2O2D - JenaLib

Asymmetric Unit (Jmol Viewer)

Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Title :   CRYSTAL STRUCTURE OF PHOSPHOGLUCOSE ISOMERASE FROM TRYPANOSOMA BRUCEI COMPLEXED WITH CITRATE

Authors :   D. Arsenieva, G. H. Mazock, B. L. Appavu, C. J. Jeffery

Date :   29 Nov 06 (Deposition) - 13 Nov 07 (Release) - 13 Jul 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.90

Chains :   Asym. Unit : A,B,C
Biol. Unit 1: A  (2x)
Biol. Unit 2: B,C  (1x)

Keywords :   Dimer, Isomerase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   D. Arsenieva, B. L. Appavu, G. H. Mazock, C. J. Jeffery
Crystal Structure Of Phosphoglucose Isomerase From Trypanosoma Brucei Complexed With Glucose-6-Phosphate At 1. A Resolution
Proteins V. 74 72 2008
PubMed-ID: 18561188 | Reference-DOI: 10.1002/PROT.22133

Molecule 1 - GLUCOSE-6-PHOSPHATE ISOMERASE, GLYCOSOMAL
	Chains	:	A, B, C
	EC Number	:	5.3.1.9
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PGEMEX-1
	Expression System Strain	:	BL21(DE3)PLYSS
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Gene	:	PGI
	Organism Scientific	:	TRYPANOSOMA BRUCEI BRUCEI
	Organism Taxid	:	5702
	Other Details	:	GENE PLACED DIRECTLY UNDER T7 PROMOTER
	Strain	:	927/4 GUTAT10.1
	Synonym	:	GPI; PHOSPHOGLUCOSE ISOMERASE; PGI; PHOSPHOHEXOSE ISOMERASE

		1	2	3
Asymmetric Unit	:	A	B	C
Biological Unit 1 (2x)	:	A
Biological Unit 2 (1x)	:		B	C

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (2, 6)

No.	Name	Count	Type	Full Name
1	CIT	3	Ligand/Ion	CITRIC ACID
2	GOL	3	Ligand/Ion	GLYCEROL

Biological Unit 1 (2, 4)

No.	Name	Count	Type	Full Name
1	CIT	2	Ligand/Ion	CITRIC ACID
2	GOL	2	Ligand/Ion	GLYCEROL

Biological Unit 2 (2, 4)

No.	Name	Count	Type	Full Name
1	CIT	2	Ligand/Ion	CITRIC ACID
2	GOL	2	Ligand/Ion	GLYCEROL

Asymmetric Unit (6, 6)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	ILE A:205 , GLY A:206 , GLY A:207 , SER A:208 , SER A:258 , LYS A:259 , THR A:260 , THR A:263 , GLN A:407 , HIS A:442 , HOH A:7059 , HOH A:7234	BINDING SITE FOR RESIDUE CIT A 5001
2	AC2	SOFTWARE	ILE B:205 , GLY B:207 , SER B:208 , SER B:258 , LYS B:259 , THR B:260 , THR B:263 , GLN B:407 , HOH B:7009 , HOH B:7237 , HOH B:7258 , HOH B:7277 , HOH B:7361 , HOH B:7400 , HIS C:442	BINDING SITE FOR RESIDUE CIT B 5002
3	AC3	SOFTWARE	HIS B:442 , ILE C:205 , GLY C:207 , SER C:208 , SER C:258 , LYS C:259 , THR C:260 , THR C:263 , GLN C:407 , HOH C:7046 , HOH C:7140 , HOH C:7315	BINDING SITE FOR RESIDUE CIT C 5003
4	AC4	SOFTWARE	THR A:77 , ASP A:78 , ARG A:81 , TYR A:85 , ASP A:110 , HOH A:7123 , HOH A:7339	BINDING SITE FOR RESIDUE GOL A 7001
5	AC5	SOFTWARE	HIS B:74 , ASP B:78 , ARG B:81 , TYR B:85 , ASP B:110	BINDING SITE FOR RESIDUE GOL B 7002
6	AC6	SOFTWARE	THR C:77 , ASP C:78 , ARG C:81 , TYR C:85 , ASP C:110 , HOH C:7215	BINDING SITE FOR RESIDUE GOL C 7003

(no "SS Bond" information available for 2O2D)

Asymmetric Unit

No.	Residues
1	Gly A:437	-	Thr A:438
2	Gly B:437	-	Thr B:438
3	Gly C:437	-	Thr C:438

