE   49-MSE                                          
                           13     17-MSE                            51-MSE                                        
                                   18-MSE                                                                         
                                    19-MSE                                                                        


Chain B from PDB  Type:PROTEIN  Length:81
 aligned with Q734F7_BACC1 | Q734F7 from UniProtKB/TrEMBL  Length:113

    Alignment length:81
                                    23        33        43        53        63        73        83        93 
          Q734F7_BACC1   14 EYKMMMARVAALPEDYQFVFKKIQNYMWNFSAGNGMDMLHIQYELIDLFEAGAAEGRQVLDITGEDVASFADELVANAKTY 94
               SCOP domains d2o3lb_ B: Hypothetical protein BCE3448                                           SCOP domains
               CATH domains 2o3lB00 B:14-94 c-terminal domain of poly(a) binding protein                      CATH domains
           Pfam domains (1) DUF1048-2o3lB01 B:14-94                                                           Pfam domains (1)
           Pfam domains (2) DUF1048-2o3lB02 B:14-94                                                           Pfam domains (2)
         Sec.struct. author ...hhhhhhhh.hhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhh..hhhhhhh.hhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------- Transcript
                  2o3l B 14 EYKmmmARVAALPEDYQFVFKKIQNYmWNFSAGNGmDmLHIQYELIDLFEAGAAEGRQVLDITGEDVASFADELVANAKTY 94
                               |||  23        33      | 43     | |53        63        73        83        93 
                              17-MSE                 40-MSE   49-MSE                                         
                               18-MSE                           51-MSE                                       
                                19-MSE
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric Unit
(-)
Class: All alpha proteins (14657)

(-) CATH Domains  (1, 2)

Asymmetric Unit
(-)
Class: Mainly Alpha (13335)

(-) Pfam Domains  (1, 2)

Asymmetric Unit
(-)
Clan: Yip1 (2)

(-) Gene Ontology  (1, 1)

Asymmetric Unit(hide GO term definitions)
Chain A,B   (Q734F7_BACC1 | Q734F7)
molecular function
    GO:0003723    RNA binding    Interacting selectively and non-covalently with an RNA molecule or a portion thereof.

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