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Title :   THE STRUCTURE OF UNCHARACTERIZED PROTEIN TM1266 FROM THERMOTOGA MARITIMA.

Authors :   M. E. Cuff, E. Evdokimova, M. Kudritska, A. Edwards, A. Joachimiak, A. S Midwest Center For Structural Genomics (Mcsg)

Date :   22 Nov 06 (Deposition) - 19 Dec 06 (Release) - 13 Jul 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.95

Chains :   Asym./Biol. Unit : A,B,C,D

Keywords :   Thermotoga Maritima, Sturctural Genomics, Tm1266, Structural Genomics, Psi-2, Protein Structure Initiative, Midwest Center For Structural Genomics, Mcsg, Structural Genomics-Unknown Function Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   M. E. Cuff, E. Evdokimova, M. Kudritska, A. Edwards, A. Joachimiak, A. Savchenko
The Structure Of Uncharacterized Protein Tm1266 From Thermotoga Maritima.
To Be Published
PubMed: search

Molecule 1 - HYPOTHETICAL PROTEIN
	Chains	:	A, B, C, D
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI BL21(DE3)
	Expression System Plasmid	:	P11
	Expression System Strain	:	BL21 (DE3)
	Expression System Taxid	:	469008
	Expression System Vector Type	:	PLASMID
	Organism Scientific	:	THERMOTOGA MARITIMA
	Organism Taxid	:	243274
	Strain	:	MSB8

		1	2	3	4
Asymmetric/Biological Unit	:	A	B	C	D

Summary Information (see also Sequences/Alignments below)

Asymmetric/Biological Unit (4, 11)

No.	Name	Count	Type	Full Name
1	ACY	4	Ligand/Ion	ACETIC ACID
2	GOL	1	Ligand/Ion	GLYCEROL
3	MSE	5	Mod. Amino Acid	SELENOMETHIONINE
4	PO4	1	Ligand/Ion	PHOSPHATE ION

Asymmetric Unit (6, 6)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	TYR A:19 , ASN A:23 , ARG A:36	BINDING SITE FOR RESIDUE PO4 A 302
2	AC2	SOFTWARE	ARG B:36 , ACY B:403 , HOH B:475 , ARG D:36	BINDING SITE FOR RESIDUE ACY B 401
3	AC3	SOFTWARE	HIS A:27 , SER A:30 , HOH A:524 , ACY C:404	BINDING SITE FOR RESIDUE ACY A 402
4	AC4	SOFTWARE	ARG B:36 , GLY B:38 , ACY B:401 , HOH B:432 , ARG D:36	BINDING SITE FOR RESIDUE ACY B 403
5	AC5	SOFTWARE	ACY A:402 , TYR C:19 , ASN C:23	BINDING SITE FOR RESIDUE ACY C 404
6	AC6	SOFTWARE	ASN A:23 , ARG A:36 , ASN C:23 , ARG C:36	BINDING SITE FOR RESIDUE GOL A 501

(no "SS Bond" information available for 2NZC)

(no "Cis Peptide Bond" information available for 2NZC)

(no "SAP(SNP)/Variant" information available for 2NZC)

(no "PROSITE Motif" information available for 2NZC)

(no "Exon" information available for 2NZC)

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:80
 aligned with Q9X0Z3_THEMA | Q9X0Z3 from UniProtKB/TrEMBL  Length:82

    Alignment length:80
                                    11        21        31        41        51        61        71        81
          Q9X0Z3_THEMA    2 EKRFYILTIVVEDREKAYRQVNELLHNFSEDILLRVGYPVREENMAIIFLVLKTDNDTIGALSGKLGQISGVRVKTVPLK 81
               SCOP domains d2nzca1 A:2-81 Hypothetical protein TM1266                                       SCOP domains
               CATH domains 2nzcA00 A:2-81 ACT-like. Chain A, domain 2                                       CATH domains
               Pfam domains -------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeeeee.hhhhhhhhhhhhhhh...eeeeeeeeehhh.eeeeeeeeeehhhhhhhhhhhhhh...eeeeeee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------- Transcript
                  2nzc A  2 EKRFYILTIVVEDREKAYRQVNELLHNFSEDILLRVGYPVREENmAIIFLVLKTDNDTIGALSGKLGQISGVRVKTVPLK 81
                                    11        21        31        41    |   51        61        71        81
                                                                       46-MSE

Chain B from PDB  Type:PROTEIN  Length:81
 aligned with Q9X0Z3_THEMA | Q9X0Z3 from UniProtKB/TrEMBL  Length:82