(no "SAP(SNP)/Variant" information available for 2O2D)

Asymmetric Unit (3, 9)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	P_GLUCOSE_ISOMERASE_3	PS51463	Glucose-6-phosphate isomerase family profile.	G6PI_TRYBB	53-604	3	A:53-604 B:53-604 C:53-604
2	P_GLUCOSE_ISOMERASE_1	PS00765	Phosphoglucose isomerase signature 1.	G6PI_TRYBB	321-334	3	A:321-334 B:321-334 C:321-334
3	P_GLUCOSE_ISOMERASE_2	PS00174	Phosphoglucose isomerase signature 2.	G6PI_TRYBB	554-571	3	A:554-571 B:554-571 C:554-571

Biological Unit 1 (3, 6)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	P_GLUCOSE_ISOMERASE_3	PS51463	Glucose-6-phosphate isomerase family profile.	G6PI_TRYBB	53-604	2	A:53-604 - -
2	P_GLUCOSE_ISOMERASE_1	PS00765	Phosphoglucose isomerase signature 1.	G6PI_TRYBB	321-334	2	A:321-334 - -
3	P_GLUCOSE_ISOMERASE_2	PS00174	Phosphoglucose isomerase signature 2.	G6PI_TRYBB	554-571	2	A:554-571 - -

Biological Unit 2 (3, 6)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	P_GLUCOSE_ISOMERASE_3	PS51463	Glucose-6-phosphate isomerase family profile.	G6PI_TRYBB	53-604	2	- B:53-604 C:53-604
2	P_GLUCOSE_ISOMERASE_1	PS00765	Phosphoglucose isomerase signature 1.	G6PI_TRYBB	321-334	2	- B:321-334 C:321-334
3	P_GLUCOSE_ISOMERASE_2	PS00174	Phosphoglucose isomerase signature 2.	G6PI_TRYBB	554-571	2	- B:554-571 C:554-571

(no "Exon" information available for 2O2D)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:568
 aligned with G6PI_TRYBB | P13377 from UniProtKB/Swiss-Prot  Length:607

    Alignment length:568
                                    48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438       448       458       468       478       488       498       508       518       528       538       548       558       568       578       588       598        
           G6PI_TRYBB    39 LKGVGADADTTLTSCASWTQLQKLYEQYGDEPIKKHFEADSERGQRYSVKVSLGSKDENFLFLDYSKSHINDEIKCALLRLAEERGIRQFVQSVFRGERVNTTENRPVLHIALRNRSNRPIYVDGKDVMPAVNKVLDQMRSFSEKVRTGEWKGHTGKAIRHVVNIGIGGSDLGPVMATEALKPFSQRDLSLHFVSNVDGTHIAEVLKSIDIEATLFIVASKTFTTQETITNALSARRALLDYLRSRGIDEKGSVAKHFVALSTNNQKVKEFGIDEENMFQFWDWVGGRYSMWSAIGLPIMISIGYENFVELLTGAHVIDEHFANAPPEQNVPLLLALVGVWYINFFGAVTHAILPYDQYLWRLPAYLQQLDMESNGKYVTRSGKTVSTLTGPIIFGEAGTNGQHAFYQLIHQGTNLIPCDFIGAIQSQNKIGDHHKIFMSNFFAQTEALMIGKSPSEVRRELEAAGERSAEKINALLPHKTFIGGRPSNTLLIKSLTPRALGAIIAMYEHKVLVQGAIWGIDSYDQWGVELGKVLAKSILPQLRPGMRVNNHDSSTNGLINMFNELSH 606
               SCOP domains d2o2da_ A: Phosphoglucose isomerase, PGI                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 SCOP domains
