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(-) Description

Title :  NMR STRUCTURE OF ANTIBACTERIAL DEFENSIN DEF-AAA FROM THE INSECT ANOPHELES GAMBIAE
 
Authors :  C. Landon, F. Barbault, F. Vovelle
Date :  20 Nov 06  (Deposition) - 13 Nov 07  (Release) - 24 Feb 09  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  X  (10x)
Keywords :  Insect Defensin; Csab Motif; Antibacterial, Antimicrobial Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  C. Landon, F. Barbault, M. Legrain, M. Guenneugues, F. Vovelle
Rational Design Of Peptides Active Against The Gram Positive Bacteria Staphylococcus Aureus
Proteins V. 72 229 2008
PubMed-ID: 18214975  |  Reference-DOI: 10.1002/PROT.21912
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - DEFENSIN
    Chains: X
    Engineered: YES
    Expression System: SACCHAROMYCES CEREVISIAE
    Expression System Common: BAKER'S YEAST
    Expression System Taxid: 4932
    Expression System Vector Type: PLASMID
    Fragment: RESIDUES 63-102
    Gene: DEF1
    Organism Common: AFRICAN MALARIA MOSQUITO
    Organism Scientific: ANOPHELES GAMBIAE
    Organism Taxid: 7165
    Synonym: DEF-AAA

 Structural Features

(-) Chains, Units

  
NMR Structure (10x): 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 2NY8)

(-) Sites  (0, 0)

(no "Site" information available for 2NY8)

(-) SS Bonds  (3, 3)

NMR Structure
No.Residues
1X:3 -X:30
2X:16 -X:36
3X:20 -X:38

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2NY8)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (2, 2)

NMR Structure (2, 2)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_DEFI_ANOGA_008 *S69RDEFI_ANOGA  ---  ---XS7R
2UniProtVAR_DEFI_ANOGA_009 *K95RDEFI_ANOGA  ---  ---XK33R
   * ID not provided by source
  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2NY8)

(-) Exons   (0, 0)

(no "Exon" information available for 2NY8)

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain X from PDB  Type:PROTEIN  Length:40
 aligned with DEFI_ANOGA | Q17027 from UniProtKB/Swiss-Prot  Length:102

    Alignment length:40
                                    72        82        92       102
           DEFI_ANOGA    63 ATCDLASGFGVGSSLCAAHCIARRYRGGYCNSKAVCVCRN 102
               SCOP domains d2ny8x_ X: automated matches             SCOP domains
               CATH domains 2ny8X00 X:1-40                           CATH domains
               Pfam domains -----Defensin_2-2ny8X01 X:6-39         - Pfam domains
         Sec.struct. author .............hhhhhhhhh....ee.........ee. Sec.struct. author
                 SAPs(SNPs) ------R-------------------------R------- SAPs(SNPs)
                    PROSITE ---------------------------------------- PROSITE
                 Transcript ---------------------------------------- Transcript
                 2ny8 X   1 ATCDLASGFGVGSSLCAAHCIARRYRGGYCNSKAVCVCRN  40
                                    10        20        30        40
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

NMR Structure
(-)
Class: Small proteins (3458)

(-) CATH Domains  (1, 1)

NMR Structure
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (1, 1)

NMR Structure
(-)
Clan: Knottin_1 (78)

(-) Gene Ontology  (7, 7)

NMR Structure(hide GO term definitions)
Chain X   (DEFI_ANOGA | Q17027)
biological process
    GO:0006952    defense response    Reactions, triggered in response to the presence of a foreign body or the occurrence of an injury, which result in restriction of damage to the organism attacked or prevention/recovery from the infection caused by the attack.
    GO:0042742    defense response to bacterium    Reactions triggered in response to the presence of a bacterium that act to protect the cell or organism.
    GO:0006959    humoral immune response    An immune response mediated through a body fluid.
    GO:0002376    immune system process    Any process involved in the development or functioning of the immune system, an organismal system for calibrated responses to potential internal or invasive threats.
    GO:0045087    innate immune response    Innate immune responses are defense responses mediated by germline encoded components that directly recognize components of potential pathogens.
cellular component
    GO:0005576    extracellular region    The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.
    GO:0005615    extracellular space    That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid.

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  2ny8
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  DEFI_ANOGA | Q17027
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        DEFI_ANOGA | Q17027: 2e3e 2e3f 2e3g 2ny9 2nz3

(-) Related Entries Specified in the PDB File

2e3e 2e3f 2e3g 2ny9 2nz3