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(-) Description

Title :  STRUCTURAL GENOMICS, THE CRYSTAL STRUCTURE OF A CONSERVED PUTATIVE DOMAIN FROM NEISSERIA MENINGITIDIS MC58
 
Authors :  K. Tan, L. Volkart, M. Gu, A. Joachimiak, Midwest Center For Structu Genomics (Mcsg)
Date :  01 Dec 06  (Deposition) - 02 Jan 07  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.55
Chains :  Asym./Biol. Unit :  A
Keywords :  Apc85631. 1, Conserved Putative Protein, Neisseria Meningitidis Mc58, Structural Genomics, Psi-2, Protein Structure Initiative, Midwest Center For Structural Genomics, Mcsg, Membrane Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  K. Tan, L. Volkart, M. Gu, A. Joachimiak
The Crystal Structure Of A Conserved Putative Domain From Neisseria Meningitidis Mc58
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - PUTATIVE PROTEIN
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21
    Expression System Plasmid: PMCSG19
    Expression System Strain: BL21
    Expression System Taxid: 511693
    Expression System Vector Type: PLASMID
    Fragment: RESIDUES 428-516
    Gene: NMB1485
    Organism Scientific: NEISSERIA MENINGITIDIS
    Organism Taxid: 122586
    Strain: MC58

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 4)

Asymmetric/Biological Unit (2, 4)
No.NameCountTypeFull Name
1EDO3Ligand/Ion1,2-ETHANEDIOL
2MSE1Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREPHE A:208 , HIS A:209 , THR A:210 , GLN A:244 , ARG A:245BINDING SITE FOR RESIDUE EDO A 101
2AC2SOFTWAREGLU A:218 , PHE A:231 , HIS A:232BINDING SITE FOR RESIDUE EDO A 102
3AC3SOFTWAREARG A:235 , LEU A:254BINDING SITE FOR RESIDUE EDO A 103

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2O3G)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2O3G)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2O3G)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2O3G)

(-) Exons   (0, 0)

(no "Exon" information available for 2O3G)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:76
 aligned with Q9JYP7_NEIMB | Q9JYP7 from UniProtKB/TrEMBL  Length:518

    Alignment length:76
                                   450       460       470       480       490       500       510      
         Q9JYP7_NEIMB   441 ESLTVEGALEYVELAPQLNLPQQEEDADFHTVAGLIMEELQTIPDVGDFADFHGWRFEVVEKEGQRIERVKITKLP 516
               SCOP domains d2o3ga1 A:180-255 Putative protein NMB1485                                   SCOP domains
               CATH domains 2o3gA00 A:180-255  [code=3.30.465.10, no name defined]                       CATH domains
               Pfam domains CorC_HlyC-2o3gA01 A:180-255                                                  Pfam domains
         Sec.struct. author ...eee...hhhhhh...............hhhhhhhhhhh.......eeee..eeeeeeeee..eeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------- Transcript
                 2o3g A 180 ESLTVEGALEYVELAPQLNLPQQEEDADFHTVAGLImEELQTIPDVGDFADFHGWRFEVVEKEGQRIERVKITKLP 255
                                   189       199       209      |219       229       239       249      
                                                              216-MSE
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Clan: no clan defined [family: CorC_HlyC] (12)

(-) Gene Ontology  (6, 6)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (Q9JYP7_NEIMB | Q9JYP7)
molecular function
    GO:0003824    catalytic activity    Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
    GO:0050660    flavin adenine dinucleotide binding    Interacting selectively and non-covalently with FAD, flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes, in either the oxidized form, FAD, or the reduced form, FADH2.
    GO:0016614    oxidoreductase activity, acting on CH-OH group of donors    Catalysis of an oxidation-reduction (redox) reaction in which a CH-OH group act as a hydrogen or electron donor and reduces a hydrogen or electron acceptor.
biological process
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
cellular component
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.

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