               CATH domains 2o2dA01 A:39-186,A:321-558 Glucose-6-phosphate isomerase like protein; domain 1                                                                     2o2dA02 A:187-320 Glucose-6-phosphate isomerase like protein; domain 1                                                                2o2dA01 A:39-186,A:321-558 Glucose-6-phosphate isomerase like protein; domain 1                                                                                                                                                               2o2dA03 A:559-606                                CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..............hhhhhhhhhhhhhhh..hhhhhhhhh.hhhhhheeeee.......eeeee......hhhhhhhhhhhhhhhhhhhhhhhhhh............hhhhhh.......ee..eehhhhhhhhhhhhhhhhhhhhh............eeeee.hhhhhhhhhhhhhhhhhhh....eeeee...hhhhhhhhhhhhhhh.eeeeee.....hhhhhhhhhhhhhhhhhhhhhh......hhhhheeeee..hhhhhhhh.hhh.eee.....hhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....eeeeeeehhhhhhhhhhhhhhhhhhhh................eee....hhhhhhhhhhhhhh.....eeeeeeee......hhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhh...hhhhhhhhhhhhh......eeeeeeee.hhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) --------------P_GLUCOSE_ISOMERASE_3  PDB: A:53-604 UniProt: 53-604                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    -- PROSITE (1)
                PROSITE (2) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------P_GLUCOSE_ISOM---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------P_GLUCOSE_ISOMERAS----------------------------------- PROSITE (2)
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2o2d A  39 LKGVGADADTTLTSCASWTQLQKLYEQYGDEPIKKHFETDSERGQRYSVKVSLGSKDENFLFLDYSKSHINDEIKCALLRLAEERGIRQFVQSVFRGERVNTTENRPVLHIALRNRSNRPIYVDGKDVMPAVNKVLDQMRSFSEKVRTGEWKGHTGKAIRHVVNIGIGGSDLGPVMATEALKPFSQRDLSLHFVSNVDGTHIAEVLKSIDIEATLFIVASKTFTTQETITNALSARRALLDYLRSRGIDEKGSVAKHFVALSTNNQKVKEFGIDEENMFQFWDWVGGRYSMWSAIGLPIMISIGYENFVELLTGAHVIDEHFANAPPEQNVPLLLALVGVWYINFFGAVTHAILPYDQYLWRLPAYLQQLDMESNGKYVTRSGKTVSTLTGPIIFGEAGTNGQHAFYQLIHQGTNLIPCDFIGAIQSQNKIGDHHKIFMSNFFAQTEALMIGKSPSEVRRELEAAGERSAEKINALLPHKTFIGGRPSNTLLIKSLTPRALGAIIAMYEHKVLVQGAIWGIDSYDQWGVELGKVLAKSILPQLRPGMRVNNHDSSTNGLINMFNELSH 606
                                    48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438       448       458       468       478       488       498       508       518       528       538       548       558       568       578       588       598

