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(-) Description

Title :  SHORT CHAIN DEHYDROGENASE FROM PSEUDOMONAS AERUGINOSA
 
Authors :  T. E. Mcgrath, M. S. Kimber, B. Beattie, D. Thambipillai, A. Dharamsi, C K. Nethery-Brokx, A. M. Edwards, E. F. Pai, N. Y. Chirgadze
Date :  16 Nov 06  (Deposition) - 28 Nov 06  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.30
Chains :  Asym./Biol. Unit :  A,B,C,D
Keywords :  Short-Chain Dehydrogenase, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  T. E. Mcgrath, N. Y. Chirgadze
Short Chain Dehydrogenase From Pseudomonas Aeruginosa
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - PROBABLE SHORT-CHAIN DEHYDROGENASE
    Chains: A, B, C, D
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PET15B
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Organism Scientific: PSEUDOMONAS AERUGINOSA
    Organism Taxid: 287

 Structural Features

(-) Chains, Units

  1234
Asymmetric/Biological Unit : ABCD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 20)

Asymmetric/Biological Unit (2, 20)
No.NameCountTypeFull Name
1MSE16Mod. Amino AcidSELENOMETHIONINE
2SO44Ligand/IonSULFATE ION

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLY A:9 , ALA A:10 , THR A:11 , SER A:12 , GLY A:33 , ARG A:34 , ARG A:35 , HOH A:255BINDING SITE FOR RESIDUE SO4 A 254
2AC2SOFTWARETHR B:11 , SER B:12 , GLY B:33 , ARG B:34 , ARG B:35 , HOH B:306BINDING SITE FOR RESIDUE SO4 B 254
3AC3SOFTWAREGLY C:9 , ALA C:10 , THR C:11 , SER C:12 , ARG C:34 , ARG C:35 , HOH C:311BINDING SITE FOR RESIDUE SO4 C 254
4AC4SOFTWAREGLY D:9 , ALA D:10 , THR D:11 , GLY D:33 , ARG D:34 , ARG D:35 , HOH D:340 , HOH D:351BINDING SITE FOR RESIDUE SO4 D 254

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2NWQ)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2NWQ)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2NWQ)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2NWQ)

(-) Exons   (0, 0)

(no "Exon" information available for 2NWQ)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:229
 aligned with Q9HUQ6_PSEAE | Q9HUQ6 from UniProtKB/TrEMBL  Length:253

    Alignment length:249
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241         
         Q9HUQ6_PSEAE     2 SSTLFITGATSGFGEACARRFAEAGWSLVLTGRREERLQALAGELSAKTRVLPLTLDVRDRAAMSAAVDNLPEEFATLRGLINNAGLALGTDPAQSCDLDDWDTMVDTNIKGLLYSTRLLLPRLIAHGAGASIVNLGSVAGKWPYPGSHVYGGTKAFVEQFSLNLRCDLQGTGVRVTNLEPGLCESEFSLVRFGGDQARYDKTYAGAHPIQPEDIAETIFWIMNQPAHLNINSLEIMPVSQSWAGFAIH 250
               SCOP domains d2nwqa_ A: automated matches                                                                                                                                                                                                                              SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeee......hhhhhhhhhhhh..eeeeee.hhhhhhhhhhhhh....eeeee....hhhhhhhhhhh.hhhhh...eeee.........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...eeeee.hhhhh.....hhhhhhhhhhhhhhhhhhhh.......eeeeeee....--------------------.....hhhhhhhhhhhhhh....eeeeeeeeee..eeeeeeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2nwq A   2 SSTLFITGATSGFGEACARRFAEAGWSLVLTGRREERLQALAGELSAKTRVLPLTLDVRDRAAmSAAVDNLPEEFATLRGLINNAGLALGTDPAQSCDLDDWDTmVDTNIKGLLYSTRLLLPRLIAHGAGASIVNLGSVAGKWPYPGSHVYGGTKAFVEQFSLNLRCDLQGTGVRVTNLEPGLCE--------------------GAHPIQPEDIAETIFWImNQPAHLNINSLEImPVSQSWAGFAIH 250
                                    11        21        31        41        51        61   |    71        81        91       101    |  111       121       131       141       151       161       171       181    |    -         -     | 211       221  |    231      |241         
                                                                                          65-MSE                                  106-MSE                                                                         186                  207              224-MSE       238-MSE        


Chain B from PDB  Type:PROTEIN  Length:230
 aligned with Q9HUQ6_PSEAE | Q9HUQ6 from UniProtKB/TrEMBL  Length:253

    Alignment length:250
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251
         Q9HUQ6_PSEAE     2 SSTLFITGATSGFGEACARRFAEAGWSLVLTGRREERLQALAGELSAKTRVLPLTLDVRDRAAMSAAVDNLPEEFATLRGLINNAGLALGTDPAQSCDLDDWDTMVDTNIKGLLYSTRLLLPRLIAHGAGASIVNLGSVAGKWPYPGSHVYGGTKAFVEQFSLNLRCDLQGTGVRVTNLEPGLCESEFSLVRFGGDQARYDKTYAGAHPIQPEDIAETIFWIMNQPAHLNINSLEIMPVSQSWAGFAIHR 251
               SCOP domains d2nwqb_ B: automated matches                                                                                                                                                                                                                               SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeee......hhhhhhhhhhhh..eeeeee.hhhhhhhhhhhhh....eeeee....hhhhhhhhhhh.hhhhh...eeee.........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...eeeee.hhhhh.....hhhhhhhhhhhhhhhhhhhh.......eeeeeee....--------------------.....hhhhhhhhhhhhhh....eeeeeeeeee..eeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2nwq B   2 SSTLFITGATSGFGEACARRFAEAGWSLVLTGRREERLQALAGELSAKTRVLPLTLDVRDRAAmSAAVDNLPEEFATLRGLINNAGLALGTDPAQSCDLDDWDTmVDTNIKGLLYSTRLLLPRLIAHGAGASIVNLGSVAGKWPYPGSHVYGGTKAFVEQFSLNLRCDLQGTGVRVTNLEPGLCE--------------------GAHPIQPEDIAETIFWImNQPAHLNINSLEImPVSQSWAGFAIHR 251
                                    11        21        31        41        51        61   |    71        81        91       101    |  111       121       131       141       151       161       171       181    |    -         -     | 211       221  |    231      |241       251
                                                                                          65-MSE                                  106-MSE                                                                         186                  207              224-MSE       238-MSE         