    Alignment length:81
                                    11        21        31        41        51        61        71        81 
          Q9X0Z3_THEMA    2 EKRFYILTIVVEDREKAYRQVNELLHNFSEDILLRVGYPVREENMAIIFLVLKTDNDTIGALSGKLGQISGVRVKTVPLKR 82
               SCOP domains d2nzcb_ B: automated matches                                                      SCOP domains
               CATH domains 2nzcB00 B:2-82 ACT-like. Chain A, domain 2                                        CATH domains
               Pfam domains --------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeeeee.hhhhhhhhhhhhhhh...eeeeeeeeehhh.eeeeeeeeeehhhhhhhhhhhhh....eeeeeee... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------- Transcript
                  2nzc B  2 EKRFYILTIVVEDREKAYRQVNELLHNFSEDILLRVGYPVREENmAIIFLVLKTDNDTIGALSGKLGQISGVRVKTVPLKR 82
                                    11        21        31        41    |   51        61        71        81 
                                                                       46-MSE

Chain C from PDB  Type:PROTEIN  Length:80
 aligned with Q9X0Z3_THEMA | Q9X0Z3 from UniProtKB/TrEMBL  Length:82

    Alignment length:80
                                    11        21        31        41        51        61        71        81
          Q9X0Z3_THEMA    2 EKRFYILTIVVEDREKAYRQVNELLHNFSEDILLRVGYPVREENMAIIFLVLKTDNDTIGALSGKLGQISGVRVKTVPLK 81
               SCOP domains d2nzcc_ C: automated matches                                                     SCOP domains
               CATH domains 2nzcC00 C:2-81 ACT-like. Chain A, domain 2                                       CATH domains
               Pfam domains -------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeeeee.hhhhhhhhhhhhhhh...eeeeeeeeehhh.eeeeeeeeeehhhhhhhhhhhhhh...eeeeeee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------- Transcript
                  2nzc C  2 EKRFYILTIVVEDREKAYRQVNELLHNFSEDILLRVGYPVREENmAIIFLVLKTDNDTIGALSGKLGQISGVRVKTVPLK 81
                                    11        21        31        41    |   51        61        71        81
                                                                       46-MSE

Chain D from PDB  Type:PROTEIN  Length:82
 aligned with Q9X0Z3_THEMA | Q9X0Z3 from UniProtKB/TrEMBL  Length:82

    Alignment length:82
                             1                                                                                
                             |       9        19        29        39        49        59        69        79  
          Q9X0Z3_THEMA    - -MEKRFYILTIVVEDREKAYRQVNELLHNFSEDILLRVGYPVREENMAIIFLVLKTDNDTIGALSGKLGQISGVRVKTVPLK 81
               SCOP domains d2nzcd_ D: automated matches                                                       SCOP domains
               CATH domains 2nzcD00 D:0-81 ACT-like. Chain A, domain 2                                         CATH domains
               Pfam domains ---------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeeeeeee.hhhhhhhhhhhhhhh...eeeeeeeeehhh.eeeeeeeeeehhhhhhhhhhhhh....eeeeeee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------- Transcript
                  2nzc D  0 HmEKRFYILTIVVEDREKAYRQVNELLHNFSEDILLRVGYPVREENmAIIFLVLKTDNDTIGALSGKLGQISGVRVKTVPLK 81
                             |       9        19        29        39      | 49        59        69        79  
                             1-MSE                                       46-MSE

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric/Biological Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Alpha and beta proteins (a+b) (23004)

Fold: Ferredoxin-like (1795)

Superfamily: ACT-like (63)

Family: TM1266-like (2)

Protein domain: automated matches (1)

Thermotoga maritima [TaxId: 243274] (1)

1a	d2nzcb_	B:
1b	d2nzcc_	C:
1c	d2nzcd_	D:

Protein domain: Hypothetical protein TM1266 (1)

Thermotoga maritima [TaxId: 2336] (1)

d2nzca1

A:2-81

Asymmetric/Biological Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Alpha Beta (26913)

Architecture: 2-Layer Sandwich (8480)

Topology: Alpha-Beta Plaits (1688)

Homologous Superfamily: ACT-like. Chain A, domain 2 (9)

Thermotoga maritima msb8. Organism_taxid: 243274. Strain: msb8. (2)

1a	2nzcA00	A:2-81
1b	2nzcC00	C:2-81
1c	2nzcB00	B:2-82
1d	2nzcD00	D:0-81

(no "Pfam Domain" information available for 2NZC)

Asymmetric/Biological Unit(hide GO term definitions)

(no "Gene Ontology" information available for 2NZC)

Asymmetric/Biological Unit
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Ligands, Modified Residues, Ions (4, 11)

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