Chain B from PDB  Type:PROTEIN  Length:569
 aligned with G6PI_TRYBB | P13377 from UniProtKB/Swiss-Prot  Length:607

    Alignment length:569
                                    47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417       427       437       447       457       467       477       487       497       507       517       527       537       547       557       567       577       587       597         
           G6PI_TRYBB    38 RLKGVGADADTTLTSCASWTQLQKLYEQYGDEPIKKHFEADSERGQRYSVKVSLGSKDENFLFLDYSKSHINDEIKCALLRLAEERGIRQFVQSVFRGERVNTTENRPVLHIALRNRSNRPIYVDGKDVMPAVNKVLDQMRSFSEKVRTGEWKGHTGKAIRHVVNIGIGGSDLGPVMATEALKPFSQRDLSLHFVSNVDGTHIAEVLKSIDIEATLFIVASKTFTTQETITNALSARRALLDYLRSRGIDEKGSVAKHFVALSTNNQKVKEFGIDEENMFQFWDWVGGRYSMWSAIGLPIMISIGYENFVELLTGAHVIDEHFANAPPEQNVPLLLALVGVWYINFFGAVTHAILPYDQYLWRLPAYLQQLDMESNGKYVTRSGKTVSTLTGPIIFGEAGTNGQHAFYQLIHQGTNLIPCDFIGAIQSQNKIGDHHKIFMSNFFAQTEALMIGKSPSEVRRELEAAGERSAEKINALLPHKTFIGGRPSNTLLIKSLTPRALGAIIAMYEHKVLVQGAIWGIDSYDQWGVELGKVLAKSILPQLRPGMRVNNHDSSTNGLINMFNELSH 606
               SCOP domains d2o2db_ B: Phosphoglucose isomerase, PGI                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  SCOP domains
               CATH domains 2o2dB01 B:38-186,B:321-558 Glucose-6-phosphate isomerase like protein; domain 1                                                                      2o2dB02 B:187-320 Glucose-6-phosphate isomerase like protein; domain 1                                                                2o2dB01 B:38-186,B:321-558 Glucose-6-phosphate isomerase like protein; domain 1                                                                                                                                                               2o2dB03 B:559-606                                CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...............hhhhhhhhhhhhhhh..hhhhhhhhh.hhhhhheeeee.......eeeeeeee...hhhhhhhhhhhhhhhhhhhhhhhhhh............hhhhhh.......ee..eehhhhhhhhhhhhhhhhhhhhh............eeeee.hhhhhhhhhhhhhhhhhhh....eeeee...hhhhhhhhhhhhhhh.eeeeee.....hhhhhhhhhhhhhhhhhhhhhh......hhhhheeeee.hhhhhhhhh.hhh.eee.....hhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....eeeeeeehhhhhhhhhhhhhhhhhhhh................eee....hhhhh.hhhhhhhh.....eeeeeeee......hhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhh....hhhhhhhhhhhhh......eeeeeeee.hhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) ---------------P_GLUCOSE_ISOMERASE_3  PDB: B:53-604 UniProt: 53-604                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    -- PROSITE (1)
                PROSITE (2) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------P_GLUCOSE_ISOM---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------P_GLUCOSE_ISOMERAS----------------------------------- PROSITE (2)
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2o2d B  38 RLKGVGADADTTLTSCASWTQLQKLYEQYGDEPIKKHFETDSERGQRYSVKVSLGSKDENFLFLDYSKSHINDEIKCALLRLAEERGIRQFVQSVFRGERVNTTENRPVLHIALRNRSNRPIYVDGKDVMPAVNKVLDQMRSFSEKVRTGEWKGHTGKAIRHVVNIGIGGSDLGPVMATEALKPFSQRDLSLHFVSNVDGTHIAEVLKSIDIEATLFIVASKTFTTQETITNALSARRALLDYLRSRGIDEKGSVAKHFVALSTNNQKVKEFGIDEENMFQFWDWVGGRYSMWSAIGLPIMISIGYENFVELLTGAHVIDEHFANAPPEQNVPLLLALVGVWYINFFGAVTHAILPYDQYLWRLPAYLQQLDMESNGKYVTRSGKTVSTLTGPIIFGEAGTNGQHAFYQLIHQGTNLIPCDFIGAIQSQNKIGDHHKIFMSNFFAQTEALMIGKSPSEVRRELEAAGERSAEKINALLPHKTFIGGRPSNTLLIKSLTPRALGAIIAMYEHKVLVQGAIWGIDSYDQWGVELGKVLAKSILPQLRPGMRVNNHDSSTNGLINMFNELSH 606
                                    47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417       427       437       447       457       467       477       487       497       507       517       527       537       547       557       567       577       587       597

Chain C from PDB  Type:PROTEIN  Length:561
 aligned with G6PI_TRYBB | P13377 from UniProtKB/Swiss-Prot  Length:607

