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(-) Description

Title :  CRYSTAL STRUCTURE OF A PUTATIVE HD SUPERFAMILY HYDROLASE (BH1327) FROM BACILLUS HALODURANS AT 1.90 A RESOLUTION
 
Authors :  Joint Center For Structural Genomics (Jcsg)
Date :  27 Nov 06  (Deposition) - 19 Dec 06  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.90
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Putative Hd Superfamily Hydrolase, Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi-2, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of Hypothetical Protein (Np_242193. 1) Fro Bacillus Halodurans At 1. 90 A Resolution
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - BH1327 PROTEIN
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: NP_242193.1
    Organism Scientific: BACILLUS HALODURANS
    Organism Taxid: 86665

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (7, 23)

Asymmetric/Biological Unit (7, 23)
No.NameCountTypeFull Name
1DGI1Ligand/Ion2'-DEOXYGUANOSINE-5'-DIPHOSPHATE
2FE4Ligand/IonFE (III) ION
3MSE8Mod. Amino AcidSELENOMETHIONINE
4NO31Ligand/IonNITRATE ION
5PG47Ligand/IonTETRAETHYLENE GLYCOL
6PO41Ligand/IonPHOSPHATE ION
7UNL1Ligand/IonUNKNOWN LIGAND

(-) Sites  (15, 15)

Asymmetric Unit (15, 15)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREHIS A:21 , HIS A:50 , ASP A:51 , ASP A:127 , FE A:401 , PO4 A:500 , HOH A:622BINDING SITE FOR RESIDUE FE A 400
02AC2SOFTWAREASP A:51 , HIS A:83 , HIS A:109 , FE A:400 , PO4 A:500 , HOH A:507 , HOH A:622BINDING SITE FOR RESIDUE FE A 401
03AC3SOFTWAREARG A:18 , HIS A:21 , ASP A:51 , LYS A:54 , HIS A:83 , ASP A:127 , ARG A:133 , FE A:400 , FE A:401 , UNL A:501 , HOH A:622 , HOH A:661BINDING SITE FOR RESIDUE PO4 A 500
04AC4SOFTWAREASP B:51 , HIS B:83 , HIS B:109 , FE B:401 , DGI B:500 , HOH B:625BINDING SITE FOR RESIDUE FE B 400
05AC5SOFTWAREHIS B:21 , HIS B:50 , ASP B:51 , ASP B:127 , FE B:400 , DGI B:500 , HOH B:625BINDING SITE FOR RESIDUE FE B 401
06AC6SOFTWARETHR A:15 , GLU A:16 , HIS A:17 , GLY B:0 , GLY B:96 , ILE B:97 , GLU B:98 , ASP B:99BINDING SITE FOR RESIDUE NO3 B 402
07AC7SOFTWARETYR A:77 , THR A:110 , LEU A:164 , PRO A:170 , ILE A:171 , TYR A:172 , THR A:175 , PO4 A:500 , HOH A:661BINDING SITE FOR RESIDUE UNL A 501
08AC8SOFTWAREPRO A:12 , HIS A:13 , LEU A:14 , THR A:15 , PG4 A:506 , MSE B:1 , LYS B:5 , VAL B:95BINDING SITE FOR RESIDUE PG4 A 502
09AC9SOFTWAREASP A:31 , LEU A:32 , LEU A:35 , ILE A:129 , LYS A:146 , HOH A:669 , LEU B:35BINDING SITE FOR RESIDUE PG4 A 503
10BC1SOFTWARELYS A:166 , LYS A:167 , ASN A:168 , GLN A:169 , PG4 A:505 , HOH A:673 , GLU B:67BINDING SITE FOR RESIDUE PG4 A 504
11BC2SOFTWARELYS A:166 , LYS A:167 , PG4 A:504 , HOH A:671 , LYS B:68BINDING SITE FOR RESIDUE PG4 A 505
12BC3SOFTWARELYS A:11 , LEU A:14 , GLU A:16 , PG4 A:502BINDING SITE FOR RESIDUE PG4 A 506
13BC4SOFTWAREARG B:18 , HIS B:21 , ASP B:51 , LYS B:54 , TYR B:77 , GLU B:80 , HIS B:83 , HIS B:109 , THR B:110 , ASP B:127 , ARG B:133 , LEU B:164 , PRO B:170 , TYR B:172 , THR B:175 , FE B:400 , FE B:401 , HOH B:556 , HOH B:609 , HOH B:625 , HOH B:628 , HOH B:654BINDING SITE FOR RESIDUE DGI B 500
14BC5SOFTWAREHIS B:13 , TYR B:52 , GLU B:94BINDING SITE FOR RESIDUE PG4 B 501
15BC6SOFTWARELEU B:35 , ARG B:142 , LYS B:146 , HOH B:622BINDING SITE FOR RESIDUE PG4 B 502

