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(-) Description

Title :  CRYSTAL STRUCTURE OF AN UNKNOWN PROTEIN FROM GALDIERIA SULPHURARIA
 
Authors :  E. Bitto, G. E. Wesenberg, G. N. Phillips Jr. , J. G. Mccoy, C. A. Bingman For Eukaryotic Structural Genomics (Cesg)
Date :  20 Nov 06  (Deposition) - 12 Dec 06  (Release) - 25 Jul 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.80
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Protein Structure Initiative, Psi, Center For Eukaryotic Structural Genomics, Cesg, Structural Genomics, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  E. Bitto, D. J. Kim, C. A. Bingman, H. J. Kim, B. W. Han, G. N. Phillips
Crystal Structure Of Tandem Act Domain-Containing Protein Actp From Galdieria Sulphuraria.
Proteins V. 80 2105 2012
PubMed-ID: 22528523  |  Reference-DOI: 10.1002/PROT.24101

(-) Compounds

Molecule 1 - UNKNOWN PROTEIN
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PVP16
    Expression System Strain: B834P(RARE2)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: C855_101305G34.T1(MSU_GALDI)
    Organism Scientific: GALDIERIA SULPHURARIA
    Organism Taxid: 130081

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 6)

Asymmetric/Biological Unit (1, 6)
No.NameCountTypeFull Name
1MSE6Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (0, 0)

(no "Site" information available for 2NYI)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2NYI)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2NYI)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2NYI)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2NYI)

(-) Exons   (0, 0)

(no "Exon" information available for 2NYI)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:171
 aligned with J3QW32_GALSU | J3QW32 from UniProtKB/TrEMBL  Length:195

    Alignment length:175
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171     
         J3QW32_GALSU     2 ETQSFVVSVAGSDRVGIVHDFSWALKNISANVESSRMACLGGDFAMIVLVSLNAKDGKLIQSALESALPGFQISTRRASSVAERHVSPDTREYELYVEGPDSEGIVEAVTAVLAKKGANIVELETETLPAPFAGFTLFRMGSRVAFPFPLYQEVVTALSRVEEEFGVDIDLEEVV 176
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 2nyiA01 A:2-82  [code=3.30.70.260, no name defined]                              ----2nyiA02 A:87-176  [code=3.30.70.260, no name defined]                                      CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeeeee...hhhhhhhhhhhhh..eeeeeeeeee..eeeeeeeeee....hhhhhhhhhhhh...eeeeee....----....eeeeeeeeeee...hhhhhhhhhhhhh..eeeeeeeeeee......eeeeeeeeeeee..hhhhhhhhhhhhhhhhh.eeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2nyi A   2 ETQSFVVSVAGSDRVGIVHDFSWALKNISANVESSRmACLGGDFAmIVLVSLNAKDGKLIQSALESALPGFQISTRRASSV----VSPDTREYELYVEGPDSEGIVEAVTAVLAKKGANIVELETETLPAPFAGFTLFRmGSRVAFPFPLYQEVVTALSRVEEEFGVDIDLEEVV 176
                                    11        21        31      | 41     |  51        61        71        81|    |  91       101       111       121       131       141       151       161       171     
                                                               38-MSE   47-MSE                             82   87                                                   141-MSE                               


Chain B from PDB  Type:PROTEIN  Length:170
 aligned with J3QW32_GALSU | J3QW32 from UniProtKB/TrEMBL  Length:195

    Alignment length:175
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171     
         J3QW32_GALSU     2 ETQSFVVSVAGSDRVGIVHDFSWALKNISANVESSRMACLGGDFAMIVLVSLNAKDGKLIQSALESALPGFQISTRRASSVAERHVSPDTREYELYVEGPDSEGIVEAVTAVLAKKGANIVELETETLPAPFAGFTLFRMGSRVAFPFPLYQEVVTALSRVEEEFGVDIDLEEVV 176
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 2nyiB01 B:2-86  [code=3.30.70.260, no name defined]                                  2nyiB02 B:87-176  [code=3.30.70.260, no name defined]                                      CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeeeee...hhhhhhhhhhhhh..eeeeeeeeee..eeeeeeeeee....hhhhhhhhhhhh...eeeeee..-----.....eeeeeeeeeee...hhhhhhhhhhhhh..eeeeeeeeeee......eeeeeeeeeeee..hhhhhhhhhhhhhhhhh.eeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2nyi B   2 ETQSFVVSVAGSDRVGIVHDFSWALKNISANVESSRmACLGGDFAmIVLVSLNAKDGKLIQSALESALPGFQISTRRAS-----HVSPDTREYELYVEGPDSEGIVEAVTAVLAKKGANIVELETETLPAPFAGFTLFRmGSRVAFPFPLYQEVVTALSRVEEEFGVDIDLEEVV 176
                                    11        21        31      | 41     |  51        61        71        |-    |   91       101       111       121       131       141       151       161       171     
                                                               38-MSE   47-MSE                           80    86                                                    141-MSE
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2NYI)

(-) CATH Domains  (1, 4)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2NYI)

(-) Gene Ontology  (2, 2)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B   (J3QW32_GALSU | J3QW32)
molecular function
    GO:0016597    amino acid binding    Interacting selectively and non-covalently with an amino acid, organic acids containing one or more amino substituents.
biological process
    GO:0008152    metabolic process    The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.

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