    Alignment length:561
                                    55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395       405       415       425       435       445       455       465       475       485       495       505       515       525       535       545       555       565       575       585       595       605 
           G6PI_TRYBB    46 ADTTLTSCASWTQLQKLYEQYGDEPIKKHFEADSERGQRYSVKVSLGSKDENFLFLDYSKSHINDEIKCALLRLAEERGIRQFVQSVFRGERVNTTENRPVLHIALRNRSNRPIYVDGKDVMPAVNKVLDQMRSFSEKVRTGEWKGHTGKAIRHVVNIGIGGSDLGPVMATEALKPFSQRDLSLHFVSNVDGTHIAEVLKSIDIEATLFIVASKTFTTQETITNALSARRALLDYLRSRGIDEKGSVAKHFVALSTNNQKVKEFGIDEENMFQFWDWVGGRYSMWSAIGLPIMISIGYENFVELLTGAHVIDEHFANAPPEQNVPLLLALVGVWYINFFGAVTHAILPYDQYLWRLPAYLQQLDMESNGKYVTRSGKTVSTLTGPIIFGEAGTNGQHAFYQLIHQGTNLIPCDFIGAIQSQNKIGDHHKIFMSNFFAQTEALMIGKSPSEVRRELEAAGERSAEKINALLPHKTFIGGRPSNTLLIKSLTPRALGAIIAMYEHKVLVQGAIWGIDSYDQWGVELGKVLAKSILPQLRPGMRVNNHDSSTNGLINMFNELSH 606
               SCOP domains d2o2dc_ C: Phosphoglucose isomerase, PGI                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          SCOP domains
               CATH domains 2o2dC01 C:46-186,C:321-558 Glucose-6-phosphate isomerase like protein; domain 1                                                              2o2dC02 C:187-320 Glucose-6-phosphate isomerase like protein; domain 1                                                                2o2dC01 C:46-186,C:321-558 Glucose-6-phosphate isomerase like protein; domain 1                                                                                                                                                               2o2dC03 C:559-606                                CATH domains
           Pfam domains (1) --------------------------------------------------------PGI-2o2dC01 C:102-598                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            -------- Pfam domains (1)
           Pfam domains (2) --------------------------------------------------------PGI-2o2dC02 C:102-598                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            -------- Pfam domains (2)
           Pfam domains (3) --------------------------------------------------------PGI-2o2dC03 C:102-598                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            -------- Pfam domains (3)
         Sec.struct. author .......hhhhhhhhhhhhhhh..hhhhhhhhh.hhhhhheeeee.......eeeeeeee...hhhhhhhhhhhhhhhhhhhhhhhhhhh...........hhhhhh.......ee..eehhhhhhhhhhhhhhhhhhhhh............eeeee.hhhhhhhhhhhhhhhhhhh....eeeee...hhhhhhhhhhhhhhh.eeeeee.....hhhhhhhhhhhhhhhhhhhhhh......hhhhheeeee.hhhhhhhhh.hhh.eee.....hhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....eeeeeeehhhhhhhhhhhhhhhhhhhh................eee....hhhhh.hhhhhhhh.....eeeeeeee......hhhhhhhhhhhhhhhhhhhh.hhhhhhhhhh.......hhhhhhhhhhh......eeeeeeee.hhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) -------P_GLUCOSE_ISOMERASE_3  PDB: C:53-604 UniProt: 53-604                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    -- PROSITE (1)
                PROSITE (2) -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------P_GLUCOSE_ISOM---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------P_GLUCOSE_ISOMERAS----------------------------------- PROSITE (2)
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2o2d C  46 ADTTLTSCASWTQLQKLYEQYGDEPIKKHFETDSERGQRYSVKVSLGSKDENFLFLDYSKSHINDEIKCALLRLAEERGIRQFVQSVFRGERVNTTENRPVLHIALRNRSNRPIYVDGKDVMPAVNKVLDQMRSFSEKVRTGEWKGHTGKAIRHVVNIGIGGSDLGPVMATEALKPFSQRDLSLHFVSNVDGTHIAEVLKSIDIEATLFIVASKTFTTQETITNALSARRALLDYLRSRGIDEKGSVAKHFVALSTNNQKVKEFGIDEENMFQFWDWVGGRYSMWSAIGLPIMISIGYENFVELLTGAHVIDEHFANAPPEQNVPLLLALVGVWYINFFGAVTHAILPYDQYLWRLPAYLQQLDMESNGKYVTRSGKTVSTLTGPIIFGEAGTNGQHAFYQLIHQGTNLIPCDFIGAIQSQNKIGDHHKIFMSNFFAQTEALMIGKSPSEVRRELEAAGERSAEKINALLPHKTFIGGRPSNTLLIKSLTPRALGAIIAMYEHKVLVQGAIWGIDSYDQWGVELGKVLAKSILPQLRPGMRVNNHDSSTNGLINMFNELSH 606
                                    55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395       405       415       425       435       445       455       465       475       485       495       505       515       525       535       545       555       565       575       585       595       605

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Alpha and beta proteins (a/b) (23833)

Fold: SIS domain (85)

Superfamily: SIS domain (85)

Family: Phosphoglucose isomerase, PGI (37)

Protein domain: Phosphoglucose isomerase, PGI (24)

Trypanosoma brucei [TaxId: 5702] (2)

1a	d2o2da_	A:
1b	d2o2db_	B:
1c	d2o2dc_	C:

Asymmetric Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Alpha Beta (26913)

Architecture: 3-Layer(aba) Sandwich (12045)

Topology: Rossmann fold (7312)

Homologous Superfamily: Glucose-6-phosphate isomerase like protein; domain 1 (105)

Trypanosoma brucei brucei. Organism_taxid: 5702. Strain: 927/4 gutat10.1. (2)

1a	2o2dA02	A:187-320
1b	2o2dA01	A:39-186,A:321-558
1c	2o2dB01	B:38-186,B:321-558
1d	2o2dB02	B:187-320
1e	2o2dC02	C:187-320
1f	2o2dC01	C:46-186,C:321-558

Class: Mainly Alpha (13335)

Architecture: Orthogonal Bundle (10391)