Chain C from PDB  Type:PROTEIN  Length:230
 aligned with Q9HUQ6_PSEAE | Q9HUQ6 from UniProtKB/TrEMBL  Length:253

    Alignment length:249
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241         
         Q9HUQ6_PSEAE     2 SSTLFITGATSGFGEACARRFAEAGWSLVLTGRREERLQALAGELSAKTRVLPLTLDVRDRAAMSAAVDNLPEEFATLRGLINNAGLALGTDPAQSCDLDDWDTMVDTNIKGLLYSTRLLLPRLIAHGAGASIVNLGSVAGKWPYPGSHVYGGTKAFVEQFSLNLRCDLQGTGVRVTNLEPGLCESEFSLVRFGGDQARYDKTYAGAHPIQPEDIAETIFWIMNQPAHLNINSLEIMPVSQSWAGFAIH 250
               SCOP domains d2nwqc_ C: automated matches                                                                                                                                                                                                                              SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeee......hhhhhhhhhhhh..eeeeee.hhhhhhhhhhhhh....eeeee....hhhhhhhhhhh.hhhhh...eeee.........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...eeeee.hhhhh.....hhhhhhhhhhhhhhhhhhhh.......eeeeeee.....-------------------.....hhhhhhhhhhhhhh....eeeeeeeeee..eeeeeeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2nwq C   2 SSTLFITGATSGFGEACARRFAEAGWSLVLTGRREERLQALAGELSAKTRVLPLTLDVRDRAAmSAAVDNLPEEFATLRGLINNAGLALGTDPAQSCDLDDWDTmVDTNIKGLLYSTRLLLPRLIAHGAGASIVNLGSVAGKWPYPGSHVYGGTKAFVEQFSLNLRCDLQGTGVRVTNLEPGLCES-------------------GAHPIQPEDIAETIFWImNQPAHLNINSLEImPVSQSWAGFAIH 250
                                    11        21        31        41        51        61   |    71        81        91       101    |  111       121       131       141       151       161       171       181     |   -         -     | 211       221  |    231      |241         
                                                                                          65-MSE                                  106-MSE                                                                          187                 207              224-MSE       238-MSE        


Chain D from PDB  Type:PROTEIN  Length:230
 aligned with Q9HUQ6_PSEAE | Q9HUQ6 from UniProtKB/TrEMBL  Length:253

    Alignment length:249
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241         
         Q9HUQ6_PSEAE     2 SSTLFITGATSGFGEACARRFAEAGWSLVLTGRREERLQALAGELSAKTRVLPLTLDVRDRAAMSAAVDNLPEEFATLRGLINNAGLALGTDPAQSCDLDDWDTMVDTNIKGLLYSTRLLLPRLIAHGAGASIVNLGSVAGKWPYPGSHVYGGTKAFVEQFSLNLRCDLQGTGVRVTNLEPGLCESEFSLVRFGGDQARYDKTYAGAHPIQPEDIAETIFWIMNQPAHLNINSLEIMPVSQSWAGFAIH 250
               SCOP domains d2nwqd_ D: automated matches                                                                                                                                                                                                                              SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeee.....hhhhhhhhhhhhh..eeeeee.hhhhhhhhhhhhh....eeeee....hhhhhhhhhhh.hhhhh...eeee.........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...eeeee.hhhhh.....hhhhhhhhhhhhhhhhhhhhhh.....eeeeeee.....-------------------.....hhhhhhhhhhhhhh....eeeeeeeeee..eeeeeeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2nwq D   2 SSTLFITGATSGFGEACARRFAEAGWSLVLTGRREERLQALAGELSAKTRVLPLTLDVRDRAAmSAAVDNLPEEFATLRGLINNAGLALGTDPAQSCDLDDWDTmVDTNIKGLLYSTRLLLPRLIAHGAGASIVNLGSVAGKWPYPGSHVYGGTKAFVEQFSLNLRCDLQGTGVRVTNLEPGLCES-------------------GAHPIQPEDIAETIFWImNQPAHLNINSLEImPVSQSWAGFAIH 250
                                    11        21        31        41        51        61   |    71        81        91       101    |  111       121       131       141       151       161       171       181     |   -         -     | 211       221  |    231      |241         
                                                                                          65-MSE                                  106-MSE                                                                          187                 207              224-MSE       238-MSE
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 4)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2NWQ)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2NWQ)

(-) Gene Ontology  (2, 2)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B,C,D   (Q9HUQ6_PSEAE | Q9HUQ6)
molecular function
    GO:0016491    oxidoreductase activity    Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
biological process
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.

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