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(-) Description

Title :  CRYSTAL STRUCTURE OF A PROTEIN AF_0751 FROM ARCHAEOGLOBUS FULGIDUS
 
Authors :  J. B. Bonanno, M. Dickey, K. T. Bain, B. Wu, A. Slocombe, V. Sridhar, J. M. S. K. Burley, S. C. Almo, New York Sgx Research Center For Struct Genomics (Nysgxrc)
Date :  01 Dec 06  (Deposition) - 26 Dec 06  (Release) - 24 Oct 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.20
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Structural Genomics, Unknown Function, Psi-2, Protein Structure Initiative, New York Sgx Research Center For Structural Genomics, Nysgxrc (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. B. Bonanno, M. Dickey, K. T. Bain, B. Wu, A. Slocombe, V. Sridhar, J. M. Sauder, S. K. Burley, S. C. Almo
Crystal Structure Of A Protein Af_0751 From Archaeoglobus Fulgidus
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - UPF0106 PROTEIN AF_0751
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: MODIFIED PET26
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PET
    Gene: AF_0751
    Organism Scientific: ARCHAEOGLOBUS FULGIDUS
    Organism Taxid: 2234

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 2O3A)

(-) Sites  (0, 0)

(no "Site" information available for 2O3A)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2O3A)

(-) Cis Peptide Bonds  (3, 3)

Asymmetric/Biological Unit
No.Residues
1Glu A:39 -Asp A:40
2Phe A:72 -Asp A:73
3Glu B:39 -Asp B:40

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2O3A)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2O3A)

(-) Exons   (0, 0)

(no "Exon" information available for 2O3A)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:161
 aligned with TRM56_ARCFU | O29507 from UniProtKB/Swiss-Prot  Length:168

    Alignment length:167
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       
          TRM56_ARCFU     1 MEVYVLRLGHRPERDKRISTHVALTARAFGAKGIYFDTEDKSVFESVRDVVERWGGDFFIKAVSWKKLLREFDGLKVHLTMYGIPLPQKLEEIKRADKVLVVVGAEKVPPEVYELCDLNISIGTQPHSEVAALAVFLDRVLGKVFDISFDDAKIKVIPSERGKRVVS 167
               SCOP domains d2o3aa1 A:1-  167 Uncharacterized protein AF0751                                                                                                                        SCOP domains
               CATH domains 2o3aA00 A:1-  167  [code=3.40.1280.10, no name defined]                                                                                                                 CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee.....--hhhhhhhhhhhhhhh...eeee...hhhhhhhhhhhhhhhh...eeee.hhhhhhhhh..eeeee....eehhhhhhhhhh..eeeeee.----..hhhhhh.eeee......hhhhhhhhhhhhhh.............eee......eee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2o3a A   1 LEVYVLRLGHRP--DKRISTHVALTARAFGAKGIYFDTEDKSVFESVRDVVERWGGDFFIKAVSWKKLLREFDGLKVHLTMYGIPLPQKLEEIKRADKVLVVVG----PPEVYELCDLNISIGTQPHSEVAALAVFLDRVLGKVFDISFDDAKIKVIPSERGKRVVS 167
                                    10 |  |   20        30        40        50        60        70        80        90       100   |   110       120       130       140       150       160       
                                      12 15                                                                                      104  109                                                          


Chain B from PDB  Type:PROTEIN  Length:163
 aligned with TRM56_ARCFU | O29507 from UniProtKB/Swiss-Prot  Length:168

    Alignment length:167
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       
          TRM56_ARCFU     1 MEVYVLRLGHRPERDKRISTHVALTARAFGAKGIYFDTEDKSVFESVRDVVERWGGDFFIKAVSWKKLLREFDGLKVHLTMYGIPLPQKLEEIKRADKVLVVVGAEKVPPEVYELCDLNISIGTQPHSEVAALAVFLDRVLGKVFDISFDDAKIKVIPSERGKRVVS 167
               SCOP domains d2o3ab_ B: Uncharacterized protein AF0751                                                                                                                               SCOP domains
               CATH domains 2o3aB00 B:1-167  [code=3.40.1280.10, no name defined]                                                                                                                   CATH domains
           Pfam domains (1) -----------------------------------------------------Trm56-2o3aB01 B:54-167                                                                                             Pfam domains (1)
           Pfam domains (2) -----------------------------------------------------Trm56-2o3aB02 B:54-167                                                                                             Pfam domains (2)
         Sec.struct. author .eeeeee.......hhhhhhhhhhhhhhh...eeee...hhhhhhhhhhhhhhhh...eeee.hhhhhhhh...eeeee....eehhhhhhhhhhh.eeeeee.----.hhhhhhh.eeee......hhhhhhhhhhhhhhh............eee......eee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2o3a B   1 LEVYVLRLGHRPERDKRISTHVALTARAFGAKGIYFDTEDKSVFESVRDVVERWGGDFFIKAVSWKKLLREFDGLKVHLTMYGIPLPQKLEEIKRADKVLVVVG----PPEVYELCDLNISIGTQPHSEVAALAVFLDRVLGKVFDISFDDAKIKVIPSERGKRVVS 167
                                    10        20        30        40        50        60        70        80        90       100   |   110       120       130       140       150       160       
                                                                                                                                 104  109
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Clan: SPOUT (28)

(-) Gene Ontology  (7, 7)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B   (TRM56_ARCFU | O29507)
molecular function
    GO:0008168    methyltransferase activity    Catalysis of the transfer of a methyl group to an acceptor molecule.
    GO:0008175    tRNA methyltransferase activity    Catalysis of the transfer of a methyl group from a donor to a nucleoside residue in a tRNA molecule.
    GO:0016740    transferase activity    Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
biological process
    GO:0032259    methylation    The process in which a methyl group is covalently attached to a molecule.
    GO:0002128    tRNA nucleoside ribose methylation    The process that results in the modification of the sugar of a nucleoside in tRNA at the 2'O position.
    GO:0008033    tRNA processing    The process in which a pre-tRNA molecule is converted to a mature tRNA, ready for addition of an aminoacyl group.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

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    Glu A:39 - Asp A:40   [ RasMol ]  
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