Topology: Phosphoglucose isomerase, C-terminal domain (32)

Homologous Superfamily: [code=1.10.1390.10, no name defined] (32)

Trypanosoma brucei brucei. Organism_taxid: 5702. Strain: 927/4 gutat10.1. (2)

2a	2o2dA03	A:559-606
2b	2o2dB03	B:559-606
2c	2o2dC03	C:559-606

Asymmetric Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: SIS (53)

Family: PGI (23)

Trypanosoma brucei brucei (2)

1a	PGI-2o2dC01	C:102-598
1b	PGI-2o2dC02	C:102-598
1c	PGI-2o2dC03	C:102-598

Asymmetric Unit(hide GO term definitions)

Chain A,B,C (G6PI_TRYBB | P13377)

molecular function
	GO:0004347	glucose-6-phosphate isomerase activity	Catalysis of the reaction: D-glucose 6-phosphate = D-fructose 6-phosphate.
	GO:0016853	isomerase activity	Catalysis of the geometric or structural changes within one molecule. Isomerase is the systematic name for any enzyme of EC class 5.
biological process
	GO:0006094	gluconeogenesis	The formation of glucose from noncarbohydrate precursors, such as pyruvate, amino acids and glycerol.
	GO:0006096	glycolytic process	The chemical reactions and pathways resulting in the breakdown of a carbohydrate into pyruvate, with the concomitant production of a small amount of ATP and the reduction of NAD(P) to NAD(P)H. Glycolysis begins with the metabolism of a carbohydrate to generate products that can enter the pathway and ends with the production of pyruvate. Pyruvate may be converted to acetyl-coenzyme A, ethanol, lactate, or other small molecules.
cellular component
	GO:0020015	glycosome	A membrane-bounded organelle found in organisms from the order Kinetoplastida that houses the enzymes of glycolysis.
	GO:0005777	peroxisome	A small organelle enclosed by a single membrane, and found in most eukaryotic cells. Contains peroxidases and other enzymes involved in a variety of metabolic processes including free radical detoxification, lipid catabolism and biosynthesis, and hydrogen peroxide metabolism.

Asymmetric Unit
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		AC2	[ RasMol ]	+environment [ RasMol ]
		AC3	[ RasMol ]	+environment [ RasMol ]
		AC4	[ RasMol ]	+environment [ RasMol ]
		AC5	[ RasMol ]	+environment [ RasMol ]
		AC6	[ RasMol ]	+environment [ RasMol ]

	Cis Peptide Bonds
		Gly A:437 - Thr A:438	[ RasMol ]
		Gly B:437 - Thr B:438	[ RasMol ]
		Gly C:437 - Thr C:438	[ RasMol ]

Biological Units
	Complete Structure
		Biological Unit 1	[ Jena3D ]
		Biological Unit 2	[ Jena3D ]

Jmol
	protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick [ Asym. Unit PNG format \| Asym. Unit - sites PNG format \| Biol. Unit 1 PNG format \| Biol. Unit 1 - sites PNG format \| Biol. Unit 2 PNG format ](automatic orientation, automatically generated)
Molscript
	protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick [ mono PDF format \| stereo PDF format ](default orientation, automatically generated)

Access by PDB/NDB ID
	2o2d
		Family and Domain Information	:	ProDom \| SYSTERS
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		Orientation in Membranes	:	OPM
		Protein Surface	:	SURFACE
		Secondary Structure	:	DSSP (structure derived) \| HSSP (homology derived)
		Structural Genomics	:	GeneCensus
		Structural Neighbours	:	CE \| VAST
		Structure Classification	:	CATH \| Dali \| SCOP
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	G6PI_TRYBB \| P13377
		Comparative Protein Structure Models	:	ModBase
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		Protein-protein Interaction	:	DIP
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	5.3.1.9
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		Domain Information	:	XDom
		Interatomic Contacts of Structural Units	:	CSU
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	G6PI_TRYBB \| P13377
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UniProtKB/Swiss-Prot
	G6PI_TRYBB \| P13377	:	2aol 2o2c 3cv0

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (2, 6)

Sites (6, 6)

SS Bonds (0, 0)

Cis Peptide Bonds (3, 3)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (3, 9)

Exons (0, 0)

Sequences/Alignments

Classification and Annotation

SCOP Domains (1, 3)

CATH Domains (2, 9)

Pfam Domains (1, 3)

Gene Ontology (6, 6)

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Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File