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2O08)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2O08)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2O08)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2O08)

(-) Exons   (0, 0)

(no "Exon" information available for 2O08)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:187
 aligned with Q9KD90_BACHD | Q9KD90 from UniProtKB/TrEMBL  Length:187

    Alignment length:187
                             1                                                                                                                                                                                         
                             |       9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       
         Q9KD90_BACHD     - -MNRGKALQLVKPHLTEHRYQHTIGVMETAIDLAKLYGADQQKAELAAIFHDYAKFRDKNEMRTLIREKLSQQDILFYGDELLHAPCGAYYVREEVGIEDEDVLQAIRFHTTGRPNMSLLEKIIFLADYIEPNRQFPGVEKVRTQAKTDLNGAIISSLVNTITFLLKKNQPIYPDTLATYNQLLLEQ 186
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 2o08A00 A:0-186 Hypothetical protein af1432                                                                                                                                                 CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhh......hhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhh........hhhhhhhhhhhhhh......hhhhhhhhhh.hhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2o08 A   0 GmNRGKALQLVKPHLTEHRYQHTIGVmETAIDLAKLYGADQQKAELAAIFHDYAKFRDKNEmRTLIREKLSQQDILFYGDELLHAPCGAYYVREEVGIEDEDVLQAIRFHTTGRPNmSLLEKIIFLADYIEPNRQFPGVEKVRTQAKTDLNGAIISSLVNTITFLLKKNQPIYPDTLATYNQLLLEQ 186
                             |       9        19      | 29        39        49        59 |      69        79        89        99       109      |119       129       139       149       159       169       179       
                             |                       26-MSE                             61-MSE                                                116-MSE                                                                  
                             1-MSE                                                                                                                                                                                     


Chain B from PDB  Type:PROTEIN  Length:187
 aligned with Q9KD90_BACHD | Q9KD90 from UniProtKB/TrEMBL  Length:187

    Alignment length:187
                             1                                                                                                                                                                                         
                             |       9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       
         Q9KD90_BACHD     - -MNRGKALQLVKPHLTEHRYQHTIGVMETAIDLAKLYGADQQKAELAAIFHDYAKFRDKNEMRTLIREKLSQQDILFYGDELLHAPCGAYYVREEVGIEDEDVLQAIRFHTTGRPNMSLLEKIIFLADYIEPNRQFPGVEKVRTQAKTDLNGAIISSLVNTITFLLKKNQPIYPDTLATYNQLLLEQ 186
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 2o08B00 B:0-186 Hypothetical protein af1432                                                                                                                                                 CATH domains
           Pfam domains (1) ------------------HD-2o08B01 B:18-132                                                                                                ------------------------------------------------------ Pfam domains (1)
           Pfam domains (2) ------------------HD-2o08B02 B:18-132                                                                                                ------------------------------------------------------ Pfam domains (2)
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhh......hhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhh........hhhhhhhhhhhhhh......hhhhhhhhhh.hhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2o08 B   0 GmNRGKALQLVKPHLTEHRYQHTIGVmETAIDLAKLYGADQQKAELAAIFHDYAKFRDKNEmRTLIREKLSQQDILFYGDELLHAPCGAYYVREEVGIEDEDVLQAIRFHTTGRPNmSLLEKIIFLADYIEPNRQFPGVEKVRTQAKTDLNGAIISSLVNTITFLLKKNQPIYPDTLATYNQLLLEQ 186
                             |       9        19      | 29        39        49        59 |      69        79        89        99       109      |119       129       139       149       159       169       179       
                             1-MSE                   26-MSE                             61-MSE                                                116-MSE
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2O08)

(-) CATH Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Class: Mainly Alpha (13335)

(-) Pfam Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Clan: HD_PDEase (93)
(-)
Family: HD (9)
(-)
Bacillus halodurans (1)
1aHD-2o08B01B:18-132
1bHD-2o08B02B:18-132

(-) Gene Ontology  (1, 1)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B   (Q9KD90_BACHD | Q9KD90)
molecular function
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.

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